MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Clostridium perfringens str. 13 plasmid pCP13

Total Repeats: 119

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_003042	ATT	2	6	157	162	33.33 %	66.67 %	0 %	0 %	Non-Coding
2	NC_003042	ATT	3	9	166	174	33.33 %	66.67 %	0 %	0 %	Non-Coding
3	NC_003042	CCT	2	6	193	198	0 %	33.33 %	0 %	66.67 %	Non-Coding
4	NC_003042	TTA	2	6	381	386	33.33 %	66.67 %	0 %	0 %	Non-Coding
5	NC_003042	TTA	3	9	478	486	33.33 %	66.67 %	0 %	0 %	Non-Coding
6	NC_003042	ATT	2	6	513	518	33.33 %	66.67 %	0 %	0 %	Non-Coding
7	NC_003042	AGA	2	6	581	586	66.67 %	0 %	33.33 %	0 %	Non-Coding
8	NC_003042	CTT	2	6	596	601	0 %	66.67 %	0 %	33.33 %	Non-Coding
9	NC_003042	AGC	2	6	701	706	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
10	NC_003042	CAA	2	6	762	767	66.67 %	0 %	0 %	33.33 %	Non-Coding
11	NC_003042	CAA	2	6	773	778	66.67 %	0 %	0 %	33.33 %	Non-Coding
12	NC_003042	GTT	2	6	799	804	0 %	66.67 %	33.33 %	0 %	Non-Coding
13	NC_003042	GGT	2	6	1736	1741	0 %	33.33 %	66.67 %	0 %	Non-Coding
14	NC_003042	GAT	2	6	3043	3048	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
15	NC_003042	TAT	2	6	3538	3543	33.33 %	66.67 %	0 %	0 %	Non-Coding
16	NC_003042	ATA	2	6	3546	3551	66.67 %	33.33 %	0 %	0 %	Non-Coding
17	NC_003042	TAA	2	6	3592	3597	66.67 %	33.33 %	0 %	0 %	Non-Coding
18	NC_003042	ATT	2	6	3598	3603	33.33 %	66.67 %	0 %	0 %	Non-Coding
19	NC_003042	AAT	2	6	3680	3685	66.67 %	33.33 %	0 %	0 %	Non-Coding
20	NC_003042	CTT	3	9	3708	3716	0 %	66.67 %	0 %	33.33 %	Non-Coding
21	NC_003042	AAT	2	6	3720	3725	66.67 %	33.33 %	0 %	0 %	Non-Coding
22	NC_003042	AAG	3	9	3746	3754	66.67 %	0 %	33.33 %	0 %	Non-Coding
23	NC_003042	TTG	2	6	4299	4304	0 %	66.67 %	33.33 %	0 %	Non-Coding
24	NC_003042	TTA	2	6	4323	4328	33.33 %	66.67 %	0 %	0 %	Non-Coding
25	NC_003042	TAA	2	6	4407	4412	66.67 %	33.33 %	0 %	0 %	Non-Coding
26	NC_003042	AAG	2	6	4463	4468	66.67 %	0 %	33.33 %	0 %	Non-Coding
27	NC_003042	TCA	2	6	4515	4520	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
28	NC_003042	AGG	2	6	4529	4534	33.33 %	0 %	66.67 %	0 %	Non-Coding
29	NC_003042	TAT	2	6	4860	4865	33.33 %	66.67 %	0 %	0 %	Non-Coding
30	NC_003042	TAT	2	6	4870	4875	33.33 %	66.67 %	0 %	0 %	Non-Coding
31	NC_003042	TAG	2	6	4903	4908	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
32	NC_003042	TAT	2	6	4943	4948	33.33 %	66.67 %	0 %	0 %	Non-Coding
33	NC_003042	TAT	3	9	5018	5026	33.33 %	66.67 %	0 %	0 %	Non-Coding
34	NC_003042	TAA	3	9	5041	5049	66.67 %	33.33 %	0 %	0 %	Non-Coding
35	NC_003042	TAA	2	6	5064	5069	66.67 %	33.33 %	0 %	0 %	Non-Coding
36	NC_003042	AAT	2	6	5081	5086	66.67 %	33.33 %	0 %	0 %	Non-Coding
37	NC_003042	AGC	2	6	5106	5111	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
38	NC_003042	TCT	2	6	5124	5129	0 %	66.67 %	0 %	33.33 %	Non-Coding
39	NC_003042	TAT	2	6	5151	5156	33.33 %	66.67 %	0 %	0 %	Non-Coding
40	NC_003042	ATT	3	9	8007	8015	33.33 %	66.67 %	0 %	0 %	Non-Coding
41	NC_003042	CTC	2	6	8470	8475	0 %	33.33 %	0 %	66.67 %	Non-Coding
42	NC_003042	AAT	2	6	8480	8485	66.67 %	33.33 %	0 %	0 %	Non-Coding
43	NC_003042	TTA	2	6	8486	8491	33.33 %	66.67 %	0 %	0 %	Non-Coding
44	NC_003042	TAA	2	6	8514	8519	66.67 %	33.33 %	0 %	0 %	Non-Coding
45	NC_003042	AGA	2	6	8718	8723	66.67 %	0 %	33.33 %	0 %	Non-Coding
46	NC_003042	TTG	2	6	8732	8737	0 %	66.67 %	33.33 %	0 %	Non-Coding
47	NC_003042	ATG	2	6	9113	9118	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
48	NC_003042	TAT	2	6	9416	9421	33.33 %	66.67 %	0 %	0 %	Non-Coding
49	NC_003042	AAG	2	6	9426	9431	66.67 %	0 %	33.33 %	0 %	Non-Coding
50	NC_003042	ATA	2	6	9434	9439	66.67 %	33.33 %	0 %	0 %	Non-Coding
51	NC_003042	TAT	2	6	9466	9471	33.33 %	66.67 %	0 %	0 %	Non-Coding
52	NC_003042	ATA	2	6	9999	10004	66.67 %	33.33 %	0 %	0 %	Non-Coding
53	NC_003042	CCT	2	6	10288	10293	0 %	33.33 %	0 %	66.67 %	Non-Coding
54	NC_003042	ACA	2	6	10352	10357	66.67 %	0 %	0 %	33.33 %	Non-Coding
55	NC_003042	GTT	2	6	11166	11171	0 %	66.67 %	33.33 %	0 %	Non-Coding
56	NC_003042	AAT	2	6	11310	11315	66.67 %	33.33 %	0 %	0 %	Non-Coding
57	NC_003042	TAT	3	9	11957	11965	33.33 %	66.67 %	0 %	0 %	Non-Coding
58	NC_003042	TAG	2	6	12024	12029	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
59	NC_003042	ATA	2	6	12054	12059	66.67 %	33.33 %	0 %	0 %	Non-Coding
60	NC_003042	TAA	2	6	12080	12085	66.67 %	33.33 %	0 %	0 %	Non-Coding
61	NC_003042	TAT	2	6	13372	13377	33.33 %	66.67 %	0 %	0 %	Non-Coding
62	NC_003042	TAT	2	6	13415	13420	33.33 %	66.67 %	0 %	0 %	Non-Coding
63	NC_003042	TAA	2	6	13427	13432	66.67 %	33.33 %	0 %	0 %	Non-Coding
64	NC_003042	ATT	2	6	13581	13586	33.33 %	66.67 %	0 %	0 %	Non-Coding
65	NC_003042	TCC	2	6	15128	15133	0 %	33.33 %	0 %	66.67 %	Non-Coding
66	NC_003042	TAA	2	6	15642	15647	66.67 %	33.33 %	0 %	0 %	Non-Coding
67	NC_003042	TTA	2	6	15741	15746	33.33 %	66.67 %	0 %	0 %	Non-Coding
68	NC_003042	CTT	2	6	15780	15785	0 %	66.67 %	0 %	33.33 %	Non-Coding
69	NC_003042	AGC	2	6	15886	15891	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
70	NC_003042	CAA	2	6	15948	15953	66.67 %	0 %	0 %	33.33 %	Non-Coding
71	NC_003042	AGG	2	6	15994	15999	33.33 %	0 %	66.67 %	0 %	Non-Coding
72	NC_003042	AAG	2	6	16305	16310	66.67 %	0 %	33.33 %	0 %	Non-Coding
73	NC_003042	TAA	2	6	16315	16320	66.67 %	33.33 %	0 %	0 %	Non-Coding
74	NC_003042	TAA	2	6	16764	16769	66.67 %	33.33 %	0 %	0 %	Non-Coding
75	NC_003042	GGT	2	6	17148	17153	0 %	33.33 %	66.67 %	0 %	Non-Coding
76	NC_003042	CTT	2	6	17512	17517	0 %	66.67 %	0 %	33.33 %	Non-Coding
77	NC_003042	AGC	2	6	17618	17623	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
78	NC_003042	CAA	2	6	17679	17684	66.67 %	0 %	0 %	33.33 %	Non-Coding
79	NC_003042	AGG	2	6	17725	17730	33.33 %	0 %	66.67 %	0 %	Non-Coding
80	NC_003042	AAG	2	6	17957	17962	66.67 %	0 %	33.33 %	0 %	Non-Coding
81	NC_003042	CTT	2	6	17983	17988	0 %	66.67 %	0 %	33.33 %	Non-Coding
82	NC_003042	AGG	2	6	18003	18008	33.33 %	0 %	66.67 %	0 %	Non-Coding
83	NC_003042	ATT	2	6	18434	18439	33.33 %	66.67 %	0 %	0 %	Non-Coding
84	NC_003042	ATT	2	6	18548	18553	33.33 %	66.67 %	0 %	0 %	Non-Coding
85	NC_003042	AGG	2	6	19708	19713	33.33 %	0 %	66.67 %	0 %	Non-Coding
86	NC_003042	CCT	2	6	19931	19936	0 %	33.33 %	0 %	66.67 %	Non-Coding
87	NC_003042	ATA	2	6	20454	20459	66.67 %	33.33 %	0 %	0 %	Non-Coding
88	NC_003042	AAT	2	6	20575	20580	66.67 %	33.33 %	0 %	0 %	Non-Coding
89	NC_003042	AAT	2	6	20623	20628	66.67 %	33.33 %	0 %	0 %	Non-Coding
90	NC_003042	ATT	2	6	21496	21501	33.33 %	66.67 %	0 %	0 %	Non-Coding
91	NC_003042	AGA	2	6	21524	21529	66.67 %	0 %	33.33 %	0 %	Non-Coding
92	NC_003042	GAT	2	6	21578	21583	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
93	NC_003042	GTA	2	6	22645	22650	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
94	NC_003042	TAT	2	6	23229	23234	33.33 %	66.67 %	0 %	0 %	Non-Coding
95	NC_003042	ATA	2	6	23289	23294	66.67 %	33.33 %	0 %	0 %	Non-Coding
96	NC_003042	TGT	2	6	23820	23825	0 %	66.67 %	33.33 %	0 %	Non-Coding
97	NC_003042	CTA	2	6	23924	23929	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
98	NC_003042	ATT	2	6	23968	23973	33.33 %	66.67 %	0 %	0 %	Non-Coding
99	NC_003042	TTA	2	6	24011	24016	33.33 %	66.67 %	0 %	0 %	Non-Coding
100	NC_003042	GAA	2	6	24569	24574	66.67 %	0 %	33.33 %	0 %	Non-Coding
101	NC_003042	TTC	2	6	24588	24593	0 %	66.67 %	0 %	33.33 %	Non-Coding
102	NC_003042	TCC	2	6	27411	27416	0 %	33.33 %	0 %	66.67 %	Non-Coding
103	NC_003042	TAA	2	6	27686	27691	66.67 %	33.33 %	0 %	0 %	Non-Coding
104	NC_003042	TCC	2	6	27973	27978	0 %	33.33 %	0 %	66.67 %	Non-Coding
105	NC_003042	TAA	2	6	31095	31100	66.67 %	33.33 %	0 %	0 %	Non-Coding
106	NC_003042	CCT	2	6	32339	32344	0 %	33.33 %	0 %	66.67 %	Non-Coding
107	NC_003042	CCT	2	6	37147	37152	0 %	33.33 %	0 %	66.67 %	Non-Coding
108	NC_003042	GCT	2	6	37923	37928	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
109	NC_003042	TAA	2	6	43640	43645	66.67 %	33.33 %	0 %	0 %	Non-Coding
110	NC_003042	TTC	2	6	45023	45028	0 %	66.67 %	0 %	33.33 %	Non-Coding
111	NC_003042	ATA	3	9	45045	45053	66.67 %	33.33 %	0 %	0 %	Non-Coding
112	NC_003042	ATA	2	6	45106	45111	66.67 %	33.33 %	0 %	0 %	Non-Coding
113	NC_003042	AAT	2	6	45116	45121	66.67 %	33.33 %	0 %	0 %	Non-Coding
114	NC_003042	TCT	2	6	49441	49446	0 %	66.67 %	0 %	33.33 %	Non-Coding
115	NC_003042	TGC	2	6	49476	49481	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
116	NC_003042	ATT	2	6	51071	51076	33.33 %	66.67 %	0 %	0 %	Non-Coding
117	NC_003042	AGA	2	6	51701	51706	66.67 %	0 %	33.33 %	0 %	Non-Coding
118	NC_003042	ACA	2	6	51769	51774	66.67 %	0 %	0 %	33.33 %	Non-Coding
119	NC_003042	TCT	2	6	54250	54255	0 %	66.67 %	0 %	33.33 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.