MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Ralstonia solanacearum GMI1000 chromosome

Total Repeats: 172

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_003295	GCCGGG	2	12	14934	14945	0 %	0 %	66.67 %	33.33 %	Non-Coding
2	NC_003295	TCGCGC	2	12	24159	24170	0 %	16.67 %	33.33 %	50 %	Non-Coding
3	NC_003295	CGTACG	2	12	24555	24566	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
4	NC_003295	TAGCCA	2	12	122058	122069	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
5	NC_003295	AGATAA	2	12	122079	122090	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
6	NC_003295	TTGAGG	2	12	123240	123251	16.67 %	33.33 %	50 %	0 %	Non-Coding
7	NC_003295	CCGGCG	2	12	133891	133902	0 %	0 %	50 %	50 %	Non-Coding
8	NC_003295	GAGCGA	2	12	205267	205278	33.33 %	0 %	50 %	16.67 %	Non-Coding
9	NC_003295	AATGGA	2	12	318250	318261	50 %	16.67 %	33.33 %	0 %	Non-Coding
10	NC_003295	CCCGGA	2	12	321673	321684	16.67 %	0 %	33.33 %	50 %	Non-Coding
11	NC_003295	GGGATG	2	12	323581	323592	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
12	NC_003295	GCGCCG	2	12	341449	341460	0 %	0 %	50 %	50 %	Non-Coding
13	NC_003295	CGGCGC	2	12	347944	347955	0 %	0 %	50 %	50 %	Non-Coding
14	NC_003295	ATCGGC	2	12	389200	389211	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
15	NC_003295	AAAATG	2	12	391794	391805	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
16	NC_003295	CCGGGG	2	12	414952	414963	0 %	0 %	66.67 %	33.33 %	Non-Coding
17	NC_003295	CAGGAG	2	12	414964	414975	33.33 %	0 %	50 %	16.67 %	Non-Coding
18	NC_003295	CCGCCC	2	12	429940	429951	0 %	0 %	16.67 %	83.33 %	Non-Coding
19	NC_003295	GTGATG	2	12	452223	452234	16.67 %	33.33 %	50 %	0 %	Non-Coding
20	NC_003295	CCACGC	2	12	486738	486749	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
21	NC_003295	TGCCGC	2	12	500075	500086	0 %	16.67 %	33.33 %	50 %	Non-Coding
22	NC_003295	AGGAAG	2	12	515576	515587	50 %	0 %	50 %	0 %	Non-Coding
23	NC_003295	GCCTGC	2	12	517191	517202	0 %	16.67 %	33.33 %	50 %	Non-Coding
24	NC_003295	CCATCG	2	12	522453	522464	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
25	NC_003295	GATGGT	2	12	572729	572740	16.67 %	33.33 %	50 %	0 %	Non-Coding
26	NC_003295	TTGAGG	2	12	575589	575600	16.67 %	33.33 %	50 %	0 %	Non-Coding
27	NC_003295	CCGTTC	2	12	576165	576176	0 %	33.33 %	16.67 %	50 %	Non-Coding
28	NC_003295	CCACGG	2	12	590689	590700	16.67 %	0 %	33.33 %	50 %	Non-Coding
29	NC_003295	ACGCGA	2	12	599965	599976	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
30	NC_003295	CAATTT	2	12	625554	625565	33.33 %	50 %	0 %	16.67 %	Non-Coding
31	NC_003295	CGATCA	2	12	634784	634795	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
32	NC_003295	GGCCCG	2	12	636415	636426	0 %	0 %	50 %	50 %	Non-Coding
33	NC_003295	ACAGAC	2	12	644368	644379	50 %	0 %	16.67 %	33.33 %	Non-Coding
34	NC_003295	TTTGGA	2	12	664311	664322	16.67 %	50 %	33.33 %	0 %	Non-Coding
35	NC_003295	GCAAGC	2	12	685539	685550	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
36	NC_003295	ATTTCG	2	12	692975	692986	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
37	NC_003295	CCGCAA	2	12	695318	695329	33.33 %	0 %	16.67 %	50 %	Non-Coding
38	NC_003295	TTCGAA	2	12	700241	700252	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
39	NC_003295	GCTTCA	2	12	703808	703819	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
40	NC_003295	TTTCTG	2	12	705796	705807	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
41	NC_003295	CGGGCG	2	12	749185	749196	0 %	0 %	66.67 %	33.33 %	Non-Coding
42	NC_003295	TCCGCC	2	12	752454	752465	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
43	NC_003295	GGCGCC	2	12	754900	754911	0 %	0 %	50 %	50 %	Non-Coding
44	NC_003295	AGGGCG	2	12	758295	758306	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
45	NC_003295	CGGGGG	2	12	828100	828111	0 %	0 %	83.33 %	16.67 %	Non-Coding
46	NC_003295	CATTCC	2	12	829368	829379	16.67 %	33.33 %	0 %	50 %	Non-Coding
47	NC_003295	TCTTCA	2	12	865751	865762	16.67 %	50 %	0 %	33.33 %	Non-Coding
48	NC_003295	CGTGGC	2	12	947091	947102	0 %	16.67 %	50 %	33.33 %	Non-Coding
49	NC_003295	CCGAGG	2	12	980226	980237	16.67 %	0 %	50 %	33.33 %	Non-Coding
50	NC_003295	GCCTTT	2	12	1013088	1013099	0 %	50 %	16.67 %	33.33 %	Non-Coding
51	NC_003295	AAAGAG	2	12	1017033	1017044	66.67 %	0 %	33.33 %	0 %	Non-Coding
52	NC_003295	GCTCCG	2	12	1102191	1102202	0 %	16.67 %	33.33 %	50 %	Non-Coding
53	NC_003295	TGCCGG	2	12	1151797	1151808	0 %	16.67 %	50 %	33.33 %	Non-Coding
54	NC_003295	CTTCGT	2	12	1151876	1151887	0 %	50 %	16.67 %	33.33 %	Non-Coding
55	NC_003295	AGGGGG	2	12	1164838	1164849	16.67 %	0 %	83.33 %	0 %	Non-Coding
56	NC_003295	CAGGCA	2	12	1169175	1169186	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
57	NC_003295	TTTGAC	2	12	1169249	1169260	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
58	NC_003295	CGATGA	2	12	1170390	1170401	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
59	NC_003295	GCGCGG	2	12	1170883	1170894	0 %	0 %	66.67 %	33.33 %	Non-Coding
60	NC_003295	TTTACG	2	12	1200730	1200741	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
61	NC_003295	TACGGC	2	12	1248649	1248660	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
62	NC_003295	GCGCCC	2	12	1304521	1304532	0 %	0 %	33.33 %	66.67 %	Non-Coding
63	NC_003295	GATTGG	2	12	1341673	1341684	16.67 %	33.33 %	50 %	0 %	Non-Coding
64	NC_003295	CCGGGC	2	12	1366742	1366753	0 %	0 %	50 %	50 %	Non-Coding
65	NC_003295	GTGGCG	2	12	1402316	1402327	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
66	NC_003295	GCGCGG	2	12	1423627	1423638	0 %	0 %	66.67 %	33.33 %	Non-Coding
67	NC_003295	GTCATG	2	12	1445523	1445534	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
68	NC_003295	CAGGCC	2	12	1489911	1489922	16.67 %	0 %	33.33 %	50 %	Non-Coding
69	NC_003295	GGCCCG	2	12	1491011	1491022	0 %	0 %	50 %	50 %	Non-Coding
70	NC_003295	AAGCGA	2	12	1532301	1532312	50 %	0 %	33.33 %	16.67 %	Non-Coding
71	NC_003295	CCTACC	2	12	1543077	1543088	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
72	NC_003295	GCATCC	2	12	1555926	1555937	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
73	NC_003295	GCCCGC	2	12	1565732	1565743	0 %	0 %	33.33 %	66.67 %	Non-Coding
74	NC_003295	GCTCGC	2	12	1565766	1565777	0 %	16.67 %	33.33 %	50 %	Non-Coding
75	NC_003295	GCACCC	2	12	1577669	1577680	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
76	NC_003295	GCAAGA	2	12	1583654	1583665	50 %	0 %	33.33 %	16.67 %	Non-Coding
77	NC_003295	GCGCGA	2	12	1595549	1595560	16.67 %	0 %	50 %	33.33 %	Non-Coding
78	NC_003295	CATCCG	2	12	1653871	1653882	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
79	NC_003295	CGCGCC	2	12	1660825	1660836	0 %	0 %	33.33 %	66.67 %	Non-Coding
80	NC_003295	AGCATG	2	12	1728258	1728269	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
81	NC_003295	TGCCGC	2	12	1728642	1728653	0 %	16.67 %	33.33 %	50 %	Non-Coding
82	NC_003295	CATCGC	2	12	1798775	1798786	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
83	NC_003295	CAAGGC	2	12	1800025	1800036	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
84	NC_003295	GCGGGC	2	12	1806455	1806466	0 %	0 %	66.67 %	33.33 %	Non-Coding
85	NC_003295	CAATTG	2	12	1814145	1814156	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
86	NC_003295	TTTGGC	2	12	1855311	1855322	0 %	50 %	33.33 %	16.67 %	Non-Coding
87	NC_003295	CGGGGC	2	12	1855352	1855363	0 %	0 %	66.67 %	33.33 %	Non-Coding
88	NC_003295	CCGGCA	2	12	1856501	1856512	16.67 %	0 %	33.33 %	50 %	Non-Coding
89	NC_003295	CGATGG	2	12	1856781	1856792	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
90	NC_003295	ATACGC	2	12	1884175	1884186	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
91	NC_003295	AATTCA	2	12	1911231	1911242	50 %	33.33 %	0 %	16.67 %	Non-Coding
92	NC_003295	TTTAAT	2	12	1912208	1912219	33.33 %	66.67 %	0 %	0 %	Non-Coding
93	NC_003295	ATCGCA	2	12	1916370	1916381	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
94	NC_003295	GTCCCT	2	12	2083826	2083837	0 %	33.33 %	16.67 %	50 %	Non-Coding
95	NC_003295	TTTTTC	2	12	2125195	2125206	0 %	83.33 %	0 %	16.67 %	Non-Coding
96	NC_003295	ATGCCG	2	12	2204091	2204102	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
97	NC_003295	GCGCGG	2	12	2217098	2217109	0 %	0 %	66.67 %	33.33 %	Non-Coding
98	NC_003295	TCGGGA	2	12	2238630	2238641	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
99	NC_003295	CCGCCC	2	12	2256688	2256699	0 %	0 %	16.67 %	83.33 %	Non-Coding
100	NC_003295	CTTCCC	2	12	2275681	2275692	0 %	33.33 %	0 %	66.67 %	Non-Coding
101	NC_003295	GCCGGC	2	12	2316754	2316765	0 %	0 %	50 %	50 %	Non-Coding
102	NC_003295	ACCGCT	2	12	2347486	2347497	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
103	NC_003295	GGATCG	2	12	2356042	2356053	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
104	NC_003295	CGAGCG	2	12	2369934	2369945	16.67 %	0 %	50 %	33.33 %	Non-Coding
105	NC_003295	CGGGCG	2	12	2396566	2396577	0 %	0 %	66.67 %	33.33 %	Non-Coding
106	NC_003295	CTTCAC	2	12	2402436	2402447	16.67 %	33.33 %	0 %	50 %	Non-Coding
107	NC_003295	CACGGA	2	12	2433155	2433166	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
108	NC_003295	CCCCCT	2	12	2447405	2447416	0 %	16.67 %	0 %	83.33 %	Non-Coding
109	NC_003295	CCGGCC	2	12	2449222	2449233	0 %	0 %	33.33 %	66.67 %	Non-Coding
110	NC_003295	GTGGCC	2	12	2474665	2474676	0 %	16.67 %	50 %	33.33 %	Non-Coding
111	NC_003295	CCCCCT	2	12	2511396	2511407	0 %	16.67 %	0 %	83.33 %	Non-Coding
112	NC_003295	CCGGCC	2	12	2536181	2536192	0 %	0 %	33.33 %	66.67 %	Non-Coding
113	NC_003295	CCCTCA	2	12	2541296	2541307	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
114	NC_003295	CCGGCC	2	12	2593718	2593729	0 %	0 %	33.33 %	66.67 %	Non-Coding
115	NC_003295	TACATC	2	12	2675838	2675849	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
116	NC_003295	ACCGGG	2	12	2736676	2736687	16.67 %	0 %	50 %	33.33 %	Non-Coding
117	NC_003295	TGACGT	2	12	2741372	2741383	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
118	NC_003295	GTTCTT	2	12	2761095	2761106	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
119	NC_003295	GCAAAA	2	12	2764697	2764708	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
120	NC_003295	CCTGCC	2	12	2818961	2818972	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
121	NC_003295	GGCGAG	2	12	2822673	2822684	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
122	NC_003295	CCACCT	2	12	2849817	2849828	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
123	NC_003295	CGCGCA	2	12	2870851	2870862	16.67 %	0 %	33.33 %	50 %	Non-Coding
124	NC_003295	ACTTCC	2	12	2907140	2907151	16.67 %	33.33 %	0 %	50 %	Non-Coding
125	NC_003295	ACCGGC	2	12	2922509	2922520	16.67 %	0 %	33.33 %	50 %	Non-Coding
126	NC_003295	CGGCGC	2	12	2948377	2948388	0 %	0 %	50 %	50 %	Non-Coding
127	NC_003295	AAACAG	2	12	2949810	2949821	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
128	NC_003295	ATGACG	2	12	2956030	2956041	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
129	NC_003295	CCTCCA	2	12	2995270	2995281	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
130	NC_003295	CGGCAT	2	12	2997070	2997081	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
131	NC_003295	TCAACG	2	12	3004739	3004750	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
132	NC_003295	CCCCTG	2	12	3007589	3007600	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
133	NC_003295	CGGCGA	2	12	3094100	3094111	16.67 %	0 %	50 %	33.33 %	Non-Coding
134	NC_003295	GCTTTC	2	12	3101411	3101422	0 %	50 %	16.67 %	33.33 %	Non-Coding
135	NC_003295	CCTGGC	2	12	3108620	3108631	0 %	16.67 %	33.33 %	50 %	Non-Coding
136	NC_003295	CACGCG	2	12	3123096	3123107	16.67 %	0 %	33.33 %	50 %	Non-Coding
137	NC_003295	CCCCGA	2	12	3129681	3129692	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
138	NC_003295	AAAACG	2	12	3157649	3157660	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
139	NC_003295	CAAACC	2	12	3163455	3163466	50 %	0 %	0 %	50 %	Non-Coding
140	NC_003295	GACCCG	2	12	3176558	3176569	16.67 %	0 %	33.33 %	50 %	Non-Coding
141	NC_003295	GCTCGG	2	12	3181811	3181822	0 %	16.67 %	50 %	33.33 %	Non-Coding
142	NC_003295	CGCCGA	2	12	3208578	3208589	16.67 %	0 %	33.33 %	50 %	Non-Coding
143	NC_003295	CGCGCC	2	12	3214891	3214902	0 %	0 %	33.33 %	66.67 %	Non-Coding
144	NC_003295	GCTTTC	2	12	3279621	3279632	0 %	50 %	16.67 %	33.33 %	Non-Coding
145	NC_003295	GCGCCA	2	12	3294480	3294491	16.67 %	0 %	33.33 %	50 %	Non-Coding
146	NC_003295	CGCACG	2	12	3297350	3297361	16.67 %	0 %	33.33 %	50 %	Non-Coding
147	NC_003295	GGTGAG	2	12	3323382	3323393	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
148	NC_003295	GCGTGC	2	12	3323612	3323623	0 %	16.67 %	50 %	33.33 %	Non-Coding
149	NC_003295	GACAGC	2	12	3326227	3326238	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
150	NC_003295	CGCGAC	2	12	3369035	3369046	16.67 %	0 %	33.33 %	50 %	Non-Coding
151	NC_003295	CGCACA	2	12	3378742	3378753	33.33 %	0 %	16.67 %	50 %	Non-Coding
152	NC_003295	TCTCAT	2	12	3381628	3381639	16.67 %	50 %	0 %	33.33 %	Non-Coding
153	NC_003295	GCCTGC	2	12	3401754	3401765	0 %	16.67 %	33.33 %	50 %	Non-Coding
154	NC_003295	GCGGAT	2	12	3403948	3403959	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
155	NC_003295	GTAGCG	2	12	3433970	3433981	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
156	NC_003295	AAAGGG	2	12	3458673	3458684	50 %	0 %	50 %	0 %	Non-Coding
157	NC_003295	CTTGGG	2	12	3495255	3495266	0 %	33.33 %	50 %	16.67 %	Non-Coding
158	NC_003295	ATTTCG	2	12	3495368	3495379	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
159	NC_003295	CGGCGC	2	12	3522430	3522441	0 %	0 %	50 %	50 %	Non-Coding
160	NC_003295	GCGATG	2	12	3529563	3529574	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
161	NC_003295	AGGGCA	2	12	3533622	3533633	33.33 %	0 %	50 %	16.67 %	Non-Coding
162	NC_003295	TGCGCG	2	12	3540310	3540321	0 %	16.67 %	50 %	33.33 %	Non-Coding
163	NC_003295	CATCCT	2	12	3547083	3547094	16.67 %	33.33 %	0 %	50 %	Non-Coding
164	NC_003295	AGGGCA	2	12	3552316	3552327	33.33 %	0 %	50 %	16.67 %	Non-Coding
165	NC_003295	GTGACA	2	12	3624074	3624085	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
166	NC_003295	CGGGCG	2	12	3635089	3635100	0 %	0 %	66.67 %	33.33 %	Non-Coding
167	NC_003295	GTAGGT	2	12	3636694	3636705	16.67 %	33.33 %	50 %	0 %	Non-Coding
168	NC_003295	GCGCCG	2	12	3657913	3657924	0 %	0 %	50 %	50 %	Non-Coding
169	NC_003295	GCCTGC	2	12	3657935	3657946	0 %	16.67 %	33.33 %	50 %	Non-Coding
170	NC_003295	GGCCTG	2	12	3659213	3659224	0 %	16.67 %	50 %	33.33 %	Non-Coding
171	NC_003295	GCCCTT	2	12	3688033	3688044	0 %	33.33 %	16.67 %	50 %	Non-Coding
172	NC_003295	GCCATC	2	12	3692082	3692093	16.67 %	16.67 %	16.67 %	50 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.