MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Lactobacillus casei ATCC 334 plasmid 1

Total Repeats: 146

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_008502	CAA	2	6	20	25	66.67 %	0 %	0 %	33.33 %	Non-Coding
2	NC_008502	CAG	2	6	33	38	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
3	NC_008502	TTG	2	6	74	79	0 %	66.67 %	33.33 %	0 %	Non-Coding
4	NC_008502	TGC	2	6	169	174	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
5	NC_008502	GGT	2	6	184	189	0 %	33.33 %	66.67 %	0 %	Non-Coding
6	NC_008502	ATG	2	6	280	285	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
7	NC_008502	TCA	2	6	338	343	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
8	NC_008502	CCA	2	6	2712	2717	33.33 %	0 %	0 %	66.67 %	Non-Coding
9	NC_008502	GCA	2	6	2832	2837	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
10	NC_008502	TTA	2	6	3352	3357	33.33 %	66.67 %	0 %	0 %	Non-Coding
11	NC_008502	AAT	2	6	3376	3381	66.67 %	33.33 %	0 %	0 %	Non-Coding
12	NC_008502	ATA	2	6	3428	3433	66.67 %	33.33 %	0 %	0 %	Non-Coding
13	NC_008502	CTG	2	6	3533	3538	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
14	NC_008502	GAG	2	6	3567	3572	33.33 %	0 %	66.67 %	0 %	Non-Coding
15	NC_008502	CGT	2	6	3666	3671	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
16	NC_008502	TAC	2	6	3713	3718	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
17	NC_008502	CGT	2	6	3887	3892	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
18	NC_008502	TTG	2	6	3899	3904	0 %	66.67 %	33.33 %	0 %	Non-Coding
19	NC_008502	GGC	2	6	3954	3959	0 %	0 %	66.67 %	33.33 %	Non-Coding
20	NC_008502	TGG	2	6	4121	4126	0 %	33.33 %	66.67 %	0 %	Non-Coding
21	NC_008502	CTG	2	6	4193	4198	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
22	NC_008502	CGT	2	6	4326	4331	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
23	NC_008502	TAC	2	6	4373	4378	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
24	NC_008502	CGT	2	6	4548	4553	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
25	NC_008502	CGC	2	6	5100	5105	0 %	0 %	33.33 %	66.67 %	Non-Coding
26	NC_008502	ACA	2	6	5298	5303	66.67 %	0 %	0 %	33.33 %	Non-Coding
27	NC_008502	CGC	2	6	5316	5321	0 %	0 %	33.33 %	66.67 %	Non-Coding
28	NC_008502	TAA	2	6	5325	5330	66.67 %	33.33 %	0 %	0 %	Non-Coding
29	NC_008502	AAC	2	6	5331	5336	66.67 %	0 %	0 %	33.33 %	Non-Coding
30	NC_008502	GAG	2	6	5355	5360	33.33 %	0 %	66.67 %	0 %	Non-Coding
31	NC_008502	ATT	2	6	5470	5475	33.33 %	66.67 %	0 %	0 %	Non-Coding
32	NC_008502	GGA	2	6	5507	5512	33.33 %	0 %	66.67 %	0 %	Non-Coding
33	NC_008502	ATG	3	9	5548	5556	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
34	NC_008502	TCA	2	6	5621	5626	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
35	NC_008502	TCA	2	6	5643	5648	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
36	NC_008502	CTT	2	6	5703	5708	0 %	66.67 %	0 %	33.33 %	Non-Coding
37	NC_008502	CAG	2	6	5823	5828	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
38	NC_008502	TCT	2	6	5882	5887	0 %	66.67 %	0 %	33.33 %	Non-Coding
39	NC_008502	TAG	2	6	5889	5894	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
40	NC_008502	CAT	2	6	5896	5901	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
41	NC_008502	TAA	2	6	7375	7380	66.67 %	33.33 %	0 %	0 %	Non-Coding
42	NC_008502	CCT	2	6	7381	7386	0 %	33.33 %	0 %	66.67 %	Non-Coding
43	NC_008502	TCC	2	6	9139	9144	0 %	33.33 %	0 %	66.67 %	Non-Coding
44	NC_008502	TCA	2	6	10134	10139	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
45	NC_008502	CAA	2	6	10244	10249	66.67 %	0 %	0 %	33.33 %	Non-Coding
46	NC_008502	AGG	2	6	10492	10497	33.33 %	0 %	66.67 %	0 %	Non-Coding
47	NC_008502	CAA	2	6	10584	10589	66.67 %	0 %	0 %	33.33 %	Non-Coding
48	NC_008502	CGA	2	6	10616	10621	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
49	NC_008502	TGC	2	6	10718	10723	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
50	NC_008502	TTG	2	6	10768	10773	0 %	66.67 %	33.33 %	0 %	Non-Coding
51	NC_008502	ACG	2	6	11256	11261	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
52	NC_008502	GTA	2	6	11431	11436	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
53	NC_008502	ACG	2	6	11478	11483	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
54	NC_008502	CTC	2	6	11577	11582	0 %	33.33 %	0 %	66.67 %	Non-Coding
55	NC_008502	CAG	2	6	11611	11616	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
56	NC_008502	TAA	2	6	12086	12091	66.67 %	33.33 %	0 %	0 %	Non-Coding
57	NC_008502	CAT	2	6	13877	13882	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
58	NC_008502	CGG	2	6	13907	13912	0 %	0 %	66.67 %	33.33 %	Non-Coding
59	NC_008502	ATT	2	6	13958	13963	33.33 %	66.67 %	0 %	0 %	Non-Coding
60	NC_008502	GCA	2	6	14149	14154	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
61	NC_008502	TCA	2	6	14180	14185	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
62	NC_008502	GAT	2	6	14237	14242	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
63	NC_008502	TGA	2	6	14257	14262	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
64	NC_008502	ATT	2	6	14274	14279	33.33 %	66.67 %	0 %	0 %	Non-Coding
65	NC_008502	GTT	2	6	14375	14380	0 %	66.67 %	33.33 %	0 %	Non-Coding
66	NC_008502	TGA	2	6	14536	14541	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
67	NC_008502	GAG	2	6	14601	14606	33.33 %	0 %	66.67 %	0 %	Non-Coding
68	NC_008502	AGC	2	6	14620	14625	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
69	NC_008502	ATT	2	6	14701	14706	33.33 %	66.67 %	0 %	0 %	Non-Coding
70	NC_008502	CAT	2	6	14712	14717	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
71	NC_008502	CGG	2	6	14907	14912	0 %	0 %	66.67 %	33.33 %	Non-Coding
72	NC_008502	CGG	2	6	14937	14942	0 %	0 %	66.67 %	33.33 %	Non-Coding
73	NC_008502	GCC	2	6	15061	15066	0 %	0 %	33.33 %	66.67 %	Non-Coding
74	NC_008502	GTT	2	6	15190	15195	0 %	66.67 %	33.33 %	0 %	Non-Coding
75	NC_008502	GAG	2	6	16687	16692	33.33 %	0 %	66.67 %	0 %	Non-Coding
76	NC_008502	GCT	2	6	17588	17593	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
77	NC_008502	AAG	2	6	17637	17642	66.67 %	0 %	33.33 %	0 %	Non-Coding
78	NC_008502	TGG	2	6	17700	17705	0 %	33.33 %	66.67 %	0 %	Non-Coding
79	NC_008502	ACC	2	6	17884	17889	33.33 %	0 %	0 %	66.67 %	Non-Coding
80	NC_008502	CGT	2	6	18057	18062	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
81	NC_008502	CAG	2	6	18075	18080	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
82	NC_008502	ATA	2	6	18113	18118	66.67 %	33.33 %	0 %	0 %	Non-Coding
83	NC_008502	AGA	2	6	18320	18325	66.67 %	0 %	33.33 %	0 %	Non-Coding
84	NC_008502	TTG	2	6	18399	18404	0 %	66.67 %	33.33 %	0 %	Non-Coding
85	NC_008502	CAC	2	6	19933	19938	33.33 %	0 %	0 %	66.67 %	Non-Coding
86	NC_008502	TGT	2	6	19966	19971	0 %	66.67 %	33.33 %	0 %	Non-Coding
87	NC_008502	GTT	2	6	20026	20031	0 %	66.67 %	33.33 %	0 %	Non-Coding
88	NC_008502	TCT	2	6	20066	20071	0 %	66.67 %	0 %	33.33 %	Non-Coding
89	NC_008502	ATT	2	6	20168	20173	33.33 %	66.67 %	0 %	0 %	Non-Coding
90	NC_008502	ATT	2	6	20181	20186	33.33 %	66.67 %	0 %	0 %	Non-Coding
91	NC_008502	AAG	2	6	20224	20229	66.67 %	0 %	33.33 %	0 %	Non-Coding
92	NC_008502	AAC	2	6	20281	20286	66.67 %	0 %	0 %	33.33 %	Non-Coding
93	NC_008502	ATT	2	6	20301	20306	33.33 %	66.67 %	0 %	0 %	Non-Coding
94	NC_008502	AGC	2	6	20459	20464	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
95	NC_008502	TAA	2	6	20700	20705	66.67 %	33.33 %	0 %	0 %	Non-Coding
96	NC_008502	CTT	2	6	20871	20876	0 %	66.67 %	0 %	33.33 %	Non-Coding
97	NC_008502	TTC	2	6	21006	21011	0 %	66.67 %	0 %	33.33 %	Non-Coding
98	NC_008502	ATA	2	6	21041	21046	66.67 %	33.33 %	0 %	0 %	Non-Coding
99	NC_008502	TTG	2	6	21047	21052	0 %	66.67 %	33.33 %	0 %	Non-Coding
100	NC_008502	CTT	2	6	21068	21073	0 %	66.67 %	0 %	33.33 %	Non-Coding
101	NC_008502	CGA	2	6	21123	21128	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
102	NC_008502	TCT	2	6	21301	21306	0 %	66.67 %	0 %	33.33 %	Non-Coding
103	NC_008502	CAA	2	6	21344	21349	66.67 %	0 %	0 %	33.33 %	Non-Coding
104	NC_008502	ATC	2	6	21417	21422	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
105	NC_008502	TAC	3	9	21499	21507	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
106	NC_008502	TAC	2	6	21513	21518	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
107	NC_008502	TAT	2	6	21642	21647	33.33 %	66.67 %	0 %	0 %	Non-Coding
108	NC_008502	TAG	2	6	21735	21740	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
109	NC_008502	TCT	2	6	21774	21779	0 %	66.67 %	0 %	33.33 %	Non-Coding
110	NC_008502	CCA	2	6	21821	21826	33.33 %	0 %	0 %	66.67 %	Non-Coding
111	NC_008502	AGT	2	6	21859	21864	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
112	NC_008502	TCA	2	6	21931	21936	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
113	NC_008502	TTC	2	6	21947	21952	0 %	66.67 %	0 %	33.33 %	Non-Coding
114	NC_008502	GTC	2	6	21953	21958	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
115	NC_008502	TGA	2	6	21984	21989	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
116	NC_008502	AAT	2	6	22019	22024	66.67 %	33.33 %	0 %	0 %	Non-Coding
117	NC_008502	CTG	2	6	22048	22053	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
118	NC_008502	GAG	2	6	22082	22087	33.33 %	0 %	66.67 %	0 %	Non-Coding
119	NC_008502	CGT	2	6	22181	22186	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
120	NC_008502	TAC	2	6	22228	22233	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
121	NC_008502	CGT	2	6	22403	22408	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
122	NC_008502	ATC	2	6	22893	22898	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
123	NC_008502	CAT	2	6	22959	22964	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
124	NC_008502	CGG	2	6	23066	23071	0 %	0 %	66.67 %	33.33 %	Non-Coding
125	NC_008502	CTT	2	6	23090	23095	0 %	66.67 %	0 %	33.33 %	Non-Coding
126	NC_008502	TCA	2	6	23146	23151	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
127	NC_008502	ATG	2	6	24453	24458	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
128	NC_008502	TTC	2	6	24490	24495	0 %	66.67 %	0 %	33.33 %	Non-Coding
129	NC_008502	TTG	2	6	24679	24684	0 %	66.67 %	33.33 %	0 %	Non-Coding
130	NC_008502	TAG	2	6	26205	26210	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
131	NC_008502	ATG	2	6	26257	26262	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
132	NC_008502	GAA	2	6	26291	26296	66.67 %	0 %	33.33 %	0 %	Non-Coding
133	NC_008502	TGG	2	6	26319	26324	0 %	33.33 %	66.67 %	0 %	Non-Coding
134	NC_008502	TAA	2	6	26391	26396	66.67 %	33.33 %	0 %	0 %	Non-Coding
135	NC_008502	TTA	2	6	26397	26402	33.33 %	66.67 %	0 %	0 %	Non-Coding
136	NC_008502	AGA	2	6	26984	26989	66.67 %	0 %	33.33 %	0 %	Non-Coding
137	NC_008502	ATA	2	6	27071	27076	66.67 %	33.33 %	0 %	0 %	Non-Coding
138	NC_008502	TAT	2	6	27654	27659	33.33 %	66.67 %	0 %	0 %	Non-Coding
139	NC_008502	CAT	2	6	28347	28352	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
140	NC_008502	TCG	2	6	28404	28409	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
141	NC_008502	ATT	2	6	28495	28500	33.33 %	66.67 %	0 %	0 %	Non-Coding
142	NC_008502	ACT	2	6	28518	28523	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
143	NC_008502	CTG	2	6	28651	28656	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
144	NC_008502	CGT	2	6	28784	28789	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
145	NC_008502	TAC	2	6	28831	28836	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
146	NC_008502	CAT	2	6	29025	29030	33.33 %	33.33 %	0 %	33.33 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.