MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Leptospira borgpetersenii serovar Hardjo-bovis str. JB197 chromosome 1

Total Repeats: 19170

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S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
19001	NC_008510	A	6	6	3547834	3547839	100 %	0 %	0 %	0 %	Non-Coding
19002	NC_008510	CTT	2	6	3547913	3547918	0 %	66.67 %	0 %	33.33 %	Non-Coding
19003	NC_008510	A	6	6	3547993	3547998	100 %	0 %	0 %	0 %	Non-Coding
19004	NC_008510	GT	3	6	3548015	3548020	0 %	50 %	50 %	0 %	Non-Coding
19005	NC_008510	GATT	2	8	3548028	3548035	25 %	50 %	25 %	0 %	Non-Coding
19006	NC_008510	CAG	2	6	3548040	3548045	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
19007	NC_008510	CCA	2	6	3548049	3548054	33.33 %	0 %	0 %	66.67 %	Non-Coding
19008	NC_008510	A	7	7	3548054	3548060	100 %	0 %	0 %	0 %	Non-Coding
19009	NC_008510	ATA	2	6	3548109	3548114	66.67 %	33.33 %	0 %	0 %	Non-Coding
19010	NC_008510	T	7	7	3548251	3548257	0 %	100 %	0 %	0 %	Non-Coding
19011	NC_008510	AT	3	6	3548263	3548268	50 %	50 %	0 %	0 %	Non-Coding
19012	NC_008510	TAT	2	6	3548280	3548285	33.33 %	66.67 %	0 %	0 %	Non-Coding
19013	NC_008510	A	6	6	3548316	3548321	100 %	0 %	0 %	0 %	Non-Coding
19014	NC_008510	ATTT	2	8	3549850	3549857	25 %	75 %	0 %	0 %	Non-Coding
19015	NC_008510	TA	3	6	3549888	3549893	50 %	50 %	0 %	0 %	Non-Coding
19016	NC_008510	T	6	6	3549913	3549918	0 %	100 %	0 %	0 %	Non-Coding
19017	NC_008510	A	6	6	3549926	3549931	100 %	0 %	0 %	0 %	Non-Coding
19018	NC_008510	AAG	2	6	3550042	3550047	66.67 %	0 %	33.33 %	0 %	Non-Coding
19019	NC_008510	CTT	2	6	3550094	3550099	0 %	66.67 %	0 %	33.33 %	Non-Coding
19020	NC_008510	CT	3	6	3550118	3550123	0 %	50 %	0 %	50 %	Non-Coding
19021	NC_008510	TCC	2	6	3550174	3550179	0 %	33.33 %	0 %	66.67 %	Non-Coding
19022	NC_008510	A	6	6	3550268	3550273	100 %	0 %	0 %	0 %	Non-Coding
19023	NC_008510	AAG	2	6	3550302	3550307	66.67 %	0 %	33.33 %	0 %	Non-Coding
19024	NC_008510	AAGA	2	8	3550316	3550323	75 %	0 %	25 %	0 %	Non-Coding
19025	NC_008510	CG	3	6	3550380	3550385	0 %	0 %	50 %	50 %	Non-Coding
19026	NC_008510	TTA	2	6	3550456	3550461	33.33 %	66.67 %	0 %	0 %	Non-Coding
19027	NC_008510	TA	3	6	3550484	3550489	50 %	50 %	0 %	0 %	Non-Coding
19028	NC_008510	GAAA	2	8	3550508	3550515	75 %	0 %	25 %	0 %	Non-Coding
19029	NC_008510	CTA	2	6	3550602	3550607	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19030	NC_008510	TA	3	6	3550642	3550647	50 %	50 %	0 %	0 %	Non-Coding
19031	NC_008510	CCTA	2	8	3550677	3550684	25 %	25 %	0 %	50 %	Non-Coding
19032	NC_008510	A	6	6	3550719	3550724	100 %	0 %	0 %	0 %	Non-Coding
19033	NC_008510	GAATCG	2	12	3550735	3550746	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
19034	NC_008510	ATA	2	6	3550789	3550794	66.67 %	33.33 %	0 %	0 %	Non-Coding
19035	NC_008510	CAT	2	6	3550846	3550851	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19036	NC_008510	GATC	2	8	3550865	3550872	25 %	25 %	25 %	25 %	Non-Coding
19037	NC_008510	TTC	2	6	3550898	3550903	0 %	66.67 %	0 %	33.33 %	Non-Coding
19038	NC_008510	AGA	2	6	3551072	3551077	66.67 %	0 %	33.33 %	0 %	Non-Coding
19039	NC_008510	AGA	2	6	3551205	3551210	66.67 %	0 %	33.33 %	0 %	Non-Coding
19040	NC_008510	TTTCG	2	10	3551253	3551262	0 %	60 %	20 %	20 %	Non-Coding
19041	NC_008510	TTC	2	6	3551314	3551319	0 %	66.67 %	0 %	33.33 %	Non-Coding
19042	NC_008510	CAAAA	2	10	3551408	3551417	80 %	0 %	0 %	20 %	Non-Coding
19043	NC_008510	A	7	7	3551414	3551420	100 %	0 %	0 %	0 %	Non-Coding
19044	NC_008510	GAAAA	2	10	3551440	3551449	80 %	0 %	20 %	0 %	Non-Coding
19045	NC_008510	AAC	2	6	3551529	3551534	66.67 %	0 %	0 %	33.33 %	Non-Coding
19046	NC_008510	TCAAA	2	10	3551554	3551563	60 %	20 %	0 %	20 %	Non-Coding
19047	NC_008510	TCA	2	6	3551568	3551573	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19048	NC_008510	A	6	6	3551573	3551578	100 %	0 %	0 %	0 %	Non-Coding
19049	NC_008510	GAATG	2	10	3551588	3551597	40 %	20 %	40 %	0 %	Non-Coding
19050	NC_008510	TTG	2	6	3551605	3551610	0 %	66.67 %	33.33 %	0 %	Non-Coding
19051	NC_008510	ATT	2	6	3551823	3551828	33.33 %	66.67 %	0 %	0 %	Non-Coding
19052	NC_008510	AGGA	2	8	3551860	3551867	50 %	0 %	50 %	0 %	Non-Coding
19053	NC_008510	TGA	2	6	3551880	3551885	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
19054	NC_008510	TTA	2	6	3551891	3551896	33.33 %	66.67 %	0 %	0 %	Non-Coding
19055	NC_008510	A	6	6	3551899	3551904	100 %	0 %	0 %	0 %	Non-Coding
19056	NC_008510	AAC	2	6	3551972	3551977	66.67 %	0 %	0 %	33.33 %	Non-Coding
19057	NC_008510	ATT	2	6	3552003	3552008	33.33 %	66.67 %	0 %	0 %	Non-Coding
19058	NC_008510	AAG	2	6	3552027	3552032	66.67 %	0 %	33.33 %	0 %	Non-Coding
19059	NC_008510	T	6	6	3552070	3552075	0 %	100 %	0 %	0 %	Non-Coding
19060	NC_008510	T	6	6	3552082	3552087	0 %	100 %	0 %	0 %	Non-Coding
19061	NC_008510	AAT	2	6	3552097	3552102	66.67 %	33.33 %	0 %	0 %	Non-Coding
19062	NC_008510	CGA	2	6	3552128	3552133	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
19063	NC_008510	CAA	2	6	3552251	3552256	66.67 %	0 %	0 %	33.33 %	Non-Coding
19064	NC_008510	TCC	2	6	3552261	3552266	0 %	33.33 %	0 %	66.67 %	Non-Coding
19065	NC_008510	TCT	2	6	3552278	3552283	0 %	66.67 %	0 %	33.33 %	Non-Coding
19066	NC_008510	ATT	2	6	3552296	3552301	33.33 %	66.67 %	0 %	0 %	Non-Coding
19067	NC_008510	TTG	2	6	3553513	3553518	0 %	66.67 %	33.33 %	0 %	Non-Coding
19068	NC_008510	AGG	2	6	3553591	3553596	33.33 %	0 %	66.67 %	0 %	Non-Coding
19069	NC_008510	TTGAA	2	10	3553622	3553631	40 %	40 %	20 %	0 %	Non-Coding
19070	NC_008510	TAT	2	6	3553642	3553647	33.33 %	66.67 %	0 %	0 %	Non-Coding
19071	NC_008510	A	7	7	3553662	3553668	100 %	0 %	0 %	0 %	Non-Coding
19072	NC_008510	T	7	7	3553729	3553735	0 %	100 %	0 %	0 %	Non-Coding
19073	NC_008510	TCC	2	6	3553820	3553825	0 %	33.33 %	0 %	66.67 %	Non-Coding
19074	NC_008510	TTA	2	6	3554953	3554958	33.33 %	66.67 %	0 %	0 %	Non-Coding
19075	NC_008510	A	6	6	3554991	3554996	100 %	0 %	0 %	0 %	Non-Coding
19076	NC_008510	GAA	2	6	3554997	3555002	66.67 %	0 %	33.33 %	0 %	Non-Coding
19077	NC_008510	TCG	2	6	3555045	3555050	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
19078	NC_008510	GTCT	2	8	3555085	3555092	0 %	50 %	25 %	25 %	Non-Coding
19079	NC_008510	A	6	6	3555113	3555118	100 %	0 %	0 %	0 %	Non-Coding
19080	NC_008510	GTT	2	6	3556095	3556100	0 %	66.67 %	33.33 %	0 %	Non-Coding
19081	NC_008510	CAA	2	6	3556121	3556126	66.67 %	0 %	0 %	33.33 %	Non-Coding
19082	NC_008510	AATT	2	8	3556171	3556178	50 %	50 %	0 %	0 %	Non-Coding
19083	NC_008510	A	6	6	3556197	3556202	100 %	0 %	0 %	0 %	Non-Coding
19084	NC_008510	TTTC	2	8	3556218	3556225	0 %	75 %	0 %	25 %	Non-Coding
19085	NC_008510	T	6	6	3556229	3556234	0 %	100 %	0 %	0 %	Non-Coding
19086	NC_008510	A	8	8	3556255	3556262	100 %	0 %	0 %	0 %	Non-Coding
19087	NC_008510	TTAT	2	8	3556283	3556290	25 %	75 %	0 %	0 %	Non-Coding
19088	NC_008510	T	7	7	3556667	3556673	0 %	100 %	0 %	0 %	Non-Coding
19089	NC_008510	T	6	6	3556707	3556712	0 %	100 %	0 %	0 %	Non-Coding
19090	NC_008510	CAA	2	6	3556772	3556777	66.67 %	0 %	0 %	33.33 %	Non-Coding
19091	NC_008510	A	6	6	3556799	3556804	100 %	0 %	0 %	0 %	Non-Coding
19092	NC_008510	GAA	2	6	3556870	3556875	66.67 %	0 %	33.33 %	0 %	Non-Coding
19093	NC_008510	GAA	2	6	3556912	3556917	66.67 %	0 %	33.33 %	0 %	Non-Coding
19094	NC_008510	TG	3	6	3557480	3557485	0 %	50 %	50 %	0 %	Non-Coding
19095	NC_008510	T	7	7	3562382	3562388	0 %	100 %	0 %	0 %	Non-Coding
19096	NC_008510	A	7	7	3562406	3562412	100 %	0 %	0 %	0 %	Non-Coding
19097	NC_008510	AAC	2	6	3564057	3564062	66.67 %	0 %	0 %	33.33 %	Non-Coding
19098	NC_008510	A	7	7	3564075	3564081	100 %	0 %	0 %	0 %	Non-Coding
19099	NC_008510	TTA	2	6	3564091	3564096	33.33 %	66.67 %	0 %	0 %	Non-Coding
19100	NC_008510	T	7	7	3564101	3564107	0 %	100 %	0 %	0 %	Non-Coding
19101	NC_008510	AAT	2	6	3565364	3565369	66.67 %	33.33 %	0 %	0 %	Non-Coding
19102	NC_008510	AGA	2	6	3565382	3565387	66.67 %	0 %	33.33 %	0 %	Non-Coding
19103	NC_008510	AGG	2	6	3565398	3565403	33.33 %	0 %	66.67 %	0 %	Non-Coding
19104	NC_008510	TTG	2	6	3565409	3565414	0 %	66.67 %	33.33 %	0 %	Non-Coding
19105	NC_008510	TCG	2	6	3565532	3565537	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
19106	NC_008510	ATT	2	6	3565563	3565568	33.33 %	66.67 %	0 %	0 %	Non-Coding
19107	NC_008510	A	6	6	3565578	3565583	100 %	0 %	0 %	0 %	Non-Coding
19108	NC_008510	A	6	6	3565590	3565595	100 %	0 %	0 %	0 %	Non-Coding
19109	NC_008510	TAT	2	6	3565726	3565731	33.33 %	66.67 %	0 %	0 %	Non-Coding
19110	NC_008510	ACTT	2	8	3566494	3566501	25 %	50 %	0 %	25 %	Non-Coding
19111	NC_008510	TCT	2	6	3567810	3567815	0 %	66.67 %	0 %	33.33 %	Non-Coding
19112	NC_008510	CTT	2	6	3567863	3567868	0 %	66.67 %	0 %	33.33 %	Non-Coding
19113	NC_008510	A	6	6	3567900	3567905	100 %	0 %	0 %	0 %	Non-Coding
19114	NC_008510	AT	3	6	3567911	3567916	50 %	50 %	0 %	0 %	Non-Coding
19115	NC_008510	AGGA	2	8	3567963	3567970	50 %	0 %	50 %	0 %	Non-Coding
19116	NC_008510	TAA	2	6	3570645	3570650	66.67 %	33.33 %	0 %	0 %	Non-Coding
19117	NC_008510	AGA	2	6	3570664	3570669	66.67 %	0 %	33.33 %	0 %	Non-Coding
19118	NC_008510	AGG	2	6	3570680	3570685	33.33 %	0 %	66.67 %	0 %	Non-Coding
19119	NC_008510	TTG	2	6	3570691	3570696	0 %	66.67 %	33.33 %	0 %	Non-Coding
19120	NC_008510	TCG	2	6	3570808	3570813	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
19121	NC_008510	ATT	2	6	3570839	3570844	33.33 %	66.67 %	0 %	0 %	Non-Coding
19122	NC_008510	A	6	6	3570854	3570859	100 %	0 %	0 %	0 %	Non-Coding
19123	NC_008510	A	6	6	3570866	3570871	100 %	0 %	0 %	0 %	Non-Coding
19124	NC_008510	CT	3	6	3570910	3570915	0 %	50 %	0 %	50 %	Non-Coding
19125	NC_008510	AAG	2	6	3570924	3570929	66.67 %	0 %	33.33 %	0 %	Non-Coding
19126	NC_008510	AAG	2	6	3570933	3570938	66.67 %	0 %	33.33 %	0 %	Non-Coding
19127	NC_008510	CAAAA	2	10	3570956	3570965	80 %	0 %	0 %	20 %	Non-Coding
19128	NC_008510	A	6	6	3570962	3570967	100 %	0 %	0 %	0 %	Non-Coding
19129	NC_008510	TGA	2	6	3571075	3571080	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
19130	NC_008510	ATA	2	6	3571315	3571320	66.67 %	33.33 %	0 %	0 %	Non-Coding
19131	NC_008510	AAG	2	6	3572850	3572855	66.67 %	0 %	33.33 %	0 %	Non-Coding
19132	NC_008510	TTTG	2	8	3572857	3572864	0 %	75 %	25 %	0 %	Non-Coding
19133	NC_008510	T	6	6	3572865	3572870	0 %	100 %	0 %	0 %	Non-Coding
19134	NC_008510	GAT	2	6	3572916	3572921	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
19135	NC_008510	TCC	2	6	3573720	3573725	0 %	33.33 %	0 %	66.67 %	Non-Coding
19136	NC_008510	AAG	2	6	3573762	3573767	66.67 %	0 %	33.33 %	0 %	Non-Coding
19137	NC_008510	TCGC	2	8	3573778	3573785	0 %	25 %	25 %	50 %	Non-Coding
19138	NC_008510	TCAA	2	8	3573947	3573954	50 %	25 %	0 %	25 %	Non-Coding
19139	NC_008510	AGC	2	6	3573975	3573980	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
19140	NC_008510	ATC	2	6	3574032	3574037	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19141	NC_008510	TAT	2	6	3574111	3574116	33.33 %	66.67 %	0 %	0 %	Non-Coding
19142	NC_008510	AAG	2	6	3574177	3574182	66.67 %	0 %	33.33 %	0 %	Non-Coding
19143	NC_008510	TTAA	2	8	3574196	3574203	50 %	50 %	0 %	0 %	Non-Coding
19144	NC_008510	T	7	7	3575030	3575036	0 %	100 %	0 %	0 %	Non-Coding
19145	NC_008510	GATT	2	8	3575052	3575059	25 %	50 %	25 %	0 %	Non-Coding
19146	NC_008510	TTC	2	6	3575069	3575074	0 %	66.67 %	0 %	33.33 %	Non-Coding
19147	NC_008510	AG	3	6	3575147	3575152	50 %	0 %	50 %	0 %	Non-Coding
19148	NC_008510	ACAG	2	8	3575226	3575233	50 %	0 %	25 %	25 %	Non-Coding
19149	NC_008510	CCGTC	2	10	3575293	3575302	0 %	20 %	20 %	60 %	Non-Coding
19150	NC_008510	ATC	2	6	3575322	3575327	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19151	NC_008510	TCATT	2	10	3575338	3575347	20 %	60 %	0 %	20 %	Non-Coding
19152	NC_008510	ACT	2	6	3575384	3575389	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19153	NC_008510	A	6	6	3575431	3575436	100 %	0 %	0 %	0 %	Non-Coding
19154	NC_008510	ATA	2	6	3575449	3575454	66.67 %	33.33 %	0 %	0 %	Non-Coding
19155	NC_008510	TTC	2	6	3575476	3575481	0 %	66.67 %	0 %	33.33 %	Non-Coding
19156	NC_008510	T	6	6	3575569	3575574	0 %	100 %	0 %	0 %	Non-Coding
19157	NC_008510	TTC	2	6	3575595	3575600	0 %	66.67 %	0 %	33.33 %	Non-Coding
19158	NC_008510	GCT	2	6	3575822	3575827	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
19159	NC_008510	TCA	2	6	3575845	3575850	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
19160	NC_008510	GAT	2	6	3575861	3575866	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
19161	NC_008510	AAAC	2	8	3575869	3575876	75 %	0 %	0 %	25 %	Non-Coding
19162	NC_008510	GAA	2	6	3575900	3575905	66.67 %	0 %	33.33 %	0 %	Non-Coding
19163	NC_008510	AAT	2	6	3575930	3575935	66.67 %	33.33 %	0 %	0 %	Non-Coding
19164	NC_008510	AGG	2	6	3576017	3576022	33.33 %	0 %	66.67 %	0 %	Non-Coding
19165	NC_008510	A	6	6	3576028	3576033	100 %	0 %	0 %	0 %	Non-Coding
19166	NC_008510	GTT	2	6	3576065	3576070	0 %	66.67 %	33.33 %	0 %	Non-Coding
19167	NC_008510	AATT	2	8	3576075	3576082	50 %	50 %	0 %	0 %	Non-Coding
19168	NC_008510	CAA	2	6	3576153	3576158	66.67 %	0 %	0 %	33.33 %	Non-Coding
19169	NC_008510	TTG	2	6	3576164	3576169	0 %	66.67 %	33.33 %	0 %	Non-Coding
19170	NC_008510	ACTC	2	8	3576233	3576240	25 %	25 %	0 %	50 %	Non-Coding

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©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.