MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Ralstonia solanacearum GMI1000 plasmid pGMI1000MP

Total Repeats: 115

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_003296	TGCGAA	2	12	14	25	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
2	NC_003296	TTCATG	2	12	26348	26359	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
3	NC_003296	ATTCGA	2	12	28781	28792	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_003296	ATGCCG	2	12	48886	48897	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
5	NC_003296	GGAAAA	2	12	61848	61859	66.67 %	0 %	33.33 %	0 %	Non-Coding
6	NC_003296	GCGGTC	2	12	89462	89473	0 %	16.67 %	50 %	33.33 %	Non-Coding
7	NC_003296	GCGCTT	2	12	92369	92380	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
8	NC_003296	GTCGCG	2	12	120930	120941	0 %	16.67 %	50 %	33.33 %	Non-Coding
9	NC_003296	GCACCG	2	12	128547	128558	16.67 %	0 %	33.33 %	50 %	Non-Coding
10	NC_003296	GGCGCC	2	12	193496	193507	0 %	0 %	50 %	50 %	Non-Coding
11	NC_003296	CACCGG	2	12	193997	194008	16.67 %	0 %	33.33 %	50 %	Non-Coding
12	NC_003296	CACCGG	2	12	197198	197209	16.67 %	0 %	33.33 %	50 %	Non-Coding
13	NC_003296	CGAACG	2	12	197638	197649	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
14	NC_003296	CAGCGC	2	12	198533	198544	16.67 %	0 %	33.33 %	50 %	Non-Coding
15	NC_003296	CCGGCT	2	12	200050	200061	0 %	16.67 %	33.33 %	50 %	Non-Coding
16	NC_003296	GCGACG	2	12	201216	201227	16.67 %	0 %	50 %	33.33 %	Non-Coding
17	NC_003296	CGGCGC	2	12	201976	201987	0 %	0 %	50 %	50 %	Non-Coding
18	NC_003296	TCGGGC	2	12	202520	202531	0 %	16.67 %	50 %	33.33 %	Non-Coding
19	NC_003296	CGATGG	2	12	204516	204527	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
20	NC_003296	CGGCGC	2	12	205176	205187	0 %	0 %	50 %	50 %	Non-Coding
21	NC_003296	CTCGGG	2	12	205717	205728	0 %	16.67 %	50 %	33.33 %	Non-Coding
22	NC_003296	GCGACG	2	12	207587	207598	16.67 %	0 %	50 %	33.33 %	Non-Coding
23	NC_003296	TTGAAA	2	12	212302	212313	50 %	33.33 %	16.67 %	0 %	Non-Coding
24	NC_003296	ATGACG	2	12	219859	219870	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
25	NC_003296	CCAGCA	2	12	229927	229938	33.33 %	0 %	16.67 %	50 %	Non-Coding
26	NC_003296	GCGCCC	2	12	242087	242098	0 %	0 %	33.33 %	66.67 %	Non-Coding
27	NC_003296	TTCACA	2	12	262978	262989	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
28	NC_003296	CGGCGC	2	12	334569	334580	0 %	0 %	50 %	50 %	Non-Coding
29	NC_003296	GCTGTC	2	12	336593	336604	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
30	NC_003296	GGCGCG	2	12	337501	337512	0 %	0 %	66.67 %	33.33 %	Non-Coding
31	NC_003296	ATAACG	2	12	424688	424699	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
32	NC_003296	TTTTTG	2	12	501548	501559	0 %	83.33 %	16.67 %	0 %	Non-Coding
33	NC_003296	CGTCGA	2	12	518072	518083	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
34	NC_003296	CGGCGC	2	12	523443	523454	0 %	0 %	50 %	50 %	Non-Coding
35	NC_003296	GGGCGT	2	12	554410	554421	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
36	NC_003296	TTCCAT	2	12	607847	607858	16.67 %	50 %	0 %	33.33 %	Non-Coding
37	NC_003296	GTCCCG	2	12	700866	700877	0 %	16.67 %	33.33 %	50 %	Non-Coding
38	NC_003296	GCCCAA	2	12	703432	703443	33.33 %	0 %	16.67 %	50 %	Non-Coding
39	NC_003296	GAGCAG	2	12	703678	703689	33.33 %	0 %	50 %	16.67 %	Non-Coding
40	NC_003296	GAAAAA	2	12	718064	718075	83.33 %	0 %	16.67 %	0 %	Non-Coding
41	NC_003296	CTTGAT	2	12	722227	722238	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
42	NC_003296	CGGGGC	2	12	744098	744109	0 %	0 %	66.67 %	33.33 %	Non-Coding
43	NC_003296	AGGGCA	2	12	757064	757075	33.33 %	0 %	50 %	16.67 %	Non-Coding
44	NC_003296	CCCCAA	2	12	757373	757384	33.33 %	0 %	0 %	66.67 %	Non-Coding
45	NC_003296	AGACGT	2	12	773148	773159	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
46	NC_003296	GGAGCG	2	12	775406	775417	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
47	NC_003296	TGCGCG	2	12	820821	820832	0 %	16.67 %	50 %	33.33 %	Non-Coding
48	NC_003296	GGGGCG	2	12	902873	902884	0 %	0 %	83.33 %	16.67 %	Non-Coding
49	NC_003296	TTTTGA	2	12	916774	916785	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
50	NC_003296	AATACG	2	12	917325	917336	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
51	NC_003296	GCGAAG	2	12	919390	919401	33.33 %	0 %	50 %	16.67 %	Non-Coding
52	NC_003296	CCCGGC	2	12	957011	957022	0 %	0 %	33.33 %	66.67 %	Non-Coding
53	NC_003296	CGCGTG	2	12	999575	999586	0 %	16.67 %	50 %	33.33 %	Non-Coding
54	NC_003296	GCGGCA	2	12	1001300	1001311	16.67 %	0 %	50 %	33.33 %	Non-Coding
55	NC_003296	GCGCGT	2	12	1002655	1002666	0 %	16.67 %	50 %	33.33 %	Non-Coding
56	NC_003296	TCACGC	2	12	1010943	1010954	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
57	NC_003296	TGGCGA	3	18	1013661	1013678	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
58	NC_003296	CGTGCG	2	12	1021343	1021354	0 %	16.67 %	50 %	33.33 %	Non-Coding
59	NC_003296	AGAACG	2	12	1036067	1036078	50 %	0 %	33.33 %	16.67 %	Non-Coding
60	NC_003296	GCGCGG	2	12	1058900	1058911	0 %	0 %	66.67 %	33.33 %	Non-Coding
61	NC_003296	GGGGTC	2	12	1093008	1093019	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
62	NC_003296	ATGCTC	2	12	1117461	1117472	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
63	NC_003296	GGCCGG	2	12	1124504	1124515	0 %	0 %	66.67 %	33.33 %	Non-Coding
64	NC_003296	CGCCTG	2	12	1141288	1141299	0 %	16.67 %	33.33 %	50 %	Non-Coding
65	NC_003296	GGCGAC	2	12	1156498	1156509	16.67 %	0 %	50 %	33.33 %	Non-Coding
66	NC_003296	GAGACG	2	12	1156533	1156544	33.33 %	0 %	50 %	16.67 %	Non-Coding
67	NC_003296	CGAATG	2	12	1178892	1178903	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
68	NC_003296	GCCACG	2	12	1237542	1237553	16.67 %	0 %	33.33 %	50 %	Non-Coding
69	NC_003296	GCCGGC	2	12	1241291	1241302	0 %	0 %	50 %	50 %	Non-Coding
70	NC_003296	AGTTCG	2	12	1258996	1259007	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
71	NC_003296	TCCCCC	2	12	1260925	1260936	0 %	16.67 %	0 %	83.33 %	Non-Coding
72	NC_003296	ACCGCC	2	12	1308992	1309003	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
73	NC_003296	CAGAAT	2	12	1323488	1323499	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
74	NC_003296	GGCGCG	2	12	1340381	1340392	0 %	0 %	66.67 %	33.33 %	Non-Coding
75	NC_003296	AAACCG	2	12	1382979	1382990	50 %	0 %	16.67 %	33.33 %	Non-Coding
76	NC_003296	GCAACC	2	12	1388507	1388518	33.33 %	0 %	16.67 %	50 %	Non-Coding
77	NC_003296	GGAAAT	2	12	1404170	1404181	50 %	16.67 %	33.33 %	0 %	Non-Coding
78	NC_003296	CGCCGG	2	12	1413010	1413021	0 %	0 %	50 %	50 %	Non-Coding
79	NC_003296	CGGCCC	2	12	1441335	1441346	0 %	0 %	33.33 %	66.67 %	Non-Coding
80	NC_003296	GGCTGC	4	24	1459579	1459602	0 %	16.67 %	50 %	33.33 %	Non-Coding
81	NC_003296	CTGCCG	2	12	1464383	1464394	0 %	16.67 %	33.33 %	50 %	Non-Coding
82	NC_003296	TCCGGC	2	12	1476124	1476135	0 %	16.67 %	33.33 %	50 %	Non-Coding
83	NC_003296	AGCGCC	2	12	1486354	1486365	16.67 %	0 %	33.33 %	50 %	Non-Coding
84	NC_003296	ATTCAA	2	12	1488121	1488132	50 %	33.33 %	0 %	16.67 %	Non-Coding
85	NC_003296	CCCGCC	2	12	1537262	1537273	0 %	0 %	16.67 %	83.33 %	Non-Coding
86	NC_003296	GCCGGC	2	12	1549240	1549251	0 %	0 %	50 %	50 %	Non-Coding
87	NC_003296	CGCAAA	2	12	1549405	1549416	50 %	0 %	16.67 %	33.33 %	Non-Coding
88	NC_003296	CCGACA	2	12	1570602	1570613	33.33 %	0 %	16.67 %	50 %	Non-Coding
89	NC_003296	GGCGAT	2	12	1573387	1573398	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
90	NC_003296	CGCCGG	2	12	1594789	1594800	0 %	0 %	50 %	50 %	Non-Coding
91	NC_003296	TGAGCA	2	12	1636331	1636342	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
92	NC_003296	CAACCG	2	12	1665395	1665406	33.33 %	0 %	16.67 %	50 %	Non-Coding
93	NC_003296	GCCTCC	2	12	1670661	1670672	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
94	NC_003296	CAACCG	2	12	1695585	1695596	33.33 %	0 %	16.67 %	50 %	Non-Coding
95	NC_003296	GCCTCC	2	12	1700851	1700862	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
96	NC_003296	TGCTGT	2	12	1714364	1714375	0 %	50 %	33.33 %	16.67 %	Non-Coding
97	NC_003296	TCGCCA	2	12	1728738	1728749	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
98	NC_003296	CAAGCG	2	12	1736660	1736671	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
99	NC_003296	CATCGA	2	12	1747850	1747861	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
100	NC_003296	GGGAAC	2	12	1757484	1757495	33.33 %	0 %	50 %	16.67 %	Non-Coding
101	NC_003296	TACGTT	2	12	1761407	1761418	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
102	NC_003296	CCCCTT	2	12	1776486	1776497	0 %	33.33 %	0 %	66.67 %	Non-Coding
103	NC_003296	TCTACT	2	12	1777744	1777755	16.67 %	50 %	0 %	33.33 %	Non-Coding
104	NC_003296	ACGGCC	2	12	1819402	1819413	16.67 %	0 %	33.33 %	50 %	Non-Coding
105	NC_003296	ACCGCC	2	12	1819416	1819427	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
106	NC_003296	ATGCGG	4	24	1828214	1828237	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
107	NC_003296	CCATCC	2	12	1853307	1853318	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
108	NC_003296	CAAGCC	2	12	1882588	1882599	33.33 %	0 %	16.67 %	50 %	Non-Coding
109	NC_003296	GCACGC	2	12	1912272	1912283	16.67 %	0 %	33.33 %	50 %	Non-Coding
110	NC_003296	TGCCTT	2	12	1915992	1916003	0 %	50 %	16.67 %	33.33 %	Non-Coding
111	NC_003296	GGCAGC	2	12	1919646	1919657	16.67 %	0 %	50 %	33.33 %	Non-Coding
112	NC_003296	GGCATC	2	12	2045336	2045347	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
113	NC_003296	TTCCGA	2	12	2051772	2051783	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
114	NC_003296	AATTCA	2	12	2071213	2071224	50 %	33.33 %	0 %	16.67 %	Non-Coding
115	NC_003296	TGGCGA	2	12	2086415	2086426	16.67 %	16.67 %	50 %	16.67 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.