MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Rickettsia massiliae MTU5 plasmid pRMA

Total Repeats: 58

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_009897	GCA	2	6	29	34	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
2	NC_009897	TAA	2	6	48	53	66.67 %	33.33 %	0 %	0 %	Non-Coding
3	NC_009897	TCC	2	6	2502	2507	0 %	33.33 %	0 %	66.67 %	Non-Coding
4	NC_009897	AAG	2	6	2522	2527	66.67 %	0 %	33.33 %	0 %	Non-Coding
5	NC_009897	TAA	2	6	2540	2545	66.67 %	33.33 %	0 %	0 %	Non-Coding
6	NC_009897	AGT	2	6	2621	2626	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
7	NC_009897	ATC	2	6	2665	2670	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
8	NC_009897	ACA	2	6	6371	6376	66.67 %	0 %	0 %	33.33 %	Non-Coding
9	NC_009897	AGG	2	6	6387	6392	33.33 %	0 %	66.67 %	0 %	Non-Coding
10	NC_009897	AGT	2	6	6418	6423	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
11	NC_009897	TAA	2	6	6445	6450	66.67 %	33.33 %	0 %	0 %	Non-Coding
12	NC_009897	TAC	2	6	6596	6601	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
13	NC_009897	CTT	2	6	6674	6679	0 %	66.67 %	0 %	33.33 %	Non-Coding
14	NC_009897	TGC	2	6	6702	6707	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
15	NC_009897	CAC	2	6	6753	6758	33.33 %	0 %	0 %	66.67 %	Non-Coding
16	NC_009897	TCT	2	6	6797	6802	0 %	66.67 %	0 %	33.33 %	Non-Coding
17	NC_009897	ATC	2	6	6850	6855	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
18	NC_009897	CAT	2	6	6983	6988	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19	NC_009897	TAT	2	6	7019	7024	33.33 %	66.67 %	0 %	0 %	Non-Coding
20	NC_009897	CTT	2	6	7077	7082	0 %	66.67 %	0 %	33.33 %	Non-Coding
21	NC_009897	TGT	2	6	7330	7335	0 %	66.67 %	33.33 %	0 %	Non-Coding
22	NC_009897	AGA	2	6	8157	8162	66.67 %	0 %	33.33 %	0 %	Non-Coding
23	NC_009897	AGA	2	6	9531	9536	66.67 %	0 %	33.33 %	0 %	Non-Coding
24	NC_009897	CAT	2	6	9588	9593	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
25	NC_009897	ACT	2	6	9694	9699	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
26	NC_009897	TAT	2	6	9747	9752	33.33 %	66.67 %	0 %	0 %	Non-Coding
27	NC_009897	AGA	2	6	9881	9886	66.67 %	0 %	33.33 %	0 %	Non-Coding
28	NC_009897	ATA	2	6	9931	9936	66.67 %	33.33 %	0 %	0 %	Non-Coding
29	NC_009897	GAA	2	6	10436	10441	66.67 %	0 %	33.33 %	0 %	Non-Coding
30	NC_009897	TTG	2	6	10547	10552	0 %	66.67 %	33.33 %	0 %	Non-Coding
31	NC_009897	ATA	2	6	10599	10604	66.67 %	33.33 %	0 %	0 %	Non-Coding
32	NC_009897	ATA	2	6	10700	10705	66.67 %	33.33 %	0 %	0 %	Non-Coding
33	NC_009897	GGC	2	6	10729	10734	0 %	0 %	66.67 %	33.33 %	Non-Coding
34	NC_009897	TTA	2	6	10750	10755	33.33 %	66.67 %	0 %	0 %	Non-Coding
35	NC_009897	TTA	2	6	10914	10919	33.33 %	66.67 %	0 %	0 %	Non-Coding
36	NC_009897	CAT	2	6	12392	12397	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
37	NC_009897	AGT	2	6	12489	12494	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
38	NC_009897	TAA	2	6	12522	12527	66.67 %	33.33 %	0 %	0 %	Non-Coding
39	NC_009897	TGG	2	6	12609	12614	0 %	33.33 %	66.67 %	0 %	Non-Coding
40	NC_009897	CTT	3	9	12617	12625	0 %	66.67 %	0 %	33.33 %	Non-Coding
41	NC_009897	TAG	2	6	12758	12763	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
42	NC_009897	TAT	2	6	12766	12771	33.33 %	66.67 %	0 %	0 %	Non-Coding
43	NC_009897	TTA	2	6	12833	12838	33.33 %	66.67 %	0 %	0 %	Non-Coding
44	NC_009897	ATG	2	6	12935	12940	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
45	NC_009897	CTA	2	6	13039	13044	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
46	NC_009897	ATT	2	6	13045	13050	33.33 %	66.67 %	0 %	0 %	Non-Coding
47	NC_009897	TAT	2	6	13189	13194	33.33 %	66.67 %	0 %	0 %	Non-Coding
48	NC_009897	TAC	2	6	13825	13830	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
49	NC_009897	TAA	2	6	13910	13915	66.67 %	33.33 %	0 %	0 %	Non-Coding
50	NC_009897	ATT	2	6	13983	13988	33.33 %	66.67 %	0 %	0 %	Non-Coding
51	NC_009897	GCC	2	6	14013	14018	0 %	0 %	33.33 %	66.67 %	Non-Coding
52	NC_009897	TTG	2	6	14084	14089	0 %	66.67 %	33.33 %	0 %	Non-Coding
53	NC_009897	AGT	2	6	14132	14137	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
54	NC_009897	ATT	2	6	14845	14850	33.33 %	66.67 %	0 %	0 %	Non-Coding
55	NC_009897	ATA	2	6	14864	14869	66.67 %	33.33 %	0 %	0 %	Non-Coding
56	NC_009897	ATT	2	6	14969	14974	33.33 %	66.67 %	0 %	0 %	Non-Coding
57	NC_009897	ATT	2	6	14991	14996	33.33 %	66.67 %	0 %	0 %	Non-Coding
58	NC_009897	GAA	2	6	15065	15070	66.67 %	0 %	33.33 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.