MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Rhizobium etli CFN 42 chromosome

Total Repeats: 12148

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S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
12001	NC_007761	GCACC	2	10	4304746	4304755	20 %	0 %	20 %	60 %	Non-Coding
12002	NC_007761	GCA	2	6	4304820	4304825	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12003	NC_007761	AGC	2	6	4304834	4304839	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12004	NC_007761	GTG	2	6	4306451	4306456	0 %	33.33 %	66.67 %	0 %	Non-Coding
12005	NC_007761	GCG	2	6	4306470	4306475	0 %	0 %	66.67 %	33.33 %	Non-Coding
12006	NC_007761	CGC	3	9	4306491	4306499	0 %	0 %	33.33 %	66.67 %	Non-Coding
12007	NC_007761	TGA	2	6	4306510	4306515	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
12008	NC_007761	TCA	2	6	4306598	4306603	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
12009	NC_007761	GAAT	2	8	4306641	4306648	50 %	25 %	25 %	0 %	Non-Coding
12010	NC_007761	GGAGT	2	10	4306998	4307007	20 %	20 %	60 %	0 %	Non-Coding
12011	NC_007761	CTCGCG	2	12	4307026	4307037	0 %	16.67 %	33.33 %	50 %	Non-Coding
12012	NC_007761	GAAC	2	8	4307143	4307150	50 %	0 %	25 %	25 %	Non-Coding
12013	NC_007761	AGG	2	6	4307900	4307905	33.33 %	0 %	66.67 %	0 %	Non-Coding
12014	NC_007761	ATG	2	6	4309159	4309164	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
12015	NC_007761	ACA	2	6	4309189	4309194	66.67 %	0 %	0 %	33.33 %	Non-Coding
12016	NC_007761	TCT	2	6	4309201	4309206	0 %	66.67 %	0 %	33.33 %	Non-Coding
12017	NC_007761	CGC	2	6	4309223	4309228	0 %	0 %	33.33 %	66.67 %	Non-Coding
12018	NC_007761	CGG	2	6	4309234	4309239	0 %	0 %	66.67 %	33.33 %	Non-Coding
12019	NC_007761	CCT	2	6	4310003	4310008	0 %	33.33 %	0 %	66.67 %	Non-Coding
12020	NC_007761	GCC	2	6	4310174	4310179	0 %	0 %	33.33 %	66.67 %	Non-Coding
12021	NC_007761	AGCG	2	8	4313769	4313776	25 %	0 %	50 %	25 %	Non-Coding
12022	NC_007761	GAG	2	6	4314402	4314407	33.33 %	0 %	66.67 %	0 %	Non-Coding
12023	NC_007761	CGAC	2	8	4314428	4314435	25 %	0 %	25 %	50 %	Non-Coding
12024	NC_007761	GAG	3	9	4314442	4314450	33.33 %	0 %	66.67 %	0 %	Non-Coding
12025	NC_007761	GAG	3	9	4314479	4314487	33.33 %	0 %	66.67 %	0 %	Non-Coding
12026	NC_007761	GATG	2	8	4314499	4314506	25 %	25 %	50 %	0 %	Non-Coding
12027	NC_007761	TGT	2	6	4314507	4314512	0 %	66.67 %	33.33 %	0 %	Non-Coding
12028	NC_007761	GCA	2	6	4314552	4314557	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12029	NC_007761	TTC	2	6	4314721	4314726	0 %	66.67 %	0 %	33.33 %	Non-Coding
12030	NC_007761	GTGA	2	8	4314786	4314793	25 %	25 %	50 %	0 %	Non-Coding
12031	NC_007761	GCT	2	6	4315640	4315645	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
12032	NC_007761	CTA	2	6	4315649	4315654	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
12033	NC_007761	GCG	2	6	4315718	4315723	0 %	0 %	66.67 %	33.33 %	Non-Coding
12034	NC_007761	CGG	2	6	4315785	4315790	0 %	0 %	66.67 %	33.33 %	Non-Coding
12035	NC_007761	CGC	2	6	4318033	4318038	0 %	0 %	33.33 %	66.67 %	Non-Coding
12036	NC_007761	ACCG	2	8	4318055	4318062	25 %	0 %	25 %	50 %	Non-Coding
12037	NC_007761	AGC	2	6	4318067	4318072	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12038	NC_007761	GGC	2	6	4318076	4318081	0 %	0 %	66.67 %	33.33 %	Non-Coding
12039	NC_007761	TTC	2	6	4318086	4318091	0 %	66.67 %	0 %	33.33 %	Non-Coding
12040	NC_007761	AAG	2	6	4318709	4318714	66.67 %	0 %	33.33 %	0 %	Non-Coding
12041	NC_007761	TGC	2	6	4319310	4319315	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
12042	NC_007761	GAC	3	9	4319402	4319410	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12043	NC_007761	CTG	2	6	4322186	4322191	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
12044	NC_007761	CGG	2	6	4322270	4322275	0 %	0 %	66.67 %	33.33 %	Non-Coding
12045	NC_007761	GAT	2	6	4323416	4323421	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
12046	NC_007761	GAA	2	6	4323434	4323439	66.67 %	0 %	33.33 %	0 %	Non-Coding
12047	NC_007761	ATCCG	2	10	4324011	4324020	20 %	20 %	20 %	40 %	Non-Coding
12048	NC_007761	AGA	2	6	4324831	4324836	66.67 %	0 %	33.33 %	0 %	Non-Coding
12049	NC_007761	TGG	2	6	4324837	4324842	0 %	33.33 %	66.67 %	0 %	Non-Coding
12050	NC_007761	A	6	6	4324851	4324856	100 %	0 %	0 %	0 %	Non-Coding
12051	NC_007761	AGCG	2	8	4324922	4324929	25 %	0 %	50 %	25 %	Non-Coding
12052	NC_007761	ATG	2	6	4324931	4324936	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
12053	NC_007761	CGGT	2	8	4324947	4324954	0 %	25 %	50 %	25 %	Non-Coding
12054	NC_007761	AG	4	8	4330871	4330878	50 %	0 %	50 %	0 %	Non-Coding
12055	NC_007761	AGA	2	6	4330881	4330886	66.67 %	0 %	33.33 %	0 %	Non-Coding
12056	NC_007761	ACC	2	6	4330891	4330896	33.33 %	0 %	0 %	66.67 %	Non-Coding
12057	NC_007761	AGGA	2	8	4330972	4330979	50 %	0 %	50 %	0 %	Non-Coding
12058	NC_007761	ACA	2	6	4332594	4332599	66.67 %	0 %	0 %	33.33 %	Non-Coding
12059	NC_007761	CTTGC	2	10	4332610	4332619	0 %	40 %	20 %	40 %	Non-Coding
12060	NC_007761	AG	3	6	4332620	4332625	50 %	0 %	50 %	0 %	Non-Coding
12061	NC_007761	AGGA	2	8	4332630	4332637	50 %	0 %	50 %	0 %	Non-Coding
12062	NC_007761	A	7	7	4332915	4332921	100 %	0 %	0 %	0 %	Non-Coding
12063	NC_007761	AGC	2	6	4332964	4332969	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12064	NC_007761	GGA	2	6	4332999	4333004	33.33 %	0 %	66.67 %	0 %	Non-Coding
12065	NC_007761	GGGC	2	8	4333444	4333451	0 %	0 %	75 %	25 %	Non-Coding
12066	NC_007761	CG	3	6	4333452	4333457	0 %	0 %	50 %	50 %	Non-Coding
12067	NC_007761	CGC	2	6	4333461	4333466	0 %	0 %	33.33 %	66.67 %	Non-Coding
12068	NC_007761	GCC	2	6	4333470	4333475	0 %	0 %	33.33 %	66.67 %	Non-Coding
12069	NC_007761	A	6	6	4333505	4333510	100 %	0 %	0 %	0 %	Non-Coding
12070	NC_007761	TC	3	6	4335344	4335349	0 %	50 %	0 %	50 %	Non-Coding
12071	NC_007761	AAG	2	6	4335376	4335381	66.67 %	0 %	33.33 %	0 %	Non-Coding
12072	NC_007761	AGG	2	6	4335399	4335404	33.33 %	0 %	66.67 %	0 %	Non-Coding
12073	NC_007761	GCC	2	6	4336543	4336548	0 %	0 %	33.33 %	66.67 %	Non-Coding
12074	NC_007761	AGC	2	6	4336590	4336595	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12075	NC_007761	GTCG	2	8	4336605	4336612	0 %	25 %	50 %	25 %	Non-Coding
12076	NC_007761	GAC	2	6	4336688	4336693	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12077	NC_007761	TGTC	2	8	4339378	4339385	0 %	50 %	25 %	25 %	Non-Coding
12078	NC_007761	TGA	2	6	4339396	4339401	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
12079	NC_007761	CG	4	8	4339406	4339413	0 %	0 %	50 %	50 %	Non-Coding
12080	NC_007761	CTC	2	6	4339421	4339426	0 %	33.33 %	0 %	66.67 %	Non-Coding
12081	NC_007761	AG	3	6	4339483	4339488	50 %	0 %	50 %	0 %	Non-Coding
12082	NC_007761	GC	3	6	4339520	4339525	0 %	0 %	50 %	50 %	Non-Coding
12083	NC_007761	CCT	2	6	4339558	4339563	0 %	33.33 %	0 %	66.67 %	Non-Coding
12084	NC_007761	TGA	2	6	4339570	4339575	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
12085	NC_007761	GGC	2	6	4339581	4339586	0 %	0 %	66.67 %	33.33 %	Non-Coding
12086	NC_007761	CCGG	2	8	4342069	4342076	0 %	0 %	50 %	50 %	Non-Coding
12087	NC_007761	CGA	2	6	4342097	4342102	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12088	NC_007761	C	6	6	4343900	4343905	0 %	0 %	0 %	100 %	Non-Coding
12089	NC_007761	AAC	2	6	4343924	4343929	66.67 %	0 %	0 %	33.33 %	Non-Coding
12090	NC_007761	CTG	2	6	4344001	4344006	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
12091	NC_007761	CGA	2	6	4344083	4344088	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12092	NC_007761	TTC	2	6	4344152	4344157	0 %	66.67 %	0 %	33.33 %	Non-Coding
12093	NC_007761	ACG	2	6	4344177	4344182	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12094	NC_007761	CT	3	6	4344211	4344216	0 %	50 %	0 %	50 %	Non-Coding
12095	NC_007761	CGGCT	2	10	4344220	4344229	0 %	20 %	40 %	40 %	Non-Coding
12096	NC_007761	GA	3	6	4344280	4344285	50 %	0 %	50 %	0 %	Non-Coding
12097	NC_007761	AG	3	6	4344292	4344297	50 %	0 %	50 %	0 %	Non-Coding
12098	NC_007761	GAT	2	6	4345431	4345436	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
12099	NC_007761	TGGC	2	8	4345454	4345461	0 %	25 %	50 %	25 %	Non-Coding
12100	NC_007761	CGC	2	6	4346367	4346372	0 %	0 %	33.33 %	66.67 %	Non-Coding
12101	NC_007761	GCG	2	6	4346380	4346385	0 %	0 %	66.67 %	33.33 %	Non-Coding
12102	NC_007761	AGC	2	6	4348062	4348067	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12103	NC_007761	A	6	6	4348075	4348080	100 %	0 %	0 %	0 %	Non-Coding
12104	NC_007761	GCGG	2	8	4348756	4348763	0 %	0 %	75 %	25 %	Non-Coding
12105	NC_007761	CTG	2	6	4348777	4348782	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
12106	NC_007761	ATG	3	9	4349703	4349711	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
12107	NC_007761	TGA	2	6	4349717	4349722	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
12108	NC_007761	TTC	2	6	4349749	4349754	0 %	66.67 %	0 %	33.33 %	Non-Coding
12109	NC_007761	AAAGC	2	10	4349779	4349788	60 %	0 %	20 %	20 %	Non-Coding
12110	NC_007761	AG	3	6	4349793	4349798	50 %	0 %	50 %	0 %	Non-Coding
12111	NC_007761	A	6	6	4349830	4349835	100 %	0 %	0 %	0 %	Non-Coding
12112	NC_007761	A	6	6	4349864	4349869	100 %	0 %	0 %	0 %	Non-Coding
12113	NC_007761	CT	3	6	4349892	4349897	0 %	50 %	0 %	50 %	Non-Coding
12114	NC_007761	T	6	6	4349906	4349911	0 %	100 %	0 %	0 %	Non-Coding
12115	NC_007761	TCT	2	6	4349919	4349924	0 %	66.67 %	0 %	33.33 %	Non-Coding
12116	NC_007761	ATC	2	6	4356155	4356160	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
12117	NC_007761	CGC	2	6	4357890	4357895	0 %	0 %	33.33 %	66.67 %	Non-Coding
12118	NC_007761	AATT	2	8	4359727	4359734	50 %	50 %	0 %	0 %	Non-Coding
12119	NC_007761	GAT	2	6	4359809	4359814	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
12120	NC_007761	AAC	2	6	4362596	4362601	66.67 %	0 %	0 %	33.33 %	Non-Coding
12121	NC_007761	GCG	2	6	4362633	4362638	0 %	0 %	66.67 %	33.33 %	Non-Coding
12122	NC_007761	AGA	2	6	4362661	4362666	66.67 %	0 %	33.33 %	0 %	Non-Coding
12123	NC_007761	CTC	3	9	4364663	4364671	0 %	33.33 %	0 %	66.67 %	Non-Coding
12124	NC_007761	TCG	2	6	4364742	4364747	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
12125	NC_007761	TCATT	2	10	4364765	4364774	20 %	60 %	0 %	20 %	Non-Coding
12126	NC_007761	GAA	2	6	4364778	4364783	66.67 %	0 %	33.33 %	0 %	Non-Coding
12127	NC_007761	TA	3	6	4364807	4364812	50 %	50 %	0 %	0 %	Non-Coding
12128	NC_007761	GAA	2	6	4365606	4365611	66.67 %	0 %	33.33 %	0 %	Non-Coding
12129	NC_007761	CGG	2	6	4365633	4365638	0 %	0 %	66.67 %	33.33 %	Non-Coding
12130	NC_007761	T	6	6	4365641	4365646	0 %	100 %	0 %	0 %	Non-Coding
12131	NC_007761	GGA	2	6	4365650	4365655	33.33 %	0 %	66.67 %	0 %	Non-Coding
12132	NC_007761	AGGATG	2	12	4365683	4365694	33.33 %	16.67 %	50 %	0 %	Non-Coding
12133	NC_007761	GCT	2	6	4365706	4365711	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
12134	NC_007761	GCT	2	6	4365736	4365741	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
12135	NC_007761	CTC	2	6	4367769	4367774	0 %	33.33 %	0 %	66.67 %	Non-Coding
12136	NC_007761	AGC	2	6	4367839	4367844	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12137	NC_007761	AGCC	2	8	4368553	4368560	25 %	0 %	25 %	50 %	Non-Coding
12138	NC_007761	GCG	2	6	4368602	4368607	0 %	0 %	66.67 %	33.33 %	Non-Coding
12139	NC_007761	GGT	2	6	4368650	4368655	0 %	33.33 %	66.67 %	0 %	Non-Coding
12140	NC_007761	ATC	2	6	4371342	4371347	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
12141	NC_007761	TGC	2	6	4374600	4374605	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
12142	NC_007761	CCG	2	6	4377184	4377189	0 %	0 %	33.33 %	66.67 %	Non-Coding
12143	NC_007761	GC	3	6	4378594	4378599	0 %	0 %	50 %	50 %	Non-Coding
12144	NC_007761	GAC	2	6	4379977	4379982	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
12145	NC_007761	AC	3	6	4379991	4379996	50 %	0 %	0 %	50 %	Non-Coding
12146	NC_007761	AGATG	2	10	4380006	4380015	40 %	20 %	40 %	0 %	Non-Coding
12147	NC_007761	CGC	3	9	4380039	4380047	0 %	0 %	33.33 %	66.67 %	Non-Coding
12148	NC_007761	GCT	2	6	4380054	4380059	0 %	33.33 %	33.33 %	33.33 %	Non-Coding

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©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.