MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Ruegeria pomeroyi DSS-3 chromosome

Total Repeats: 120

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_003911	CTATCG	2	12	46066	46077	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
2	NC_003911	GGCAGG	2	12	56634	56645	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
3	NC_003911	TGCCGG	2	12	83715	83726	0 %	16.67 %	50 %	33.33 %	Non-Coding
4	NC_003911	CATCGG	2	12	129603	129614	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
5	NC_003911	CAAACA	2	12	130571	130582	66.67 %	0 %	0 %	33.33 %	Non-Coding
6	NC_003911	ACCATT	2	12	176543	176554	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
7	NC_003911	CGGGGT	2	12	254942	254953	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
8	NC_003911	TGAGAA	2	12	264568	264579	50 %	16.67 %	33.33 %	0 %	Non-Coding
9	NC_003911	ATCCGG	2	12	266475	266486	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
10	NC_003911	GGGCCG	2	12	286549	286560	0 %	0 %	66.67 %	33.33 %	Non-Coding
11	NC_003911	CGTTCA	2	12	296033	296044	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
12	NC_003911	CAGAGC	2	12	300719	300730	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
13	NC_003911	TGCGGC	2	12	354865	354876	0 %	16.67 %	50 %	33.33 %	Non-Coding
14	NC_003911	GCAAGG	2	12	440523	440534	33.33 %	0 %	50 %	16.67 %	Non-Coding
15	NC_003911	CCGCCA	2	12	541555	541566	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
16	NC_003911	GGCGCT	2	12	560722	560733	0 %	16.67 %	50 %	33.33 %	Non-Coding
17	NC_003911	ATGCGC	2	12	560877	560888	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
18	NC_003911	CCTGGG	2	12	561472	561483	0 %	16.67 %	50 %	33.33 %	Non-Coding
19	NC_003911	GTCGGG	2	12	609721	609732	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
20	NC_003911	TCGTCC	2	12	646985	646996	0 %	33.33 %	16.67 %	50 %	Non-Coding
21	NC_003911	CTTGCG	2	12	649179	649190	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
22	NC_003911	TGGCCA	2	12	649851	649862	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
23	NC_003911	CGCGAC	2	12	687798	687809	16.67 %	0 %	33.33 %	50 %	Non-Coding
24	NC_003911	GCGCGG	2	12	710345	710356	0 %	0 %	66.67 %	33.33 %	Non-Coding
25	NC_003911	GCAGTG	2	12	740731	740742	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
26	NC_003911	TCCTGT	2	12	765569	765580	0 %	50 %	16.67 %	33.33 %	Non-Coding
27	NC_003911	GTGACC	2	12	945097	945108	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
28	NC_003911	GGGGCC	2	12	958090	958101	0 %	0 %	66.67 %	33.33 %	Non-Coding
29	NC_003911	GTTGCA	2	12	986341	986352	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
30	NC_003911	TCCGCG	2	12	1087325	1087336	0 %	16.67 %	33.33 %	50 %	Non-Coding
31	NC_003911	CGATCT	2	12	1102782	1102793	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
32	NC_003911	CTGGAA	2	12	1124589	1124600	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
33	NC_003911	GGCGGT	2	12	1124939	1124950	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
34	NC_003911	GGCCAC	2	12	1139637	1139648	16.67 %	0 %	33.33 %	50 %	Non-Coding
35	NC_003911	AAGGGG	2	12	1151324	1151335	33.33 %	0 %	66.67 %	0 %	Non-Coding
36	NC_003911	GGCCAT	2	12	1285045	1285056	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
37	NC_003911	CAGTAA	2	12	1289480	1289491	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
38	NC_003911	TTTCTG	2	12	1301972	1301983	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
39	NC_003911	CGCTGG	2	12	1316508	1316519	0 %	16.67 %	50 %	33.33 %	Non-Coding
40	NC_003911	TGGTGC	2	12	1316901	1316912	0 %	33.33 %	50 %	16.67 %	Non-Coding
41	NC_003911	CCGGCC	2	12	1321345	1321356	0 %	0 %	33.33 %	66.67 %	Non-Coding
42	NC_003911	GGACGA	2	12	1359621	1359632	33.33 %	0 %	50 %	16.67 %	Non-Coding
43	NC_003911	GCTGCG	2	12	1362376	1362387	0 %	16.67 %	50 %	33.33 %	Non-Coding
44	NC_003911	GCGCCC	2	12	1413302	1413313	0 %	0 %	33.33 %	66.67 %	Non-Coding
45	NC_003911	GGGGCA	2	12	1417929	1417940	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
46	NC_003911	CGCTCA	2	12	1445910	1445921	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
47	NC_003911	GAAAAC	2	12	1446076	1446087	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
48	NC_003911	TTGCAT	2	12	1528931	1528942	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
49	NC_003911	GCTTCT	2	12	1540602	1540613	0 %	50 %	16.67 %	33.33 %	Non-Coding
50	NC_003911	GCCGAG	2	12	1612830	1612841	16.67 %	0 %	50 %	33.33 %	Non-Coding
51	NC_003911	GTGCGT	2	12	1613046	1613057	0 %	33.33 %	50 %	16.67 %	Non-Coding
52	NC_003911	GCCCGC	2	12	1613076	1613087	0 %	0 %	33.33 %	66.67 %	Non-Coding
53	NC_003911	GACCAA	2	12	1626850	1626861	50 %	0 %	16.67 %	33.33 %	Non-Coding
54	NC_003911	CCGGGC	2	12	1648700	1648711	0 %	0 %	50 %	50 %	Non-Coding
55	NC_003911	CGGGGG	2	12	1651620	1651631	0 %	0 %	83.33 %	16.67 %	Non-Coding
56	NC_003911	GATCGA	2	12	1651663	1651674	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
57	NC_003911	GGGCGC	2	12	1651749	1651760	0 %	0 %	66.67 %	33.33 %	Non-Coding
58	NC_003911	TCATGA	2	12	1713119	1713130	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
59	NC_003911	TCACCG	2	12	1760629	1760640	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
60	NC_003911	GAACAG	2	12	1779963	1779974	50 %	0 %	33.33 %	16.67 %	Non-Coding
61	NC_003911	TCCGGC	2	12	1884362	1884373	0 %	16.67 %	33.33 %	50 %	Non-Coding
62	NC_003911	GCCGGG	2	12	1886483	1886494	0 %	0 %	66.67 %	33.33 %	Non-Coding
63	NC_003911	CCTCGC	2	12	1916993	1917004	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
64	NC_003911	GTCCAT	2	12	1930417	1930428	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
65	NC_003911	CGATCA	2	12	1941040	1941051	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
66	NC_003911	CAGGAT	2	12	1941059	1941070	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
67	NC_003911	GCAGGG	2	12	1990969	1990980	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
68	NC_003911	TTTCCC	2	12	2005219	2005230	0 %	50 %	0 %	50 %	Non-Coding
69	NC_003911	GGGCTG	2	12	2155011	2155022	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
70	NC_003911	TCCGGC	2	12	2165894	2165905	0 %	16.67 %	33.33 %	50 %	Non-Coding
71	NC_003911	AGCCGC	2	12	2251746	2251757	16.67 %	0 %	33.33 %	50 %	Non-Coding
72	NC_003911	CCGCGC	2	12	2295164	2295175	0 %	0 %	33.33 %	66.67 %	Non-Coding
73	NC_003911	CAAGGT	2	12	2353686	2353697	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
74	NC_003911	CGATTG	2	12	2399399	2399410	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
75	NC_003911	CCCCGG	2	12	2402497	2402508	0 %	0 %	33.33 %	66.67 %	Non-Coding
76	NC_003911	TTGCCC	2	12	2413805	2413816	0 %	33.33 %	16.67 %	50 %	Non-Coding
77	NC_003911	GTCAAA	2	12	2426463	2426474	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
78	NC_003911	CCGCGC	2	12	2440541	2440552	0 %	0 %	33.33 %	66.67 %	Non-Coding
79	NC_003911	ATCGAC	2	12	2502488	2502499	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
80	NC_003911	GGGTCG	2	12	2558338	2558349	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
81	NC_003911	CCTCGG	2	12	2559172	2559183	0 %	16.67 %	33.33 %	50 %	Non-Coding
82	NC_003911	ACCGGC	2	12	2628550	2628561	16.67 %	0 %	33.33 %	50 %	Non-Coding
83	NC_003911	GGCCTC	2	12	2654869	2654880	0 %	16.67 %	33.33 %	50 %	Non-Coding
84	NC_003911	CAAGAC	2	12	2709437	2709448	50 %	0 %	16.67 %	33.33 %	Non-Coding
85	NC_003911	GTCTTG	2	12	2710201	2710212	0 %	50 %	33.33 %	16.67 %	Non-Coding
86	NC_003911	CGGTAA	2	12	2730390	2730401	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
87	NC_003911	GCCCGC	2	12	2738400	2738411	0 %	0 %	33.33 %	66.67 %	Non-Coding
88	NC_003911	CGGCCC	2	12	2774866	2774877	0 %	0 %	33.33 %	66.67 %	Non-Coding
89	NC_003911	CCTCGA	2	12	2807315	2807326	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
90	NC_003911	CGCCCC	2	12	2807343	2807354	0 %	0 %	16.67 %	83.33 %	Non-Coding
91	NC_003911	GATCGG	2	12	2807612	2807623	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
92	NC_003911	GCCTGC	2	12	2846168	2846179	0 %	16.67 %	33.33 %	50 %	Non-Coding
93	NC_003911	TTTCGT	2	12	2910980	2910991	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
94	NC_003911	GCATGC	2	12	2911749	2911760	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
95	NC_003911	TCGGCA	2	12	2914995	2915006	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
96	NC_003911	TGCCGC	2	12	2916313	2916324	0 %	16.67 %	33.33 %	50 %	Non-Coding
97	NC_003911	ACGTCA	2	12	3112534	3112545	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
98	NC_003911	CGAAAA	2	12	3168953	3168964	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
99	NC_003911	CCCTCT	2	12	3198415	3198426	0 %	33.33 %	0 %	66.67 %	Non-Coding
100	NC_003911	CCGGTT	2	12	3243410	3243421	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
101	NC_003911	GCAAGA	2	12	3244723	3244734	50 %	0 %	33.33 %	16.67 %	Non-Coding
102	NC_003911	CTGGCC	2	12	3272889	3272900	0 %	16.67 %	33.33 %	50 %	Non-Coding
103	NC_003911	TGGCCA	2	12	3358723	3358734	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
104	NC_003911	AAACTT	2	12	3404011	3404022	50 %	33.33 %	0 %	16.67 %	Non-Coding
105	NC_003911	TCCGGT	2	12	3417853	3417864	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
106	NC_003911	CCGGAT	2	12	3463056	3463067	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
107	NC_003911	GAAAAC	2	12	3521733	3521744	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
108	NC_003911	CCAGCC	2	12	3552035	3552046	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
109	NC_003911	CGCGGG	2	12	3586905	3586916	0 %	0 %	66.67 %	33.33 %	Non-Coding
110	NC_003911	CCATGG	2	12	3594150	3594161	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
111	NC_003911	TTGCCG	2	12	3622721	3622732	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
112	NC_003911	GATGGC	2	12	3657275	3657286	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
113	NC_003911	ACAGAA	2	12	3675986	3675997	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
114	NC_003911	CCTTGC	2	12	3741531	3741542	0 %	33.33 %	16.67 %	50 %	Non-Coding
115	NC_003911	GTTCCG	2	12	3782152	3782163	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
116	NC_003911	CACAGG	2	12	3841818	3841829	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
117	NC_003911	GACCCC	2	12	3905601	3905612	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
118	NC_003911	CTGCCG	2	12	3955057	3955068	0 %	16.67 %	33.33 %	50 %	Non-Coding
119	NC_003911	GTGCAA	2	12	3974104	3974115	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
120	NC_003911	CCGGAT	2	12	4011393	4011404	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.