MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia muridarum Nigg

Total Repeats: 42

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_002620	TTTTCT	2	12	84254	84265	0 %	83.33 %	0 %	16.67 %	Non-Coding
2	NC_002620	ATTTTT	2	12	88025	88036	16.67 %	83.33 %	0 %	0 %	Non-Coding
3	NC_002620	ATTTTT	2	12	101069	101080	16.67 %	83.33 %	0 %	0 %	Non-Coding
4	NC_002620	TTTTTA	2	12	114478	114489	16.67 %	83.33 %	0 %	0 %	Non-Coding
5	NC_002620	TAAGGA	2	12	135381	135392	50 %	16.67 %	33.33 %	0 %	Non-Coding
6	NC_002620	AAGCGA	2	12	136307	136318	50 %	0 %	33.33 %	16.67 %	Non-Coding
7	NC_002620	TAAGGA	2	12	157339	157350	50 %	16.67 %	33.33 %	0 %	Non-Coding
8	NC_002620	AAGCGA	2	12	158265	158276	50 %	0 %	33.33 %	16.67 %	Non-Coding
9	NC_002620	ACTAAG	2	12	188465	188476	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
10	NC_002620	TCTAAA	2	12	216321	216332	50 %	33.33 %	0 %	16.67 %	Non-Coding
11	NC_002620	ATGGTT	2	12	253056	253067	16.67 %	50 %	33.33 %	0 %	Non-Coding
12	NC_002620	GTGTTT	2	12	297153	297164	0 %	66.67 %	33.33 %	0 %	Non-Coding
13	NC_002620	TAAAAA	2	12	305268	305279	83.33 %	16.67 %	0 %	0 %	Non-Coding
14	NC_002620	TAAAAT	2	12	321572	321583	66.67 %	33.33 %	0 %	0 %	Non-Coding
15	NC_002620	AAAAGA	2	12	329390	329401	83.33 %	0 %	16.67 %	0 %	Non-Coding
16	NC_002620	TAAGCT	2	12	370686	370697	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
17	NC_002620	AAAAAT	2	12	381940	381951	83.33 %	16.67 %	0 %	0 %	Non-Coding
18	NC_002620	TAAAAA	2	12	414665	414676	83.33 %	16.67 %	0 %	0 %	Non-Coding
19	NC_002620	AAAATA	2	12	421026	421037	83.33 %	16.67 %	0 %	0 %	Non-Coding
20	NC_002620	CATAAC	2	12	430389	430400	50 %	16.67 %	0 %	33.33 %	Non-Coding
21	NC_002620	AGCTTT	2	12	449236	449247	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
22	NC_002620	AAAATA	2	12	472717	472728	83.33 %	16.67 %	0 %	0 %	Non-Coding
23	NC_002620	TAAAAA	2	12	479526	479537	83.33 %	16.67 %	0 %	0 %	Non-Coding
24	NC_002620	TGTGAA	2	12	536603	536614	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
25	NC_002620	TTTGAT	2	12	543824	543835	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
26	NC_002620	AAAGCT	2	12	575572	575583	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
27	NC_002620	GTCAAC	2	12	575777	575788	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
28	NC_002620	TTTTAA	2	12	763009	763020	33.33 %	66.67 %	0 %	0 %	Non-Coding
29	NC_002620	GAAAAA	2	12	790071	790082	83.33 %	0 %	16.67 %	0 %	Non-Coding
30	NC_002620	TTAATT	2	12	801707	801718	33.33 %	66.67 %	0 %	0 %	Non-Coding
31	NC_002620	AGAATA	2	12	861156	861167	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
32	NC_002620	CTCCAG	2	12	888295	888306	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
33	NC_002620	TTTCTT	2	12	888952	888963	0 %	83.33 %	0 %	16.67 %	Non-Coding
34	NC_002620	TGCTCA	2	12	900852	900863	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
35	NC_002620	AAAAAG	2	12	910219	910230	83.33 %	0 %	16.67 %	0 %	Non-Coding
36	NC_002620	TAGGGG	2	12	957690	957701	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
37	NC_002620	AGAGAA	2	12	969548	969559	66.67 %	0 %	33.33 %	0 %	Non-Coding
38	NC_002620	TCTTTT	2	12	970565	970576	0 %	83.33 %	0 %	16.67 %	Non-Coding
39	NC_002620	GTTATC	2	12	970592	970603	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
40	NC_002620	CAAAAA	2	12	1029805	1029816	83.33 %	0 %	0 %	16.67 %	Non-Coding
41	NC_002620	AGAAAA	2	12	1035418	1035429	83.33 %	0 %	16.67 %	0 %	Non-Coding
42	NC_002620	AAGCTT	2	12	1043479	1043490	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.