MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Treponema pallidum subsp. pertenue str. SamoaD chromosome

Total Repeats: 27

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_016842	CCTCCC	2	12	49437	49448	0 %	16.67 %	0 %	83.33 %	Non-Coding
2	NC_016842	GCACGA	2	12	59447	59458	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
3	NC_016842	TCTCAA	2	12	124817	124828	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
4	NC_016842	GGCTGG	2	12	150292	150303	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
5	NC_016842	TCGGGC	2	12	150307	150318	0 %	16.67 %	50 %	33.33 %	Non-Coding
6	NC_016842	CTGCGG	4	24	151484	151507	0 %	16.67 %	50 %	33.33 %	Non-Coding
7	NC_016842	CGGCTC	2	12	151989	152000	0 %	16.67 %	33.33 %	50 %	Non-Coding
8	NC_016842	GTGCGA	2	12	234291	234302	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
9	NC_016842	TCCTTC	2	12	235672	235683	0 %	50 %	0 %	50 %	Non-Coding
10	NC_016842	GTGCGA	2	12	282703	282714	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
11	NC_016842	TCCTTC	2	12	284084	284095	0 %	50 %	0 %	50 %	Non-Coding
12	NC_016842	AATATA	2	12	355324	355335	66.67 %	33.33 %	0 %	0 %	Non-Coding
13	NC_016842	TTTCCG	2	12	372587	372598	0 %	50 %	16.67 %	33.33 %	Non-Coding
14	NC_016842	CGTGCG	3	18	525323	525340	0 %	16.67 %	50 %	33.33 %	Non-Coding
15	NC_016842	TAACCC	2	12	562236	562247	33.33 %	16.67 %	0 %	50 %	Non-Coding
16	NC_016842	ATACTG	2	12	562330	562341	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
17	NC_016842	TTCTCC	2	12	699181	699192	0 %	50 %	0 %	50 %	Non-Coding
18	NC_016842	ACGCGC	2	12	766679	766690	16.67 %	0 %	33.33 %	50 %	Non-Coding
19	NC_016842	ACGCAG	2	12	810585	810596	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
20	NC_016842	ACACGC	2	12	819420	819431	33.33 %	0 %	16.67 %	50 %	Non-Coding
21	NC_016842	GCAGGG	2	12	827872	827883	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
22	NC_016842	CAGAGA	2	12	853617	853628	50 %	0 %	33.33 %	16.67 %	Non-Coding
23	NC_016842	GTGCAC	2	12	869898	869909	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
24	NC_016842	AAAGAC	2	12	882457	882468	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
25	NC_016842	CCATCC	2	12	890406	890417	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
26	NC_016842	GGCGCA	2	12	907702	907713	16.67 %	0 %	50 %	33.33 %	Non-Coding
27	NC_016842	GAGCAG	2	12	995604	995615	33.33 %	0 %	50 %	16.67 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.