MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Streptococcus pneumoniae R6 chromosome

Total Repeats: 115

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_003098	TAAGGA	2	12	16698	16709	50 %	16.67 %	33.33 %	0 %	Non-Coding
2	NC_003098	GAAGTG	2	12	19786	19797	33.33 %	16.67 %	50 %	0 %	Non-Coding
3	NC_003098	ACTAAT	2	12	19816	19827	50 %	33.33 %	0 %	16.67 %	Non-Coding
4	NC_003098	AGTTGA	2	12	21714	21725	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
5	NC_003098	TAAAAA	2	12	39489	39500	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_003098	TTCTAT	2	12	64660	64671	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
7	NC_003098	TAAAAT	2	12	72890	72901	66.67 %	33.33 %	0 %	0 %	Non-Coding
8	NC_003098	GCTTAT	2	12	104923	104934	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
9	NC_003098	TTTGCT	2	12	136842	136853	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
10	NC_003098	ATAAAA	2	12	137233	137244	83.33 %	16.67 %	0 %	0 %	Non-Coding
11	NC_003098	TATCTC	2	12	140224	140235	16.67 %	50 %	0 %	33.33 %	Non-Coding
12	NC_003098	TAAAAA	2	12	185496	185507	83.33 %	16.67 %	0 %	0 %	Non-Coding
13	NC_003098	TTTTAC	2	12	187621	187632	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
14	NC_003098	ACAAGA	2	12	193518	193529	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
15	NC_003098	CATAAT	2	12	216071	216082	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_003098	TCTTAA	2	12	231737	231748	33.33 %	50 %	0 %	16.67 %	Non-Coding
17	NC_003098	GGTTGC	2	12	248518	248529	0 %	33.33 %	50 %	16.67 %	Non-Coding
18	NC_003098	TTTTTA	2	12	263280	263291	16.67 %	83.33 %	0 %	0 %	Non-Coding
19	NC_003098	TCTTTT	2	12	267958	267969	0 %	83.33 %	0 %	16.67 %	Non-Coding
20	NC_003098	AGGAGT	2	12	300240	300251	33.33 %	16.67 %	50 %	0 %	Non-Coding
21	NC_003098	GAAAAA	2	12	305933	305944	83.33 %	0 %	16.67 %	0 %	Non-Coding
22	NC_003098	ACAAGA	2	12	312608	312619	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
23	NC_003098	TCTATC	2	12	313253	313264	16.67 %	50 %	0 %	33.33 %	Non-Coding
24	NC_003098	GCAGTT	2	12	341863	341874	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
25	NC_003098	TGAAAA	2	12	433390	433401	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
26	NC_003098	GCTTGC	2	12	433412	433423	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
27	NC_003098	CTTGAA	2	12	474219	474230	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
28	NC_003098	AGGATA	2	12	474413	474424	50 %	16.67 %	33.33 %	0 %	Non-Coding
29	NC_003098	TGCTTT	2	12	479533	479544	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
30	NC_003098	GAAAGA	2	12	499831	499842	66.67 %	0 %	33.33 %	0 %	Non-Coding
31	NC_003098	CTGTAA	2	12	557340	557351	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
32	NC_003098	AAAGTT	2	12	562365	562376	50 %	33.33 %	16.67 %	0 %	Non-Coding
33	NC_003098	ACTTCT	2	12	578995	579006	16.67 %	50 %	0 %	33.33 %	Non-Coding
34	NC_003098	CTTGCT	2	12	619364	619375	0 %	50 %	16.67 %	33.33 %	Non-Coding
35	NC_003098	TAAGAT	2	12	619581	619592	50 %	33.33 %	16.67 %	0 %	Non-Coding
36	NC_003098	AGTATT	2	12	620861	620872	33.33 %	50 %	16.67 %	0 %	Non-Coding
37	NC_003098	AGGAGC	2	12	620873	620884	33.33 %	0 %	50 %	16.67 %	Non-Coding
38	NC_003098	TCTAAG	2	12	620903	620914	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
39	NC_003098	AACATA	2	12	687446	687457	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
40	NC_003098	CAAAAG	2	12	687641	687652	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
41	NC_003098	TCTTGT	2	12	723719	723730	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
42	NC_003098	TAAAAA	2	12	736149	736160	83.33 %	16.67 %	0 %	0 %	Non-Coding
43	NC_003098	TTCGGG	2	12	759461	759472	0 %	33.33 %	50 %	16.67 %	Non-Coding
44	NC_003098	TTAAAA	2	12	792333	792344	66.67 %	33.33 %	0 %	0 %	Non-Coding
45	NC_003098	TATAAA	2	12	795857	795868	66.67 %	33.33 %	0 %	0 %	Non-Coding
46	NC_003098	GCAATC	2	12	802058	802069	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
47	NC_003098	AAAAAG	2	12	847720	847731	83.33 %	0 %	16.67 %	0 %	Non-Coding
48	NC_003098	ACCAAG	2	12	848583	848594	50 %	0 %	16.67 %	33.33 %	Non-Coding
49	NC_003098	ACAAAC	2	12	855099	855110	66.67 %	0 %	0 %	33.33 %	Non-Coding
50	NC_003098	TTTTTA	2	12	867865	867876	16.67 %	83.33 %	0 %	0 %	Non-Coding
51	NC_003098	CTATTT	2	12	879341	879352	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
52	NC_003098	AAAAAG	2	12	879390	879401	83.33 %	0 %	16.67 %	0 %	Non-Coding
53	NC_003098	GATAGA	2	12	886757	886768	50 %	16.67 %	33.33 %	0 %	Non-Coding
54	NC_003098	TTTTCT	2	12	889677	889688	0 %	83.33 %	0 %	16.67 %	Non-Coding
55	NC_003098	ATCACT	2	12	899372	899383	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
56	NC_003098	TAAAAA	2	12	920120	920131	83.33 %	16.67 %	0 %	0 %	Non-Coding
57	NC_003098	TGTCAA	2	12	925737	925748	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
58	NC_003098	AATGGA	2	12	937676	937687	50 %	16.67 %	33.33 %	0 %	Non-Coding
59	NC_003098	CAAAAG	2	12	939710	939721	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
60	NC_003098	AATTTT	2	12	1053223	1053234	33.33 %	66.67 %	0 %	0 %	Non-Coding
61	NC_003098	ACCAAT	2	12	1053796	1053807	50 %	16.67 %	0 %	33.33 %	Non-Coding
62	NC_003098	TTTTTG	2	12	1065691	1065702	0 %	83.33 %	16.67 %	0 %	Non-Coding
63	NC_003098	GTTTGT	2	12	1074780	1074791	0 %	66.67 %	33.33 %	0 %	Non-Coding
64	NC_003098	TGAAAA	2	12	1093640	1093651	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
65	NC_003098	AGAAAA	2	12	1136161	1136172	83.33 %	0 %	16.67 %	0 %	Non-Coding
66	NC_003098	TAAAAA	2	12	1175526	1175537	83.33 %	16.67 %	0 %	0 %	Non-Coding
67	NC_003098	AATCTA	2	12	1205765	1205776	50 %	33.33 %	0 %	16.67 %	Non-Coding
68	NC_003098	TAGGTA	2	12	1223639	1223650	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
69	NC_003098	TTGAAA	2	12	1234615	1234626	50 %	33.33 %	16.67 %	0 %	Non-Coding
70	NC_003098	GATGGT	2	12	1263372	1263383	16.67 %	33.33 %	50 %	0 %	Non-Coding
71	NC_003098	TTTTAT	2	12	1274659	1274670	16.67 %	83.33 %	0 %	0 %	Non-Coding
72	NC_003098	TTTCCT	2	12	1278150	1278161	0 %	66.67 %	0 %	33.33 %	Non-Coding
73	NC_003098	GAGGAA	2	12	1281499	1281510	50 %	0 %	50 %	0 %	Non-Coding
74	NC_003098	ATGAAA	2	12	1310985	1310996	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
75	NC_003098	ATACAA	2	12	1318238	1318249	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
76	NC_003098	ACTAAA	2	12	1333583	1333594	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
77	NC_003098	AAATTT	2	12	1348344	1348355	50 %	50 %	0 %	0 %	Non-Coding
78	NC_003098	CCGTTT	2	12	1451046	1451057	0 %	50 %	16.67 %	33.33 %	Non-Coding
79	NC_003098	GATTGC	2	12	1459510	1459521	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
80	NC_003098	TTAAAA	2	12	1506969	1506980	66.67 %	33.33 %	0 %	0 %	Non-Coding
81	NC_003098	AACTTG	2	12	1544087	1544098	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
82	NC_003098	ATTTGA	2	12	1567134	1567145	33.33 %	50 %	16.67 %	0 %	Non-Coding
83	NC_003098	TAATCA	2	12	1575093	1575104	50 %	33.33 %	0 %	16.67 %	Non-Coding
84	NC_003098	CACTTC	2	12	1588779	1588790	16.67 %	33.33 %	0 %	50 %	Non-Coding
85	NC_003098	AAAAAT	2	12	1599709	1599720	83.33 %	16.67 %	0 %	0 %	Non-Coding
86	NC_003098	GAACAT	2	12	1611863	1611874	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
87	NC_003098	TTTTTC	2	12	1632176	1632187	0 %	83.33 %	0 %	16.67 %	Non-Coding
88	NC_003098	CTTTCT	2	12	1634173	1634184	0 %	66.67 %	0 %	33.33 %	Non-Coding
89	NC_003098	TAGGCT	2	12	1635100	1635111	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
90	NC_003098	TCATTA	2	12	1645554	1645565	33.33 %	50 %	0 %	16.67 %	Non-Coding
91	NC_003098	TAATCA	2	12	1665796	1665807	50 %	33.33 %	0 %	16.67 %	Non-Coding
92	NC_003098	TCAACT	2	12	1671498	1671509	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
93	NC_003098	TAAAAA	2	12	1690746	1690757	83.33 %	16.67 %	0 %	0 %	Non-Coding
94	NC_003098	TATTAG	2	12	1692501	1692512	33.33 %	50 %	16.67 %	0 %	Non-Coding
95	NC_003098	CACTTC	2	12	1692532	1692543	16.67 %	33.33 %	0 %	50 %	Non-Coding
96	NC_003098	TCCTTA	2	12	1695620	1695631	16.67 %	50 %	0 %	33.33 %	Non-Coding
97	NC_003098	TTCATC	2	12	1711826	1711837	16.67 %	50 %	0 %	33.33 %	Non-Coding
98	NC_003098	CCAGAA	2	12	1723067	1723078	50 %	0 %	16.67 %	33.33 %	Non-Coding
99	NC_003098	AGGACA	2	12	1774495	1774506	50 %	0 %	33.33 %	16.67 %	Non-Coding
100	NC_003098	AAAAAT	2	12	1778011	1778022	83.33 %	16.67 %	0 %	0 %	Non-Coding
101	NC_003098	TATTAG	2	12	1790051	1790062	33.33 %	50 %	16.67 %	0 %	Non-Coding
102	NC_003098	CACTTC	2	12	1790082	1790093	16.67 %	33.33 %	0 %	50 %	Non-Coding
103	NC_003098	TCCTTA	2	12	1793170	1793181	16.67 %	50 %	0 %	33.33 %	Non-Coding
104	NC_003098	ATGATT	2	12	1806148	1806159	33.33 %	50 %	16.67 %	0 %	Non-Coding
105	NC_003098	CCCGAA	2	12	1851101	1851112	33.33 %	0 %	16.67 %	50 %	Non-Coding
106	NC_003098	TATTAG	2	12	1851976	1851987	33.33 %	50 %	16.67 %	0 %	Non-Coding
107	NC_003098	CACTTC	2	12	1852007	1852018	16.67 %	33.33 %	0 %	50 %	Non-Coding
108	NC_003098	TCCTTA	2	12	1855095	1855106	16.67 %	50 %	0 %	33.33 %	Non-Coding
109	NC_003098	GCATGA	2	12	1929531	1929542	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
110	NC_003098	GTTTTT	2	12	1929594	1929605	0 %	83.33 %	16.67 %	0 %	Non-Coding
111	NC_003098	TAAATT	2	12	1935390	1935401	50 %	50 %	0 %	0 %	Non-Coding
112	NC_003098	TCCAAC	2	12	1940809	1940820	33.33 %	16.67 %	0 %	50 %	Non-Coding
113	NC_003098	ATAATG	2	12	1993415	1993426	50 %	33.33 %	16.67 %	0 %	Non-Coding
114	NC_003098	TGGCGT	2	12	1994900	1994911	0 %	33.33 %	50 %	16.67 %	Non-Coding
115	NC_003098	AGAAGT	2	12	2031754	2031765	50 %	16.67 %	33.33 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.