MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Yersinia pestis Pestoides F chromosome

Total Repeats: 17625

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S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
17501	NC_009381	TTTC	2	8	4494256	4494263	0 %	75 %	0 %	25 %	Non-Coding
17502	NC_009381	AGT	2	6	4494293	4494298	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
17503	NC_009381	A	7	7	4494330	4494336	100 %	0 %	0 %	0 %	Non-Coding
17504	NC_009381	A	6	6	4494341	4494346	100 %	0 %	0 %	0 %	Non-Coding
17505	NC_009381	T	6	6	4494366	4494371	0 %	100 %	0 %	0 %	Non-Coding
17506	NC_009381	T	6	6	4494377	4494382	0 %	100 %	0 %	0 %	Non-Coding
17507	NC_009381	GTA	2	6	4494450	4494455	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
17508	NC_009381	ATT	2	6	4494456	4494461	33.33 %	66.67 %	0 %	0 %	Non-Coding
17509	NC_009381	TTA	2	6	4495886	4495891	33.33 %	66.67 %	0 %	0 %	Non-Coding
17510	NC_009381	CTT	2	6	4495917	4495922	0 %	66.67 %	0 %	33.33 %	Non-Coding
17511	NC_009381	ATA	2	6	4495976	4495981	66.67 %	33.33 %	0 %	0 %	Non-Coding
17512	NC_009381	ATCA	2	8	4496022	4496029	50 %	25 %	0 %	25 %	Non-Coding
17513	NC_009381	TAA	2	6	4496053	4496058	66.67 %	33.33 %	0 %	0 %	Non-Coding
17514	NC_009381	T	6	6	4497979	4497984	0 %	100 %	0 %	0 %	Non-Coding
17515	NC_009381	AAT	2	6	4497998	4498003	66.67 %	33.33 %	0 %	0 %	Non-Coding
17516	NC_009381	TTA	2	6	4498007	4498012	33.33 %	66.67 %	0 %	0 %	Non-Coding
17517	NC_009381	T	7	7	4498034	4498040	0 %	100 %	0 %	0 %	Non-Coding
17518	NC_009381	T	6	6	4498068	4498073	0 %	100 %	0 %	0 %	Non-Coding
17519	NC_009381	A	6	6	4498088	4498093	100 %	0 %	0 %	0 %	Non-Coding
17520	NC_009381	TAA	2	6	4498102	4498107	66.67 %	33.33 %	0 %	0 %	Non-Coding
17521	NC_009381	ATA	2	6	4498120	4498125	66.67 %	33.33 %	0 %	0 %	Non-Coding
17522	NC_009381	TAA	2	6	4498166	4498171	66.67 %	33.33 %	0 %	0 %	Non-Coding
17523	NC_009381	CCT	2	6	4498209	4498214	0 %	33.33 %	0 %	66.67 %	Non-Coding
17524	NC_009381	TGA	2	6	4498230	4498235	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
17525	NC_009381	GTT	2	6	4498271	4498276	0 %	66.67 %	33.33 %	0 %	Non-Coding
17526	NC_009381	C	6	6	4498286	4498291	0 %	0 %	0 %	100 %	Non-Coding
17527	NC_009381	ATTC	2	8	4498321	4498328	25 %	50 %	0 %	25 %	Non-Coding
17528	NC_009381	AGG	2	6	4498386	4498391	33.33 %	0 %	66.67 %	0 %	Non-Coding
17529	NC_009381	CAA	2	6	4499445	4499450	66.67 %	0 %	0 %	33.33 %	Non-Coding
17530	NC_009381	ATA	2	6	4499476	4499481	66.67 %	33.33 %	0 %	0 %	Non-Coding
17531	NC_009381	GCA	2	6	4499508	4499513	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
17532	NC_009381	GT	3	6	4499593	4499598	0 %	50 %	50 %	0 %	Non-Coding
17533	NC_009381	GCG	2	6	4499618	4499623	0 %	0 %	66.67 %	33.33 %	Non-Coding
17534	NC_009381	A	6	6	4501520	4501525	100 %	0 %	0 %	0 %	Non-Coding
17535	NC_009381	CGG	2	6	4501560	4501565	0 %	0 %	66.67 %	33.33 %	Non-Coding
17536	NC_009381	AG	3	6	4501577	4501582	50 %	0 %	50 %	0 %	Non-Coding
17537	NC_009381	TTA	2	6	4502373	4502378	33.33 %	66.67 %	0 %	0 %	Non-Coding
17538	NC_009381	CATT	2	8	4502404	4502411	25 %	50 %	0 %	25 %	Non-Coding
17539	NC_009381	TACG	2	8	4502438	4502445	25 %	25 %	25 %	25 %	Non-Coding
17540	NC_009381	T	7	7	4503212	4503218	0 %	100 %	0 %	0 %	Non-Coding
17541	NC_009381	TTA	2	6	4503231	4503236	33.33 %	66.67 %	0 %	0 %	Non-Coding
17542	NC_009381	ATTA	2	8	4503257	4503264	50 %	50 %	0 %	0 %	Non-Coding
17543	NC_009381	TA	3	6	4503266	4503271	50 %	50 %	0 %	0 %	Non-Coding
17544	NC_009381	CT	3	6	4503276	4503281	0 %	50 %	0 %	50 %	Non-Coding
17545	NC_009381	T	6	6	4503327	4503332	0 %	100 %	0 %	0 %	Non-Coding
17546	NC_009381	TTAT	2	8	4503340	4503347	25 %	75 %	0 %	0 %	Non-Coding
17547	NC_009381	TTA	2	6	4503350	4503355	33.33 %	66.67 %	0 %	0 %	Non-Coding
17548	NC_009381	T	6	6	4503402	4503407	0 %	100 %	0 %	0 %	Non-Coding
17549	NC_009381	TTAT	2	8	4503418	4503425	25 %	75 %	0 %	0 %	Non-Coding
17550	NC_009381	AAT	2	6	4503430	4503435	66.67 %	33.33 %	0 %	0 %	Non-Coding
17551	NC_009381	T	6	6	4503444	4503449	0 %	100 %	0 %	0 %	Non-Coding
17552	NC_009381	AT	3	6	4504160	4504165	50 %	50 %	0 %	0 %	Non-Coding
17553	NC_009381	TAT	2	6	4504290	4504295	33.33 %	66.67 %	0 %	0 %	Non-Coding
17554	NC_009381	ATCTC	2	10	4504339	4504348	20 %	40 %	0 %	40 %	Non-Coding
17555	NC_009381	GATATA	2	12	4505382	4505393	50 %	33.33 %	16.67 %	0 %	Non-Coding
17556	NC_009381	AGGC	2	8	4506904	4506911	25 %	0 %	50 %	25 %	Non-Coding
17557	NC_009381	A	6	6	4507613	4507618	100 %	0 %	0 %	0 %	Non-Coding
17558	NC_009381	TAA	2	6	4507652	4507657	66.67 %	33.33 %	0 %	0 %	Non-Coding
17559	NC_009381	TTA	2	6	4507670	4507675	33.33 %	66.67 %	0 %	0 %	Non-Coding
17560	NC_009381	TAA	2	6	4507685	4507690	66.67 %	33.33 %	0 %	0 %	Non-Coding
17561	NC_009381	GA	3	6	4507730	4507735	50 %	0 %	50 %	0 %	Non-Coding
17562	NC_009381	CTC	2	6	4507811	4507816	0 %	33.33 %	0 %	66.67 %	Non-Coding
17563	NC_009381	CAG	2	6	4507858	4507863	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
17564	NC_009381	TCT	3	9	4507871	4507879	0 %	66.67 %	0 %	33.33 %	Non-Coding
17565	NC_009381	TGA	2	6	4507898	4507903	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
17566	NC_009381	ATA	2	6	4507989	4507994	66.67 %	33.33 %	0 %	0 %	Non-Coding
17567	NC_009381	A	6	6	4507994	4507999	100 %	0 %	0 %	0 %	Non-Coding
17568	NC_009381	A	6	6	4508005	4508010	100 %	0 %	0 %	0 %	Non-Coding
17569	NC_009381	A	6	6	4509451	4509456	100 %	0 %	0 %	0 %	Non-Coding
17570	NC_009381	TAA	2	6	4509495	4509500	66.67 %	33.33 %	0 %	0 %	Non-Coding
17571	NC_009381	ATA	2	6	4509516	4509521	66.67 %	33.33 %	0 %	0 %	Non-Coding
17572	NC_009381	TTG	2	6	4509556	4509561	0 %	66.67 %	33.33 %	0 %	Non-Coding
17573	NC_009381	AGAT	2	8	4509563	4509570	50 %	25 %	25 %	0 %	Non-Coding
17574	NC_009381	TTTA	2	8	4509630	4509637	25 %	75 %	0 %	0 %	Non-Coding
17575	NC_009381	GTG	2	6	4509670	4509675	0 %	33.33 %	66.67 %	0 %	Non-Coding
17576	NC_009381	ATA	2	6	4509720	4509725	66.67 %	33.33 %	0 %	0 %	Non-Coding
17577	NC_009381	ATGCT	2	10	4509730	4509739	20 %	40 %	20 %	20 %	Non-Coding
17578	NC_009381	ATA	2	6	4509766	4509771	66.67 %	33.33 %	0 %	0 %	Non-Coding
17579	NC_009381	ATC	2	6	4509803	4509808	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
17580	NC_009381	TTAT	2	8	4509863	4509870	25 %	75 %	0 %	0 %	Non-Coding
17581	NC_009381	T	6	6	4509883	4509888	0 %	100 %	0 %	0 %	Non-Coding
17582	NC_009381	TA	3	6	4509908	4509913	50 %	50 %	0 %	0 %	Non-Coding
17583	NC_009381	A	6	6	4509942	4509947	100 %	0 %	0 %	0 %	Non-Coding
17584	NC_009381	CTG	2	6	4510707	4510712	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
17585	NC_009381	G	6	6	4510723	4510728	0 %	0 %	100 %	0 %	Non-Coding
17586	NC_009381	T	6	6	4510792	4510797	0 %	100 %	0 %	0 %	Non-Coding
17587	NC_009381	ATT	2	6	4510834	4510839	33.33 %	66.67 %	0 %	0 %	Non-Coding
17588	NC_009381	A	7	7	4510840	4510846	100 %	0 %	0 %	0 %	Non-Coding
17589	NC_009381	AT	3	6	4510888	4510893	50 %	50 %	0 %	0 %	Non-Coding
17590	NC_009381	G	6	6	4510906	4510911	0 %	0 %	100 %	0 %	Non-Coding
17591	NC_009381	AAT	2	6	4510913	4510918	66.67 %	33.33 %	0 %	0 %	Non-Coding
17592	NC_009381	AATA	2	8	4510923	4510930	75 %	25 %	0 %	0 %	Non-Coding
17593	NC_009381	AT	3	6	4510936	4510941	50 %	50 %	0 %	0 %	Non-Coding
17594	NC_009381	AAT	2	6	4510949	4510954	66.67 %	33.33 %	0 %	0 %	Non-Coding
17595	NC_009381	TTG	2	6	4510956	4510961	0 %	66.67 %	33.33 %	0 %	Non-Coding
17596	NC_009381	TAA	3	9	4510963	4510971	66.67 %	33.33 %	0 %	0 %	Non-Coding
17597	NC_009381	ATTA	2	8	4511001	4511008	50 %	50 %	0 %	0 %	Non-Coding
17598	NC_009381	AT	3	6	4511009	4511014	50 %	50 %	0 %	0 %	Non-Coding
17599	NC_009381	ACT	2	6	4511075	4511080	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
17600	NC_009381	TTA	2	6	4511091	4511096	33.33 %	66.67 %	0 %	0 %	Non-Coding
17601	NC_009381	TGTT	2	8	4511157	4511164	0 %	75 %	25 %	0 %	Non-Coding
17602	NC_009381	AAT	2	6	4511165	4511170	66.67 %	33.33 %	0 %	0 %	Non-Coding
17603	NC_009381	TTGC	2	8	4511245	4511252	0 %	50 %	25 %	25 %	Non-Coding
17604	NC_009381	AAT	2	6	4511277	4511282	66.67 %	33.33 %	0 %	0 %	Non-Coding
17605	NC_009381	AAG	2	6	4511332	4511337	66.67 %	0 %	33.33 %	0 %	Non-Coding
17606	NC_009381	CTG	2	6	4511347	4511352	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
17607	NC_009381	GCA	2	6	4511365	4511370	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
17608	NC_009381	ATT	2	6	4512677	4512682	33.33 %	66.67 %	0 %	0 %	Non-Coding
17609	NC_009381	TC	3	6	4514152	4514157	0 %	50 %	0 %	50 %	Non-Coding
17610	NC_009381	ATT	2	6	4514165	4514170	33.33 %	66.67 %	0 %	0 %	Non-Coding
17611	NC_009381	TAT	2	6	4514186	4514191	33.33 %	66.67 %	0 %	0 %	Non-Coding
17612	NC_009381	AAT	2	6	4516692	4516697	66.67 %	33.33 %	0 %	0 %	Non-Coding
17613	NC_009381	GCT	2	6	4516721	4516726	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
17614	NC_009381	AAG	2	6	4516765	4516770	66.67 %	0 %	33.33 %	0 %	Non-Coding
17615	NC_009381	TAA	2	6	4516779	4516784	66.67 %	33.33 %	0 %	0 %	Non-Coding
17616	NC_009381	GCCT	2	8	4516856	4516863	0 %	25 %	25 %	50 %	Non-Coding
17617	NC_009381	CTG	2	6	4516875	4516880	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
17618	NC_009381	GCTATT	2	12	4516892	4516903	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
17619	NC_009381	AGGGGA	2	12	4517013	4517024	33.33 %	0 %	66.67 %	0 %	Non-Coding
17620	NC_009381	AGGA	2	8	4517142	4517149	50 %	0 %	50 %	0 %	Non-Coding
17621	NC_009381	A	6	6	4517233	4517238	100 %	0 %	0 %	0 %	Non-Coding
17622	NC_009381	CAG	2	6	4517240	4517245	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
17623	NC_009381	A	6	6	4517247	4517252	100 %	0 %	0 %	0 %	Non-Coding
17624	NC_009381	A	6	6	4517260	4517265	100 %	0 %	0 %	0 %	Non-Coding
17625	NC_009381	GT	3	6	4517306	4517311	0 %	50 %	50 %	0 %	Non-Coding

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©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.