MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Lactococcus lactis subsp. lactis Il1403 chromosome

Total Repeats: 141

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_002662	TTAAAT	2	12	10847	10858	50 %	50 %	0 %	0 %	Non-Coding
2	NC_002662	ATTTTT	2	12	89999	90010	16.67 %	83.33 %	0 %	0 %	Non-Coding
3	NC_002662	TGAAAT	2	12	133931	133942	50 %	33.33 %	16.67 %	0 %	Non-Coding
4	NC_002662	CATGAT	2	12	146887	146898	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
5	NC_002662	ATATAA	2	12	160303	160314	66.67 %	33.33 %	0 %	0 %	Non-Coding
6	NC_002662	ATAAAA	2	12	179513	179524	83.33 %	16.67 %	0 %	0 %	Non-Coding
7	NC_002662	TAAAAA	2	12	179575	179586	83.33 %	16.67 %	0 %	0 %	Non-Coding
8	NC_002662	TGAAAA	2	12	222947	222958	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
9	NC_002662	AAATAG	2	12	226029	226040	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
10	NC_002662	TAAAAA	2	12	242616	242627	83.33 %	16.67 %	0 %	0 %	Non-Coding
11	NC_002662	AAAAGA	2	12	252646	252657	83.33 %	0 %	16.67 %	0 %	Non-Coding
12	NC_002662	TAAATT	2	12	257527	257538	50 %	50 %	0 %	0 %	Non-Coding
13	NC_002662	ATTCTA	2	12	265564	265575	33.33 %	50 %	0 %	16.67 %	Non-Coding
14	NC_002662	ATTTAA	2	12	357742	357753	50 %	50 %	0 %	0 %	Non-Coding
15	NC_002662	TTAAAA	2	12	378407	378418	66.67 %	33.33 %	0 %	0 %	Non-Coding
16	NC_002662	TAAAAT	2	12	380682	380693	66.67 %	33.33 %	0 %	0 %	Non-Coding
17	NC_002662	AATAAA	2	12	380838	380849	83.33 %	16.67 %	0 %	0 %	Non-Coding
18	NC_002662	TAAAAA	2	12	415625	415636	83.33 %	16.67 %	0 %	0 %	Non-Coding
19	NC_002662	ATGAAA	2	12	418800	418811	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
20	NC_002662	TTTTTA	2	12	423615	423626	16.67 %	83.33 %	0 %	0 %	Non-Coding
21	NC_002662	ACACCG	2	12	429260	429271	33.33 %	0 %	16.67 %	50 %	Non-Coding
22	NC_002662	TAATGC	2	12	434147	434158	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
23	NC_002662	AAATAA	2	12	435044	435055	83.33 %	16.67 %	0 %	0 %	Non-Coding
24	NC_002662	TGTTTT	2	12	488188	488199	0 %	83.33 %	16.67 %	0 %	Non-Coding
25	NC_002662	TTTTAG	2	12	494142	494153	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
26	NC_002662	TAAAAT	2	12	510464	510475	66.67 %	33.33 %	0 %	0 %	Non-Coding
27	NC_002662	TGGAAG	2	12	542251	542262	33.33 %	16.67 %	50 %	0 %	Non-Coding
28	NC_002662	GTAAAG	2	12	561056	561067	50 %	16.67 %	33.33 %	0 %	Non-Coding
29	NC_002662	ATTTTT	2	12	573363	573374	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_002662	AGAAAA	2	12	588474	588485	83.33 %	0 %	16.67 %	0 %	Non-Coding
31	NC_002662	ATGTAA	2	12	596046	596057	50 %	33.33 %	16.67 %	0 %	Non-Coding
32	NC_002662	ATTTAT	2	12	597626	597637	33.33 %	66.67 %	0 %	0 %	Non-Coding
33	NC_002662	GGTTAA	2	12	614116	614127	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
34	NC_002662	TAAACA	2	12	636927	636938	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
35	NC_002662	GATTTA	2	12	651911	651922	33.33 %	50 %	16.67 %	0 %	Non-Coding
36	NC_002662	TATAAA	2	12	679376	679387	66.67 %	33.33 %	0 %	0 %	Non-Coding
37	NC_002662	TTTTTA	2	12	684944	684955	16.67 %	83.33 %	0 %	0 %	Non-Coding
38	NC_002662	AACATA	2	12	728063	728074	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
39	NC_002662	AATTAA	2	12	735326	735337	66.67 %	33.33 %	0 %	0 %	Non-Coding
40	NC_002662	CAAAAA	2	12	742522	742533	83.33 %	0 %	0 %	16.67 %	Non-Coding
41	NC_002662	ATTTAA	2	12	743707	743718	50 %	50 %	0 %	0 %	Non-Coding
42	NC_002662	AGCATT	2	12	743737	743748	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
43	NC_002662	AATTTA	2	12	763910	763921	50 %	50 %	0 %	0 %	Non-Coding
44	NC_002662	TTATTT	2	12	787200	787211	16.67 %	83.33 %	0 %	0 %	Non-Coding
45	NC_002662	AGATTT	2	12	820194	820205	33.33 %	50 %	16.67 %	0 %	Non-Coding
46	NC_002662	TATAAA	2	12	841183	841194	66.67 %	33.33 %	0 %	0 %	Non-Coding
47	NC_002662	TCAAAA	2	12	852037	852048	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
48	NC_002662	CTGTAG	2	12	870028	870039	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
49	NC_002662	AAAAGT	2	12	917224	917235	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
50	NC_002662	CAAAAA	2	12	919568	919579	83.33 %	0 %	0 %	16.67 %	Non-Coding
51	NC_002662	TCTTAA	2	12	921496	921507	33.33 %	50 %	0 %	16.67 %	Non-Coding
52	NC_002662	TAAAAA	2	12	931925	931936	83.33 %	16.67 %	0 %	0 %	Non-Coding
53	NC_002662	TAAATA	2	12	934845	934856	66.67 %	33.33 %	0 %	0 %	Non-Coding
54	NC_002662	AAGAAA	2	12	946452	946463	83.33 %	0 %	16.67 %	0 %	Non-Coding
55	NC_002662	TTTAAT	2	12	949756	949767	33.33 %	66.67 %	0 %	0 %	Non-Coding
56	NC_002662	TTTAAA	2	12	1021694	1021705	50 %	50 %	0 %	0 %	Non-Coding
57	NC_002662	TAAAAA	2	12	1035671	1035682	83.33 %	16.67 %	0 %	0 %	Non-Coding
58	NC_002662	AAAGAA	2	12	1036483	1036494	83.33 %	0 %	16.67 %	0 %	Non-Coding
59	NC_002662	ACTAGA	2	12	1039866	1039877	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
60	NC_002662	TTTTAA	2	12	1073365	1073376	33.33 %	66.67 %	0 %	0 %	Non-Coding
61	NC_002662	ATTTTT	2	12	1079782	1079793	16.67 %	83.33 %	0 %	0 %	Non-Coding
62	NC_002662	TTTTTA	2	12	1100713	1100724	16.67 %	83.33 %	0 %	0 %	Non-Coding
63	NC_002662	AGTAAA	2	12	1163102	1163113	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
64	NC_002662	AAAAAT	2	12	1188657	1188668	83.33 %	16.67 %	0 %	0 %	Non-Coding
65	NC_002662	TCAAAA	2	12	1189741	1189752	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
66	NC_002662	TATTGT	2	12	1191312	1191323	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
67	NC_002662	TGCAAA	2	12	1210653	1210664	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
68	NC_002662	TTTGGA	2	12	1212138	1212149	16.67 %	50 %	33.33 %	0 %	Non-Coding
69	NC_002662	AAAAAG	2	12	1214018	1214029	83.33 %	0 %	16.67 %	0 %	Non-Coding
70	NC_002662	ATATAG	2	12	1219612	1219623	50 %	33.33 %	16.67 %	0 %	Non-Coding
71	NC_002662	GAACTG	2	12	1224424	1224435	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
72	NC_002662	GCTGGG	2	12	1240481	1240492	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
73	NC_002662	CAAGTA	2	12	1269116	1269127	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
74	NC_002662	AGGATA	2	12	1278933	1278944	50 %	16.67 %	33.33 %	0 %	Non-Coding
75	NC_002662	ATTATA	2	12	1300130	1300141	50 %	50 %	0 %	0 %	Non-Coding
76	NC_002662	TTAATT	2	12	1346461	1346472	33.33 %	66.67 %	0 %	0 %	Non-Coding
77	NC_002662	TTTTTA	2	12	1359561	1359572	16.67 %	83.33 %	0 %	0 %	Non-Coding
78	NC_002662	CTTTTT	2	12	1378811	1378822	0 %	83.33 %	0 %	16.67 %	Non-Coding
79	NC_002662	TAAAAA	2	12	1398248	1398259	83.33 %	16.67 %	0 %	0 %	Non-Coding
80	NC_002662	TAAGTT	2	12	1413019	1413030	33.33 %	50 %	16.67 %	0 %	Non-Coding
81	NC_002662	TAAAAA	2	12	1413731	1413742	83.33 %	16.67 %	0 %	0 %	Non-Coding
82	NC_002662	AATTTT	2	12	1413772	1413783	33.33 %	66.67 %	0 %	0 %	Non-Coding
83	NC_002662	CATTTT	2	12	1471454	1471465	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
84	NC_002662	TAAATC	2	12	1472709	1472720	50 %	33.33 %	0 %	16.67 %	Non-Coding
85	NC_002662	TAATAG	2	12	1489010	1489021	50 %	33.33 %	16.67 %	0 %	Non-Coding
86	NC_002662	ACGTTT	2	12	1511049	1511060	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
87	NC_002662	TATTTT	2	12	1535071	1535082	16.67 %	83.33 %	0 %	0 %	Non-Coding
88	NC_002662	ATATTA	2	12	1550396	1550407	50 %	50 %	0 %	0 %	Non-Coding
89	NC_002662	TAAAAA	2	12	1563072	1563083	83.33 %	16.67 %	0 %	0 %	Non-Coding
90	NC_002662	CTATTT	2	12	1610606	1610617	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
91	NC_002662	TTTTAC	2	12	1618223	1618234	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
92	NC_002662	ATCTTT	2	12	1626601	1626612	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
93	NC_002662	TTTACA	2	12	1628204	1628215	33.33 %	50 %	0 %	16.67 %	Non-Coding
94	NC_002662	TAAAAA	2	12	1640245	1640256	83.33 %	16.67 %	0 %	0 %	Non-Coding
95	NC_002662	CTTCGG	2	12	1643985	1643996	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
96	NC_002662	ATTTTG	2	12	1678262	1678273	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
97	NC_002662	TAAAAA	2	12	1682515	1682526	83.33 %	16.67 %	0 %	0 %	Non-Coding
98	NC_002662	CAAAAA	2	12	1709212	1709223	83.33 %	0 %	0 %	16.67 %	Non-Coding
99	NC_002662	ATTTTT	2	12	1717854	1717865	16.67 %	83.33 %	0 %	0 %	Non-Coding
100	NC_002662	ATTTTC	2	12	1718268	1718279	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
101	NC_002662	CTTTCT	2	12	1728833	1728844	0 %	66.67 %	0 %	33.33 %	Non-Coding
102	NC_002662	CATTTT	2	12	1732865	1732876	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
103	NC_002662	AAAATA	2	12	1757764	1757775	83.33 %	16.67 %	0 %	0 %	Non-Coding
104	NC_002662	TTAAAA	2	12	1758915	1758926	66.67 %	33.33 %	0 %	0 %	Non-Coding
105	NC_002662	CATTTT	2	12	1880365	1880376	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
106	NC_002662	ATTTTA	2	12	1896448	1896459	33.33 %	66.67 %	0 %	0 %	Non-Coding
107	NC_002662	TAAAAT	2	12	1901106	1901117	66.67 %	33.33 %	0 %	0 %	Non-Coding
108	NC_002662	TATTTT	2	12	1927040	1927051	16.67 %	83.33 %	0 %	0 %	Non-Coding
109	NC_002662	TCAATT	2	12	1972481	1972492	33.33 %	50 %	0 %	16.67 %	Non-Coding
110	NC_002662	TTATCT	2	12	1975744	1975755	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
111	NC_002662	CTTCCA	2	12	1981402	1981413	16.67 %	33.33 %	0 %	50 %	Non-Coding
112	NC_002662	TTTTCA	2	12	1991245	1991256	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
113	NC_002662	AATTTT	2	12	1999205	1999216	33.33 %	66.67 %	0 %	0 %	Non-Coding
114	NC_002662	TATTTG	2	12	2013509	2013520	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
115	NC_002662	ATAAAA	2	12	2025676	2025687	83.33 %	16.67 %	0 %	0 %	Non-Coding
116	NC_002662	TTTTTA	2	12	2026446	2026457	16.67 %	83.33 %	0 %	0 %	Non-Coding
117	NC_002662	TACAAA	2	12	2033702	2033713	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
118	NC_002662	TTTTTA	2	12	2068764	2068775	16.67 %	83.33 %	0 %	0 %	Non-Coding
119	NC_002662	AGAATG	2	12	2078448	2078459	50 %	16.67 %	33.33 %	0 %	Non-Coding
120	NC_002662	CTTTTT	2	12	2086989	2087000	0 %	83.33 %	0 %	16.67 %	Non-Coding
121	NC_002662	AGTGTT	2	12	2087046	2087057	16.67 %	50 %	33.33 %	0 %	Non-Coding
122	NC_002662	TAAAAA	2	12	2089878	2089889	83.33 %	16.67 %	0 %	0 %	Non-Coding
123	NC_002662	ACAATT	2	12	2091156	2091167	50 %	33.33 %	0 %	16.67 %	Non-Coding
124	NC_002662	CAAAAT	2	12	2092262	2092273	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
125	NC_002662	AGAACT	2	12	2092467	2092478	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
126	NC_002662	TATAAA	2	12	2107891	2107902	66.67 %	33.33 %	0 %	0 %	Non-Coding
127	NC_002662	AATTAT	2	12	2107940	2107951	50 %	50 %	0 %	0 %	Non-Coding
128	NC_002662	CAAAAT	2	12	2142382	2142393	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
129	NC_002662	TTTTTA	2	12	2157268	2157279	16.67 %	83.33 %	0 %	0 %	Non-Coding
130	NC_002662	TAAAAA	2	12	2189102	2189113	83.33 %	16.67 %	0 %	0 %	Non-Coding
131	NC_002662	CTTCCA	2	12	2218464	2218475	16.67 %	33.33 %	0 %	50 %	Non-Coding
132	NC_002662	CTTCCA	2	12	2260975	2260986	16.67 %	33.33 %	0 %	50 %	Non-Coding
133	NC_002662	GCAATT	2	12	2266913	2266924	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
134	NC_002662	CCAAAA	2	12	2267201	2267212	66.67 %	0 %	0 %	33.33 %	Non-Coding
135	NC_002662	CATAAT	2	12	2287011	2287022	50 %	33.33 %	0 %	16.67 %	Non-Coding
136	NC_002662	AAGCAA	2	12	2316259	2316270	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
137	NC_002662	ATTTTT	2	12	2327677	2327688	16.67 %	83.33 %	0 %	0 %	Non-Coding
138	NC_002662	CAAAAG	2	12	2333617	2333628	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
139	NC_002662	CCCGAA	2	12	2340785	2340796	33.33 %	0 %	16.67 %	50 %	Non-Coding
140	NC_002662	CTTCCA	2	12	2341205	2341216	16.67 %	33.33 %	0 %	50 %	Non-Coding
141	NC_002662	CTTCCA	2	12	2360384	2360395	16.67 %	33.33 %	0 %	50 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.