MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Coxiella burnetii RSA 493 chromosome

Total Repeats: 171

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_002971	ATTATA	2	12	8695	8706	50 %	50 %	0 %	0 %	Non-Coding
2	NC_002971	TTTTCT	2	12	12922	12933	0 %	83.33 %	0 %	16.67 %	Non-Coding
3	NC_002971	GCGCTT	2	12	23018	23029	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
4	NC_002971	TGAAAA	2	12	73135	73146	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
5	NC_002971	ACAAGA	2	12	81056	81067	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
6	NC_002971	GCAATT	2	12	81176	81187	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
7	NC_002971	TGGATA	2	12	146714	146725	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
8	NC_002971	TTGGCA	2	12	148939	148950	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
9	NC_002971	GTGCCT	2	12	151028	151039	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
10	NC_002971	TGAAAT	2	12	171023	171034	50 %	33.33 %	16.67 %	0 %	Non-Coding
11	NC_002971	TAATGC	2	12	174852	174863	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
12	NC_002971	ATTTAT	2	12	174872	174883	33.33 %	66.67 %	0 %	0 %	Non-Coding
13	NC_002971	TAAAAA	2	12	175324	175335	83.33 %	16.67 %	0 %	0 %	Non-Coding
14	NC_002971	TCCTGA	2	12	176068	176079	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
15	NC_002971	GTTTTT	2	12	177134	177145	0 %	83.33 %	16.67 %	0 %	Non-Coding
16	NC_002971	GTTGGC	2	12	193765	193776	0 %	33.33 %	50 %	16.67 %	Non-Coding
17	NC_002971	ACCGGA	2	12	196617	196628	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
18	NC_002971	TAAGGA	2	12	202154	202165	50 %	16.67 %	33.33 %	0 %	Non-Coding
19	NC_002971	TTTTTG	2	12	204599	204610	0 %	83.33 %	16.67 %	0 %	Non-Coding
20	NC_002971	GGAAGG	2	12	240769	240780	33.33 %	0 %	66.67 %	0 %	Non-Coding
21	NC_002971	GAAAGC	2	12	273339	273350	50 %	0 %	33.33 %	16.67 %	Non-Coding
22	NC_002971	ATTTTG	2	12	276867	276878	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
23	NC_002971	CGGGGC	2	12	279288	279299	0 %	0 %	66.67 %	33.33 %	Non-Coding
24	NC_002971	AACTGA	2	12	294204	294215	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
25	NC_002971	CCGATA	2	12	296410	296421	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
26	NC_002971	AACATC	2	12	324714	324725	50 %	16.67 %	0 %	33.33 %	Non-Coding
27	NC_002971	AAATTG	2	12	324782	324793	50 %	33.33 %	16.67 %	0 %	Non-Coding
28	NC_002971	ATTGAT	2	12	326366	326377	33.33 %	50 %	16.67 %	0 %	Non-Coding
29	NC_002971	TTTCCT	2	12	326941	326952	0 %	66.67 %	0 %	33.33 %	Non-Coding
30	NC_002971	AATATA	2	12	369074	369085	66.67 %	33.33 %	0 %	0 %	Non-Coding
31	NC_002971	AATTAA	2	12	369175	369186	66.67 %	33.33 %	0 %	0 %	Non-Coding
32	NC_002971	TTTTGA	2	12	369196	369207	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
33	NC_002971	AAAATA	2	12	369249	369260	83.33 %	16.67 %	0 %	0 %	Non-Coding
34	NC_002971	AGTGCA	2	12	373805	373816	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
35	NC_002971	TGTACA	2	12	374306	374317	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
36	NC_002971	ATTGAA	2	12	381654	381665	50 %	33.33 %	16.67 %	0 %	Non-Coding
37	NC_002971	CTGTTT	2	12	387813	387824	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
38	NC_002971	ATTCCG	2	12	432804	432815	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
39	NC_002971	TAATCC	2	12	451307	451318	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
40	NC_002971	CAAATC	2	12	452052	452063	50 %	16.67 %	0 %	33.33 %	Non-Coding
41	NC_002971	AATTTA	2	12	452635	452646	50 %	50 %	0 %	0 %	Non-Coding
42	NC_002971	TTTTCA	2	12	452947	452958	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
43	NC_002971	TTGGGG	2	12	455511	455522	0 %	33.33 %	66.67 %	0 %	Non-Coding
44	NC_002971	GCGCCA	2	12	477532	477543	16.67 %	0 %	33.33 %	50 %	Non-Coding
45	NC_002971	CTATTT	2	12	522013	522024	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
46	NC_002971	TCTTTC	2	12	549450	549461	0 %	66.67 %	0 %	33.33 %	Non-Coding
47	NC_002971	TAAAAC	2	12	550503	550514	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
48	NC_002971	CGAAAC	2	12	551903	551914	50 %	0 %	16.67 %	33.33 %	Non-Coding
49	NC_002971	AAGACA	2	12	599549	599560	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
50	NC_002971	GGCCGC	2	12	599635	599646	0 %	0 %	50 %	50 %	Non-Coding
51	NC_002971	TTAAAG	2	12	600527	600538	50 %	33.33 %	16.67 %	0 %	Non-Coding
52	NC_002971	AACGAG	2	12	656325	656336	50 %	0 %	33.33 %	16.67 %	Non-Coding
53	NC_002971	ATGGAA	2	12	665028	665039	50 %	16.67 %	33.33 %	0 %	Non-Coding
54	NC_002971	TGGGTA	2	12	671067	671078	16.67 %	33.33 %	50 %	0 %	Non-Coding
55	NC_002971	TTTAGT	2	12	676488	676499	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
56	NC_002971	GCCGTA	2	12	705723	705734	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
57	NC_002971	GCTTTT	2	12	706886	706897	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
58	NC_002971	TTGCTT	2	12	708358	708369	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
59	NC_002971	TTGCCT	2	12	708698	708709	0 %	50 %	16.67 %	33.33 %	Non-Coding
60	NC_002971	TTGGGA	2	12	754563	754574	16.67 %	33.33 %	50 %	0 %	Non-Coding
61	NC_002971	ATTGAG	2	12	765794	765805	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
62	NC_002971	TGAAAA	2	12	769821	769832	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
63	NC_002971	TTTCTT	2	12	824682	824693	0 %	83.33 %	0 %	16.67 %	Non-Coding
64	NC_002971	CTAAGA	2	12	839730	839741	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
65	NC_002971	ATAAGA	2	12	839742	839753	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
66	NC_002971	ATAAGG	3	18	839754	839771	50 %	16.67 %	33.33 %	0 %	Non-Coding
67	NC_002971	AGTTTG	2	12	842730	842741	16.67 %	50 %	33.33 %	0 %	Non-Coding
68	NC_002971	ATTAAA	2	12	893125	893136	66.67 %	33.33 %	0 %	0 %	Non-Coding
69	NC_002971	AATCGT	2	12	899040	899051	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
70	NC_002971	TGTCGC	2	12	901797	901808	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
71	NC_002971	AATTTC	2	12	910263	910274	33.33 %	50 %	0 %	16.67 %	Non-Coding
72	NC_002971	GATAAG	2	12	911124	911135	50 %	16.67 %	33.33 %	0 %	Non-Coding
73	NC_002971	ATATTA	2	12	938056	938067	50 %	50 %	0 %	0 %	Non-Coding
74	NC_002971	GAGTAA	2	12	959601	959612	50 %	16.67 %	33.33 %	0 %	Non-Coding
75	NC_002971	TCTATT	2	12	973202	973213	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
76	NC_002971	TCATTC	2	12	973508	973519	16.67 %	50 %	0 %	33.33 %	Non-Coding
77	NC_002971	CTAACG	2	12	978407	978418	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
78	NC_002971	AATTAC	2	12	979017	979028	50 %	33.33 %	0 %	16.67 %	Non-Coding
79	NC_002971	ACCCCC	2	12	985815	985826	16.67 %	0 %	0 %	83.33 %	Non-Coding
80	NC_002971	AAATGA	2	12	986264	986275	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
81	NC_002971	TCAACA	2	12	990127	990138	50 %	16.67 %	0 %	33.33 %	Non-Coding
82	NC_002971	GGTGAG	2	12	991613	991624	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
83	NC_002971	TCACTG	2	12	992553	992564	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
84	NC_002971	ATTTTT	2	12	992730	992741	16.67 %	83.33 %	0 %	0 %	Non-Coding
85	NC_002971	CTGTTG	2	12	1007559	1007570	0 %	50 %	33.33 %	16.67 %	Non-Coding
86	NC_002971	GTTTGA	2	12	1024799	1024810	16.67 %	50 %	33.33 %	0 %	Non-Coding
87	NC_002971	TAAAAA	2	12	1048949	1048960	83.33 %	16.67 %	0 %	0 %	Non-Coding
88	NC_002971	AAAAGA	3	18	1049205	1049222	83.33 %	0 %	16.67 %	0 %	Non-Coding
89	NC_002971	TTATAT	2	12	1053880	1053891	33.33 %	66.67 %	0 %	0 %	Non-Coding
90	NC_002971	CATTTT	2	12	1053923	1053934	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
91	NC_002971	CACAGC	2	12	1054592	1054603	33.33 %	0 %	16.67 %	50 %	Non-Coding
92	NC_002971	ACCATC	2	12	1069328	1069339	33.33 %	16.67 %	0 %	50 %	Non-Coding
93	NC_002971	CAGAGC	2	12	1082046	1082057	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
94	NC_002971	TCCCTC	2	12	1082091	1082102	0 %	33.33 %	0 %	66.67 %	Non-Coding
95	NC_002971	CACCCA	2	12	1087907	1087918	33.33 %	0 %	0 %	66.67 %	Non-Coding
96	NC_002971	CCCGGT	2	12	1098172	1098183	0 %	16.67 %	33.33 %	50 %	Non-Coding
97	NC_002971	ACGCCA	2	12	1114941	1114952	33.33 %	0 %	16.67 %	50 %	Non-Coding
98	NC_002971	TCCTTT	2	12	1116128	1116139	0 %	66.67 %	0 %	33.33 %	Non-Coding
99	NC_002971	GTTATA	2	12	1151211	1151222	33.33 %	50 %	16.67 %	0 %	Non-Coding
100	NC_002971	AGCCGT	2	12	1154314	1154325	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
101	NC_002971	TCCATA	2	12	1154460	1154471	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
102	NC_002971	TTATAA	2	12	1155584	1155595	50 %	50 %	0 %	0 %	Non-Coding
103	NC_002971	AATTTG	2	12	1161362	1161373	33.33 %	50 %	16.67 %	0 %	Non-Coding
104	NC_002971	TGGTTA	2	12	1214054	1214065	16.67 %	50 %	33.33 %	0 %	Non-Coding
105	NC_002971	AGTGAA	2	12	1222597	1222608	50 %	16.67 %	33.33 %	0 %	Non-Coding
106	NC_002971	AAGTGT	2	12	1241217	1241228	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
107	NC_002971	AGCGTA	2	12	1242145	1242156	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
108	NC_002971	TAGAAG	2	12	1253888	1253899	50 %	16.67 %	33.33 %	0 %	Non-Coding
109	NC_002971	TTCAGT	2	12	1277237	1277248	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
110	NC_002971	TGAATA	2	12	1280673	1280684	50 %	33.33 %	16.67 %	0 %	Non-Coding
111	NC_002971	AATTCT	2	12	1287620	1287631	33.33 %	50 %	0 %	16.67 %	Non-Coding
112	NC_002971	ACCCGA	2	12	1339585	1339596	33.33 %	0 %	16.67 %	50 %	Non-Coding
113	NC_002971	AACCAT	2	12	1344450	1344461	50 %	16.67 %	0 %	33.33 %	Non-Coding
114	NC_002971	GGTTAA	2	12	1359597	1359608	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
115	NC_002971	ACGATG	2	12	1370060	1370071	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
116	NC_002971	AGAGTC	2	12	1374873	1374884	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
117	NC_002971	TCATTT	2	12	1375282	1375293	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
118	NC_002971	AAAATC	2	12	1375698	1375709	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
119	NC_002971	TCGTTA	2	12	1376290	1376301	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
120	NC_002971	TTGCAA	2	12	1405396	1405407	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
121	NC_002971	ACGAGA	2	12	1408224	1408235	50 %	0 %	33.33 %	16.67 %	Non-Coding
122	NC_002971	CTTGCC	2	12	1409738	1409749	0 %	33.33 %	16.67 %	50 %	Non-Coding
123	NC_002971	AAAGAA	2	12	1409946	1409957	83.33 %	0 %	16.67 %	0 %	Non-Coding
124	NC_002971	ATTTTT	2	12	1445718	1445729	16.67 %	83.33 %	0 %	0 %	Non-Coding
125	NC_002971	ATTTCA	2	12	1448899	1448910	33.33 %	50 %	0 %	16.67 %	Non-Coding
126	NC_002971	CGTTAA	2	12	1449694	1449705	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
127	NC_002971	TTTGCC	2	12	1466603	1466614	0 %	50 %	16.67 %	33.33 %	Non-Coding
128	NC_002971	GAAAAG	5	30	1471840	1471869	66.67 %	0 %	33.33 %	0 %	Non-Coding
129	NC_002971	AGAAAA	2	12	1472034	1472045	83.33 %	0 %	16.67 %	0 %	Non-Coding
130	NC_002971	GACTTT	2	12	1473192	1473203	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
131	NC_002971	TTTTCT	2	12	1474190	1474201	0 %	83.33 %	0 %	16.67 %	Non-Coding
132	NC_002971	TATTGC	2	12	1475682	1475693	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
133	NC_002971	TGAAGG	2	12	1475982	1475993	33.33 %	16.67 %	50 %	0 %	Non-Coding
134	NC_002971	TGCTTT	2	12	1481917	1481928	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
135	NC_002971	TCGAAA	2	12	1484318	1484329	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
136	NC_002971	CGAAAA	2	12	1505229	1505240	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
137	NC_002971	TTCGGT	2	12	1510127	1510138	0 %	50 %	33.33 %	16.67 %	Non-Coding
138	NC_002971	AAATCC	2	12	1510158	1510169	50 %	16.67 %	0 %	33.33 %	Non-Coding
139	NC_002971	TCTTTA	2	12	1529665	1529676	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
140	NC_002971	GGGGGT	2	12	1546872	1546883	0 %	16.67 %	83.33 %	0 %	Non-Coding
141	NC_002971	ATCCTT	2	12	1554138	1554149	16.67 %	50 %	0 %	33.33 %	Non-Coding
142	NC_002971	GATTAG	2	12	1554152	1554163	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
143	NC_002971	TAAAGG	2	12	1558457	1558468	50 %	16.67 %	33.33 %	0 %	Non-Coding
144	NC_002971	GCAAAA	2	12	1602790	1602801	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
145	NC_002971	TTTCTT	2	12	1612191	1612202	0 %	83.33 %	0 %	16.67 %	Non-Coding
146	NC_002971	AGAAAA	2	12	1622384	1622395	83.33 %	0 %	16.67 %	0 %	Non-Coding
147	NC_002971	ACTAAA	2	12	1659596	1659607	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
148	NC_002971	AAATAA	2	12	1680981	1680992	83.33 %	16.67 %	0 %	0 %	Non-Coding
149	NC_002971	GAGACC	2	12	1687408	1687419	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
150	NC_002971	CCCAAT	2	12	1688600	1688611	33.33 %	16.67 %	0 %	50 %	Non-Coding
151	NC_002971	CCTGTA	2	12	1720807	1720818	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
152	NC_002971	CAGAAA	2	12	1721005	1721016	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
153	NC_002971	AAAATG	2	12	1724410	1724421	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
154	NC_002971	CCTTGT	2	12	1774227	1774238	0 %	50 %	16.67 %	33.33 %	Non-Coding
155	NC_002971	TTGGAT	2	12	1790152	1790163	16.67 %	50 %	33.33 %	0 %	Non-Coding
156	NC_002971	AAAATT	2	12	1793421	1793432	66.67 %	33.33 %	0 %	0 %	Non-Coding
157	NC_002971	AGACAT	2	12	1803280	1803291	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
158	NC_002971	ATTTTT	2	12	1803394	1803405	16.67 %	83.33 %	0 %	0 %	Non-Coding
159	NC_002971	ACCATT	2	12	1803436	1803447	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
160	NC_002971	ACTTTC	2	12	1878715	1878726	16.67 %	50 %	0 %	33.33 %	Non-Coding
161	NC_002971	GGAAAA	2	12	1898196	1898207	66.67 %	0 %	33.33 %	0 %	Non-Coding
162	NC_002971	CAAGAG	2	12	1903880	1903891	50 %	0 %	33.33 %	16.67 %	Non-Coding
163	NC_002971	TCGTTT	2	12	1921969	1921980	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
164	NC_002971	TATAAC	2	12	1930079	1930090	50 %	33.33 %	0 %	16.67 %	Non-Coding
165	NC_002971	GAATCT	2	12	1940882	1940893	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
166	NC_002971	GAAAAA	2	12	1943053	1943064	83.33 %	0 %	16.67 %	0 %	Non-Coding
167	NC_002971	ACGGTT	2	12	1949913	1949924	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
168	NC_002971	CGAGCT	2	12	1956436	1956447	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
169	NC_002971	TTGTTC	2	12	1967297	1967308	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
170	NC_002971	ATACAA	2	12	1970215	1970226	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
171	NC_002971	AGAAAC	2	12	1980583	1980594	66.67 %	0 %	16.67 %	16.67 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.