MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Shigella sonnei Ss046 plasmid pSS046_spA

Total Repeats: 73

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_009345	GCA	2	6	60	65	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
2	NC_009345	ATCT	2	8	173	180	25 %	50 %	0 %	25 %	Non-Coding
3	NC_009345	GCC	2	6	209	214	0 %	0 %	33.33 %	66.67 %	Non-Coding
4	NC_009345	GC	3	6	252	257	0 %	0 %	50 %	50 %	Non-Coding
5	NC_009345	CGC	2	6	285	290	0 %	0 %	33.33 %	66.67 %	Non-Coding
6	NC_009345	GCC	2	6	308	313	0 %	0 %	33.33 %	66.67 %	Non-Coding
7	NC_009345	AG	3	6	314	319	50 %	0 %	50 %	0 %	Non-Coding
8	NC_009345	AGGGC	2	10	349	358	20 %	0 %	60 %	20 %	Non-Coding
9	NC_009345	GCT	2	6	378	383	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
10	NC_009345	TGT	2	6	418	423	0 %	66.67 %	33.33 %	0 %	Non-Coding
11	NC_009345	CTG	2	6	434	439	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
12	NC_009345	AGTG	2	8	441	448	25 %	25 %	50 %	0 %	Non-Coding
13	NC_009345	ATCCCG	2	12	2543	2554	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
14	NC_009345	GCC	2	6	2568	2573	0 %	0 %	33.33 %	66.67 %	Non-Coding
15	NC_009345	TACA	2	8	2611	2618	50 %	25 %	0 %	25 %	Non-Coding
16	NC_009345	TGCC	2	8	2660	2667	0 %	25 %	25 %	50 %	Non-Coding
17	NC_009345	GCCA	2	8	2681	2688	25 %	0 %	25 %	50 %	Non-Coding
18	NC_009345	ATG	2	6	2754	2759	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
19	NC_009345	TTA	2	6	2767	2772	33.33 %	66.67 %	0 %	0 %	Non-Coding
20	NC_009345	CAG	2	6	2777	2782	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
21	NC_009345	TTC	2	6	2803	2808	0 %	66.67 %	0 %	33.33 %	Non-Coding
22	NC_009345	TGA	2	6	2840	2845	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
23	NC_009345	ACT	2	6	2874	2879	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
24	NC_009345	CCA	2	6	2890	2895	33.33 %	0 %	0 %	66.67 %	Non-Coding
25	NC_009345	ACC	3	9	2898	2906	33.33 %	0 %	0 %	66.67 %	Non-Coding
26	NC_009345	CAT	2	6	2945	2950	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
27	NC_009345	ACC	2	6	2982	2987	33.33 %	0 %	0 %	66.67 %	Non-Coding
28	NC_009345	TA	3	6	3075	3080	50 %	50 %	0 %	0 %	Non-Coding
29	NC_009345	TAC	2	6	3093	3098	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
30	NC_009345	T	6	6	3126	3131	0 %	100 %	0 %	0 %	Non-Coding
31	NC_009345	CTG	2	6	3192	3197	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
32	NC_009345	AC	3	6	3210	3215	50 %	0 %	0 %	50 %	Non-Coding
33	NC_009345	ATGGC	2	10	3235	3244	20 %	20 %	40 %	20 %	Non-Coding
34	NC_009345	A	6	6	3336	3341	100 %	0 %	0 %	0 %	Non-Coding
35	NC_009345	AGG	2	6	3422	3427	33.33 %	0 %	66.67 %	0 %	Non-Coding
36	NC_009345	CAG	2	6	3481	3486	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
37	NC_009345	GCA	2	6	3501	3506	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
38	NC_009345	GAG	2	6	3568	3573	33.33 %	0 %	66.67 %	0 %	Non-Coding
39	NC_009345	AAC	2	6	3578	3583	66.67 %	0 %	0 %	33.33 %	Non-Coding
40	NC_009345	A	7	7	3626	3632	100 %	0 %	0 %	0 %	Non-Coding
41	NC_009345	CAA	2	6	3769	3774	66.67 %	0 %	0 %	33.33 %	Non-Coding
42	NC_009345	ACC	2	6	3775	3780	33.33 %	0 %	0 %	66.67 %	Non-Coding
43	NC_009345	GCAT	2	8	3819	3826	25 %	25 %	25 %	25 %	Non-Coding
44	NC_009345	TTC	2	6	3895	3900	0 %	66.67 %	0 %	33.33 %	Non-Coding
45	NC_009345	ATG	2	6	4048	4053	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
46	NC_009345	GAA	2	6	4144	4149	66.67 %	0 %	33.33 %	0 %	Non-Coding
47	NC_009345	T	7	7	4191	4197	0 %	100 %	0 %	0 %	Non-Coding
48	NC_009345	ATT	2	6	4242	4247	33.33 %	66.67 %	0 %	0 %	Non-Coding
49	NC_009345	A	8	8	4316	4323	100 %	0 %	0 %	0 %	Non-Coding
50	NC_009345	GTT	2	6	4567	4572	0 %	66.67 %	33.33 %	0 %	Non-Coding
51	NC_009345	CAT	2	6	4573	4578	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
52	NC_009345	GTT	2	6	4616	4621	0 %	66.67 %	33.33 %	0 %	Non-Coding
53	NC_009345	A	6	6	4735	4740	100 %	0 %	0 %	0 %	Non-Coding
54	NC_009345	GCA	2	6	4742	4747	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
55	NC_009345	CAG	2	6	4757	4762	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
56	NC_009345	GCG	2	6	4828	4833	0 %	0 %	66.67 %	33.33 %	Non-Coding
57	NC_009345	ACGG	2	8	4848	4855	25 %	0 %	50 %	25 %	Non-Coding
58	NC_009345	AGA	2	6	4898	4903	66.67 %	0 %	33.33 %	0 %	Non-Coding
59	NC_009345	C	6	6	4942	4947	0 %	0 %	0 %	100 %	Non-Coding
60	NC_009345	GTG	2	6	4981	4986	0 %	33.33 %	66.67 %	0 %	Non-Coding
61	NC_009345	C	6	6	5171	5176	0 %	0 %	0 %	100 %	Non-Coding
62	NC_009345	GCA	2	6	5255	5260	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
63	NC_009345	AGAT	2	8	5287	5294	50 %	25 %	25 %	0 %	Non-Coding
64	NC_009345	T	6	6	5434	5439	0 %	100 %	0 %	0 %	Non-Coding
65	NC_009345	AAG	2	6	5482	5487	66.67 %	0 %	33.33 %	0 %	Non-Coding
66	NC_009345	GCA	2	6	5591	5596	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
67	NC_009345	A	6	6	5607	5612	100 %	0 %	0 %	0 %	Non-Coding
68	NC_009345	AT	3	6	5618	5623	50 %	50 %	0 %	0 %	Non-Coding
69	NC_009345	GA	3	6	5633	5638	50 %	0 %	50 %	0 %	Non-Coding
70	NC_009345	AT	3	6	5641	5646	50 %	50 %	0 %	0 %	Non-Coding
71	NC_009345	CAT	3	9	5670	5678	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
72	NC_009345	ATT	4	12	5756	5767	33.33 %	66.67 %	0 %	0 %	Non-Coding
73	NC_009345	TCA	2	6	6630	6635	33.33 %	33.33 %	0 %	33.33 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.