MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Dinoroseobacter shibae DFL 12 plasmid pDSHI02

Total Repeats: 157

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_009956	TGA	2	6	100	105	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
2	NC_009956	CTC	2	6	1834	1839	0 %	33.33 %	0 %	66.67 %	Non-Coding
3	NC_009956	CCG	2	6	1857	1862	0 %	0 %	33.33 %	66.67 %	Non-Coding
4	NC_009956	GGC	2	6	6977	6982	0 %	0 %	66.67 %	33.33 %	Non-Coding
5	NC_009956	GGC	2	6	6989	6994	0 %	0 %	66.67 %	33.33 %	Non-Coding
6	NC_009956	GCG	2	6	6995	7000	0 %	0 %	66.67 %	33.33 %	Non-Coding
7	NC_009956	GGT	2	6	7014	7019	0 %	33.33 %	66.67 %	0 %	Non-Coding
8	NC_009956	TCC	2	6	10540	10545	0 %	33.33 %	0 %	66.67 %	Non-Coding
9	NC_009956	GCG	2	6	10598	10603	0 %	0 %	66.67 %	33.33 %	Non-Coding
10	NC_009956	AGA	2	6	12890	12895	66.67 %	0 %	33.33 %	0 %	Non-Coding
11	NC_009956	CGG	2	6	18862	18867	0 %	0 %	66.67 %	33.33 %	Non-Coding
12	NC_009956	CAT	2	6	18875	18880	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
13	NC_009956	TCC	3	9	21498	21506	0 %	33.33 %	0 %	66.67 %	Non-Coding
14	NC_009956	GGC	2	6	21997	22002	0 %	0 %	66.67 %	33.33 %	Non-Coding
15	NC_009956	CAA	2	6	22019	22024	66.67 %	0 %	0 %	33.33 %	Non-Coding
16	NC_009956	CGC	2	6	24894	24899	0 %	0 %	33.33 %	66.67 %	Non-Coding
17	NC_009956	CCG	2	6	24900	24905	0 %	0 %	33.33 %	66.67 %	Non-Coding
18	NC_009956	AAT	2	6	24934	24939	66.67 %	33.33 %	0 %	0 %	Non-Coding
19	NC_009956	GCG	2	6	24967	24972	0 %	0 %	66.67 %	33.33 %	Non-Coding
20	NC_009956	GGA	2	6	26223	26228	33.33 %	0 %	66.67 %	0 %	Non-Coding
21	NC_009956	CTC	2	6	31775	31780	0 %	33.33 %	0 %	66.67 %	Non-Coding
22	NC_009956	GCG	2	6	32257	32262	0 %	0 %	66.67 %	33.33 %	Non-Coding
23	NC_009956	CGA	2	6	32282	32287	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
24	NC_009956	GCC	2	6	32424	32429	0 %	0 %	33.33 %	66.67 %	Non-Coding
25	NC_009956	GGC	2	6	37380	37385	0 %	0 %	66.67 %	33.33 %	Non-Coding
26	NC_009956	ATC	2	6	37400	37405	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
27	NC_009956	TGC	2	6	37457	37462	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
28	NC_009956	GCG	2	6	37955	37960	0 %	0 %	66.67 %	33.33 %	Non-Coding
29	NC_009956	CTG	2	6	38179	38184	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
30	NC_009956	ATT	2	6	45639	45644	33.33 %	66.67 %	0 %	0 %	Non-Coding
31	NC_009956	AAC	2	6	45741	45746	66.67 %	0 %	0 %	33.33 %	Non-Coding
32	NC_009956	CCG	2	6	48171	48176	0 %	0 %	33.33 %	66.67 %	Non-Coding
33	NC_009956	CGG	2	6	48181	48186	0 %	0 %	66.67 %	33.33 %	Non-Coding
34	NC_009956	GAA	2	6	51777	51782	66.67 %	0 %	33.33 %	0 %	Non-Coding
35	NC_009956	CTC	2	6	52044	52049	0 %	33.33 %	0 %	66.67 %	Non-Coding
36	NC_009956	CGT	2	6	52108	52113	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
37	NC_009956	GCG	2	6	52149	52154	0 %	0 %	66.67 %	33.33 %	Non-Coding
38	NC_009956	GCA	2	6	53392	53397	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
39	NC_009956	GGC	2	6	53429	53434	0 %	0 %	66.67 %	33.33 %	Non-Coding
40	NC_009956	CAG	2	6	53441	53446	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
41	NC_009956	CGC	2	6	53471	53476	0 %	0 %	33.33 %	66.67 %	Non-Coding
42	NC_009956	GAC	2	6	53645	53650	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
43	NC_009956	GCG	2	6	53710	53715	0 %	0 %	66.67 %	33.33 %	Non-Coding
44	NC_009956	GCC	3	9	53751	53759	0 %	0 %	33.33 %	66.67 %	Non-Coding
45	NC_009956	CAT	2	6	53861	53866	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
46	NC_009956	CCG	3	9	53908	53916	0 %	0 %	33.33 %	66.67 %	Non-Coding
47	NC_009956	CGC	2	6	53943	53948	0 %	0 %	33.33 %	66.67 %	Non-Coding
48	NC_009956	CGC	2	6	53957	53962	0 %	0 %	33.33 %	66.67 %	Non-Coding
49	NC_009956	CAT	2	6	54035	54040	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
50	NC_009956	CCT	2	6	54043	54048	0 %	33.33 %	0 %	66.67 %	Non-Coding
51	NC_009956	CTT	2	6	54113	54118	0 %	66.67 %	0 %	33.33 %	Non-Coding
52	NC_009956	GAC	2	6	54153	54158	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
53	NC_009956	CAT	2	6	54167	54172	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
54	NC_009956	CGC	2	6	54224	54229	0 %	0 %	33.33 %	66.67 %	Non-Coding
55	NC_009956	CAC	2	6	54278	54283	33.33 %	0 %	0 %	66.67 %	Non-Coding
56	NC_009956	TGA	2	6	54394	54399	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
57	NC_009956	GCC	2	6	54633	54638	0 %	0 %	33.33 %	66.67 %	Non-Coding
58	NC_009956	GGA	2	6	54650	54655	33.33 %	0 %	66.67 %	0 %	Non-Coding
59	NC_009956	GCC	2	6	55840	55845	0 %	0 %	33.33 %	66.67 %	Non-Coding
60	NC_009956	TCC	2	6	56595	56600	0 %	33.33 %	0 %	66.67 %	Non-Coding
61	NC_009956	GGC	2	6	56987	56992	0 %	0 %	66.67 %	33.33 %	Non-Coding
62	NC_009956	GGC	3	9	57012	57020	0 %	0 %	66.67 %	33.33 %	Non-Coding
63	NC_009956	CAC	2	6	59274	59279	33.33 %	0 %	0 %	66.67 %	Non-Coding
64	NC_009956	CCA	2	6	60508	60513	33.33 %	0 %	0 %	66.67 %	Non-Coding
65	NC_009956	GTG	2	6	60663	60668	0 %	33.33 %	66.67 %	0 %	Non-Coding
66	NC_009956	CGG	2	6	62145	62150	0 %	0 %	66.67 %	33.33 %	Non-Coding
67	NC_009956	TGG	2	6	62160	62165	0 %	33.33 %	66.67 %	0 %	Non-Coding
68	NC_009956	GCC	2	6	63595	63600	0 %	0 %	33.33 %	66.67 %	Non-Coding
69	NC_009956	CGG	2	6	63637	63642	0 %	0 %	66.67 %	33.33 %	Non-Coding
70	NC_009956	GCA	2	6	63680	63685	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
71	NC_009956	AGA	2	6	63720	63725	66.67 %	0 %	33.33 %	0 %	Non-Coding
72	NC_009956	GGC	2	6	63758	63763	0 %	0 %	66.67 %	33.33 %	Non-Coding
73	NC_009956	CTT	2	6	65898	65903	0 %	66.67 %	0 %	33.33 %	Non-Coding
74	NC_009956	GGC	2	6	69489	69494	0 %	0 %	66.67 %	33.33 %	Non-Coding
75	NC_009956	TCC	2	6	75798	75803	0 %	33.33 %	0 %	66.67 %	Non-Coding
76	NC_009956	CCG	2	6	75818	75823	0 %	0 %	33.33 %	66.67 %	Non-Coding
77	NC_009956	TGC	2	6	81914	81919	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
78	NC_009956	GCC	2	6	83299	83304	0 %	0 %	33.33 %	66.67 %	Non-Coding
79	NC_009956	GCA	2	6	84418	84423	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
80	NC_009956	CGG	2	6	84538	84543	0 %	0 %	66.67 %	33.33 %	Non-Coding
81	NC_009956	CTG	2	6	84640	84645	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
82	NC_009956	CCG	2	6	88269	88274	0 %	0 %	33.33 %	66.67 %	Non-Coding
83	NC_009956	CAA	2	6	97883	97888	66.67 %	0 %	0 %	33.33 %	Non-Coding
84	NC_009956	TGG	2	6	97890	97895	0 %	33.33 %	66.67 %	0 %	Non-Coding
85	NC_009956	TGC	2	6	97911	97916	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
86	NC_009956	CAG	2	6	98047	98052	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
87	NC_009956	CGA	2	6	98156	98161	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
88	NC_009956	CGG	2	6	98265	98270	0 %	0 %	66.67 %	33.33 %	Non-Coding
89	NC_009956	CGC	2	6	100213	100218	0 %	0 %	33.33 %	66.67 %	Non-Coding
90	NC_009956	GGC	2	6	100231	100236	0 %	0 %	66.67 %	33.33 %	Non-Coding
91	NC_009956	CAA	2	6	100284	100289	66.67 %	0 %	0 %	33.33 %	Non-Coding
92	NC_009956	CGC	2	6	100329	100334	0 %	0 %	33.33 %	66.67 %	Non-Coding
93	NC_009956	GTT	2	6	100361	100366	0 %	66.67 %	33.33 %	0 %	Non-Coding
94	NC_009956	GCA	2	6	100412	100417	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
95	NC_009956	CAA	2	6	101972	101977	66.67 %	0 %	0 %	33.33 %	Non-Coding
96	NC_009956	GAA	2	6	102069	102074	66.67 %	0 %	33.33 %	0 %	Non-Coding
97	NC_009956	GCT	2	6	102109	102114	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
98	NC_009956	GCG	2	6	102159	102164	0 %	0 %	66.67 %	33.33 %	Non-Coding
99	NC_009956	CAC	2	6	102235	102240	33.33 %	0 %	0 %	66.67 %	Non-Coding
100	NC_009956	TTG	2	6	103129	103134	0 %	66.67 %	33.33 %	0 %	Non-Coding
101	NC_009956	GAA	2	6	103155	103160	66.67 %	0 %	33.33 %	0 %	Non-Coding
102	NC_009956	CGA	2	6	103178	103183	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
103	NC_009956	AAG	2	6	103270	103275	66.67 %	0 %	33.33 %	0 %	Non-Coding
104	NC_009956	ACT	2	6	103973	103978	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
105	NC_009956	GGA	2	6	104100	104105	33.33 %	0 %	66.67 %	0 %	Non-Coding
106	NC_009956	CGA	2	6	104253	104258	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
107	NC_009956	CGA	2	6	104471	104476	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
108	NC_009956	GGC	2	6	105975	105980	0 %	0 %	66.67 %	33.33 %	Non-Coding
109	NC_009956	GCG	2	6	108057	108062	0 %	0 %	66.67 %	33.33 %	Non-Coding
110	NC_009956	CAA	2	6	108104	108109	66.67 %	0 %	0 %	33.33 %	Non-Coding
111	NC_009956	ATC	2	6	108178	108183	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
112	NC_009956	TTC	2	6	109827	109832	0 %	66.67 %	0 %	33.33 %	Non-Coding
113	NC_009956	GCG	2	6	109842	109847	0 %	0 %	66.67 %	33.33 %	Non-Coding
114	NC_009956	TCA	2	6	109928	109933	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
115	NC_009956	GCG	2	6	109983	109988	0 %	0 %	66.67 %	33.33 %	Non-Coding
116	NC_009956	TTG	2	6	121250	121255	0 %	66.67 %	33.33 %	0 %	Non-Coding
117	NC_009956	GCT	2	6	125297	125302	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
118	NC_009956	CGC	2	6	130553	130558	0 %	0 %	33.33 %	66.67 %	Non-Coding
119	NC_009956	GCA	2	6	132221	132226	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
120	NC_009956	TCT	2	6	132367	132372	0 %	66.67 %	0 %	33.33 %	Non-Coding
121	NC_009956	GAT	2	6	132487	132492	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
122	NC_009956	GCC	2	6	132609	132614	0 %	0 %	33.33 %	66.67 %	Non-Coding
123	NC_009956	CGA	2	6	132664	132669	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
124	NC_009956	TGC	2	6	132722	132727	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
125	NC_009956	TCG	2	6	132811	132816	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
126	NC_009956	TGA	2	6	135623	135628	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
127	NC_009956	GAA	2	6	135662	135667	66.67 %	0 %	33.33 %	0 %	Non-Coding
128	NC_009956	GGC	2	6	136921	136926	0 %	0 %	66.67 %	33.33 %	Non-Coding
129	NC_009956	GAA	2	6	138421	138426	66.67 %	0 %	33.33 %	0 %	Non-Coding
130	NC_009956	CCG	2	6	138463	138468	0 %	0 %	33.33 %	66.67 %	Non-Coding
131	NC_009956	GCT	2	6	138960	138965	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
132	NC_009956	TGC	2	6	138978	138983	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
133	NC_009956	CGG	2	6	140588	140593	0 %	0 %	66.67 %	33.33 %	Non-Coding
134	NC_009956	CGC	2	6	140665	140670	0 %	0 %	33.33 %	66.67 %	Non-Coding
135	NC_009956	CTC	2	6	141268	141273	0 %	33.33 %	0 %	66.67 %	Non-Coding
136	NC_009956	CTG	2	6	141410	141415	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
137	NC_009956	AAC	2	6	144324	144329	66.67 %	0 %	0 %	33.33 %	Non-Coding
138	NC_009956	ACC	2	6	144919	144924	33.33 %	0 %	0 %	66.67 %	Non-Coding
139	NC_009956	TTG	2	6	145499	145504	0 %	66.67 %	33.33 %	0 %	Non-Coding
140	NC_009956	CTG	2	6	145615	145620	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
141	NC_009956	TTG	2	6	145642	145647	0 %	66.67 %	33.33 %	0 %	Non-Coding
142	NC_009956	AGG	2	6	145787	145792	33.33 %	0 %	66.67 %	0 %	Non-Coding
143	NC_009956	AGG	2	6	146179	146184	33.33 %	0 %	66.67 %	0 %	Non-Coding
144	NC_009956	CGA	2	6	146258	146263	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
145	NC_009956	GGC	2	6	146510	146515	0 %	0 %	66.67 %	33.33 %	Non-Coding
146	NC_009956	AAC	2	6	146904	146909	66.67 %	0 %	0 %	33.33 %	Non-Coding
147	NC_009956	GAT	2	6	147262	147267	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
148	NC_009956	TGT	2	6	148565	148570	0 %	66.67 %	33.33 %	0 %	Non-Coding
149	NC_009956	GTT	2	6	148606	148611	0 %	66.67 %	33.33 %	0 %	Non-Coding
150	NC_009956	CCG	2	6	150339	150344	0 %	0 %	33.33 %	66.67 %	Non-Coding
151	NC_009956	CGC	2	6	150822	150827	0 %	0 %	33.33 %	66.67 %	Non-Coding
152	NC_009956	TGC	2	6	150887	150892	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
153	NC_009956	TCC	2	6	151882	151887	0 %	33.33 %	0 %	66.67 %	Non-Coding
154	NC_009956	AGG	2	6	151901	151906	33.33 %	0 %	66.67 %	0 %	Non-Coding
155	NC_009956	TGC	2	6	152905	152910	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
156	NC_009956	CGG	2	6	152928	152933	0 %	0 %	66.67 %	33.33 %	Non-Coding
157	NC_009956	GCA	2	6	152943	152948	33.33 %	0 %	33.33 %	33.33 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.