MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Methanocaldococcus jannaschii DSM 2661 plasmid small ECE

Total Repeats: 96

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_001733	ATAGT	2	10	6	15	40 %	40 %	20 %	0 %	Non-Coding
2	NC_001733	AT	3	6	39	44	50 %	50 %	0 %	0 %	Non-Coding
3	NC_001733	TTTA	2	8	82	89	25 %	75 %	0 %	0 %	Non-Coding
4	NC_001733	TAT	2	6	112	117	33.33 %	66.67 %	0 %	0 %	Non-Coding
5	NC_001733	AAT	2	6	134	139	66.67 %	33.33 %	0 %	0 %	Non-Coding
6	NC_001733	ATT	2	6	159	164	33.33 %	66.67 %	0 %	0 %	Non-Coding
7	NC_001733	TTAA	2	8	168	175	50 %	50 %	0 %	0 %	Non-Coding
8	NC_001733	TTC	2	6	236	241	0 %	66.67 %	0 %	33.33 %	Non-Coding
9	NC_001733	TTCCTC	2	12	257	268	0 %	50 %	0 %	50 %	Non-Coding
10	NC_001733	TTC	2	6	269	274	0 %	66.67 %	0 %	33.33 %	Non-Coding
11	NC_001733	TTC	2	6	371	376	0 %	66.67 %	0 %	33.33 %	Non-Coding
12	NC_001733	GGAGC	2	10	400	409	20 %	0 %	60 %	20 %	Non-Coding
13	NC_001733	A	6	6	4824	4829	100 %	0 %	0 %	0 %	Non-Coding
14	NC_001733	ATT	2	6	4835	4840	33.33 %	66.67 %	0 %	0 %	Non-Coding
15	NC_001733	ATC	2	6	5287	5292	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
16	NC_001733	ACCTC	2	10	5297	5306	20 %	20 %	0 %	60 %	Non-Coding
17	NC_001733	TAT	2	6	5307	5312	33.33 %	66.67 %	0 %	0 %	Non-Coding
18	NC_001733	TTC	2	6	5345	5350	0 %	66.67 %	0 %	33.33 %	Non-Coding
19	NC_001733	T	6	6	5401	5406	0 %	100 %	0 %	0 %	Non-Coding
20	NC_001733	TCA	2	6	5909	5914	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
21	NC_001733	TTA	2	6	5915	5920	33.33 %	66.67 %	0 %	0 %	Non-Coding
22	NC_001733	TAAA	2	8	5930	5937	75 %	25 %	0 %	0 %	Non-Coding
23	NC_001733	AATT	2	8	5965	5972	50 %	50 %	0 %	0 %	Non-Coding
24	NC_001733	TAT	2	6	5973	5978	33.33 %	66.67 %	0 %	0 %	Non-Coding
25	NC_001733	AAT	2	6	6077	6082	66.67 %	33.33 %	0 %	0 %	Non-Coding
26	NC_001733	ATA	2	6	6085	6090	66.67 %	33.33 %	0 %	0 %	Non-Coding
27	NC_001733	ATTA	2	8	6111	6118	50 %	50 %	0 %	0 %	Non-Coding
28	NC_001733	AATT	2	8	6130	6137	50 %	50 %	0 %	0 %	Non-Coding
29	NC_001733	GAAAA	2	10	6182	6191	80 %	0 %	20 %	0 %	Non-Coding
30	NC_001733	A	6	6	6246	6251	100 %	0 %	0 %	0 %	Non-Coding
31	NC_001733	TTA	2	6	6272	6277	33.33 %	66.67 %	0 %	0 %	Non-Coding
32	NC_001733	TA	3	6	6325	6330	50 %	50 %	0 %	0 %	Non-Coding
33	NC_001733	AAT	2	6	6864	6869	66.67 %	33.33 %	0 %	0 %	Non-Coding
34	NC_001733	AAT	2	6	6886	6891	66.67 %	33.33 %	0 %	0 %	Non-Coding
35	NC_001733	ACC	2	6	6950	6955	33.33 %	0 %	0 %	66.67 %	Non-Coding
36	NC_001733	TTA	2	6	12670	12675	33.33 %	66.67 %	0 %	0 %	Non-Coding
37	NC_001733	AAT	2	6	12687	12692	66.67 %	33.33 %	0 %	0 %	Non-Coding
38	NC_001733	T	6	6	12715	12720	0 %	100 %	0 %	0 %	Non-Coding
39	NC_001733	AAAC	2	8	12841	12848	75 %	0 %	0 %	25 %	Non-Coding
40	NC_001733	AAT	2	6	12961	12966	66.67 %	33.33 %	0 %	0 %	Non-Coding
41	NC_001733	ATA	2	6	13003	13008	66.67 %	33.33 %	0 %	0 %	Non-Coding
42	NC_001733	AC	4	8	13065	13072	50 %	0 %	0 %	50 %	Non-Coding
43	NC_001733	GAAG	2	8	13123	13130	50 %	0 %	50 %	0 %	Non-Coding
44	NC_001733	AAC	2	6	13148	13153	66.67 %	0 %	0 %	33.33 %	Non-Coding
45	NC_001733	GTA	2	6	14057	14062	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
46	NC_001733	TAT	2	6	14066	14071	33.33 %	66.67 %	0 %	0 %	Non-Coding
47	NC_001733	TAG	2	6	14129	14134	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
48	NC_001733	TATAT	2	10	14189	14198	40 %	60 %	0 %	0 %	Non-Coding
49	NC_001733	A	6	6	14236	14241	100 %	0 %	0 %	0 %	Non-Coding
50	NC_001733	TAA	2	6	14293	14298	66.67 %	33.33 %	0 %	0 %	Non-Coding
51	NC_001733	AGT	2	6	14382	14387	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
52	NC_001733	ATT	2	6	14396	14401	33.33 %	66.67 %	0 %	0 %	Non-Coding
53	NC_001733	TTTA	2	8	15035	15042	25 %	75 %	0 %	0 %	Non-Coding
54	NC_001733	AT	3	6	15048	15053	50 %	50 %	0 %	0 %	Non-Coding
55	NC_001733	TAT	2	6	15070	15075	33.33 %	66.67 %	0 %	0 %	Non-Coding
56	NC_001733	A	6	6	15083	15088	100 %	0 %	0 %	0 %	Non-Coding
57	NC_001733	TAT	2	6	15099	15104	33.33 %	66.67 %	0 %	0 %	Non-Coding
58	NC_001733	TAA	2	6	15116	15121	66.67 %	33.33 %	0 %	0 %	Non-Coding
59	NC_001733	TTG	2	6	15175	15180	0 %	66.67 %	33.33 %	0 %	Non-Coding
60	NC_001733	A	6	6	15199	15204	100 %	0 %	0 %	0 %	Non-Coding
61	NC_001733	TATT	2	8	15257	15264	25 %	75 %	0 %	0 %	Non-Coding
62	NC_001733	TATC	2	8	15271	15278	25 %	50 %	0 %	25 %	Non-Coding
63	NC_001733	T	7	7	15289	15295	0 %	100 %	0 %	0 %	Non-Coding
64	NC_001733	GTTTG	2	10	15364	15373	0 %	60 %	40 %	0 %	Non-Coding
65	NC_001733	AATTAT	2	12	15400	15411	50 %	50 %	0 %	0 %	Non-Coding
66	NC_001733	TCCTT	2	10	15442	15451	0 %	60 %	0 %	40 %	Non-Coding
67	NC_001733	TTCTT	2	10	15498	15507	0 %	80 %	0 %	20 %	Non-Coding
68	NC_001733	T	6	6	15514	15519	0 %	100 %	0 %	0 %	Non-Coding
69	NC_001733	ATT	2	6	15544	15549	33.33 %	66.67 %	0 %	0 %	Non-Coding
70	NC_001733	AT	3	6	15627	15632	50 %	50 %	0 %	0 %	Non-Coding
71	NC_001733	TAA	2	6	15638	15643	66.67 %	33.33 %	0 %	0 %	Non-Coding
72	NC_001733	AT	3	6	15664	15669	50 %	50 %	0 %	0 %	Non-Coding
73	NC_001733	TAA	2	6	15678	15683	66.67 %	33.33 %	0 %	0 %	Non-Coding
74	NC_001733	AT	3	6	15694	15699	50 %	50 %	0 %	0 %	Non-Coding
75	NC_001733	TTTC	2	8	15710	15717	0 %	75 %	0 %	25 %	Non-Coding
76	NC_001733	TAT	2	6	15744	15749	33.33 %	66.67 %	0 %	0 %	Non-Coding
77	NC_001733	GCA	2	6	15877	15882	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
78	NC_001733	TAGT	2	8	15947	15954	25 %	50 %	25 %	0 %	Non-Coding
79	NC_001733	T	6	6	15978	15983	0 %	100 %	0 %	0 %	Non-Coding
80	NC_001733	CATAA	2	10	16013	16022	60 %	20 %	0 %	20 %	Non-Coding
81	NC_001733	GCA	2	6	16031	16036	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
82	NC_001733	CATTG	2	10	16061	16070	20 %	40 %	20 %	20 %	Non-Coding
83	NC_001733	TAA	2	6	16127	16132	66.67 %	33.33 %	0 %	0 %	Non-Coding
84	NC_001733	TACT	2	8	16169	16176	25 %	50 %	0 %	25 %	Non-Coding
85	NC_001733	AAC	3	9	16177	16185	66.67 %	0 %	0 %	33.33 %	Non-Coding
86	NC_001733	TGT	2	6	16193	16198	0 %	66.67 %	33.33 %	0 %	Non-Coding
87	NC_001733	AG	3	6	16241	16246	50 %	0 %	50 %	0 %	Non-Coding
88	NC_001733	ACT	2	6	16249	16254	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
89	NC_001733	ATA	2	6	16282	16287	66.67 %	33.33 %	0 %	0 %	Non-Coding
90	NC_001733	TAT	2	6	16311	16316	33.33 %	66.67 %	0 %	0 %	Non-Coding
91	NC_001733	ATAA	2	8	16330	16337	75 %	25 %	0 %	0 %	Non-Coding
92	NC_001733	ATA	2	6	16371	16376	66.67 %	33.33 %	0 %	0 %	Non-Coding
93	NC_001733	TCCA	2	8	16399	16406	25 %	25 %	0 %	50 %	Non-Coding
94	NC_001733	ATT	2	6	16440	16445	33.33 %	66.67 %	0 %	0 %	Non-Coding
95	NC_001733	CAA	2	6	16454	16459	66.67 %	0 %	0 %	33.33 %	Non-Coding
96	NC_001733	T	7	7	16488	16494	0 %	100 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.