MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis strain F/1-93

Total Repeats: 40

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_022117	GAAGGA	2	12	760	771	50 %	0 %	50 %	0 %	Non-Coding
2	NC_022117	CAAAAA	2	12	6251	6262	83.33 %	0 %	0 %	16.67 %	Non-Coding
3	NC_022117	AAAATT	2	12	54189	54200	66.67 %	33.33 %	0 %	0 %	Non-Coding
4	NC_022117	AAAAAT	2	12	60999	61010	83.33 %	16.67 %	0 %	0 %	Non-Coding
5	NC_022117	ATCTAG	2	12	76722	76733	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
6	NC_022117	TTTTAG	2	12	116001	116012	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
7	NC_022117	TAAAAA	2	12	120597	120608	83.33 %	16.67 %	0 %	0 %	Non-Coding
8	NC_022117	TTGGTA	2	12	120645	120656	16.67 %	50 %	33.33 %	0 %	Non-Coding
9	NC_022117	AGGATC	2	12	121024	121035	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
10	NC_022117	GGGTTT	2	12	123751	123762	0 %	50 %	50 %	0 %	Non-Coding
11	NC_022117	TTGCAT	2	12	124033	124044	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
12	NC_022117	AAGAGA	2	12	124402	124413	66.67 %	0 %	33.33 %	0 %	Non-Coding
13	NC_022117	AGAAAA	2	12	182165	182176	83.33 %	0 %	16.67 %	0 %	Non-Coding
14	NC_022117	AAACAT	2	12	193011	193022	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
15	NC_022117	AACCCT	2	12	254616	254627	33.33 %	16.67 %	0 %	50 %	Non-Coding
16	NC_022117	CCTGCA	2	12	255581	255592	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
17	NC_022117	ATATTA	2	12	279417	279428	50 %	50 %	0 %	0 %	Non-Coding
18	NC_022117	AGAATA	2	12	361075	361086	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
19	NC_022117	TTCTTA	2	12	361095	361106	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
20	NC_022117	TTCTTT	2	12	492299	492310	0 %	83.33 %	0 %	16.67 %	Non-Coding
21	NC_022117	TAACTA	2	12	502782	502793	50 %	33.33 %	0 %	16.67 %	Non-Coding
22	NC_022117	AAGAAA	2	12	502795	502806	83.33 %	0 %	16.67 %	0 %	Non-Coding
23	NC_022117	AACTAA	2	12	514437	514448	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
24	NC_022117	TCTCTA	2	12	516523	516534	16.67 %	50 %	0 %	33.33 %	Non-Coding
25	NC_022117	AAAGAA	2	12	541259	541270	83.33 %	0 %	16.67 %	0 %	Non-Coding
26	NC_022117	AAAAAT	2	12	566295	566306	83.33 %	16.67 %	0 %	0 %	Non-Coding
27	NC_022117	TAGGGG	2	12	605447	605458	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
28	NC_022117	TCTTTT	2	12	617432	617443	0 %	83.33 %	0 %	16.67 %	Non-Coding
29	NC_022117	TTAAAT	2	12	645605	645616	50 %	50 %	0 %	0 %	Non-Coding
30	NC_022117	TTATTT	2	12	648644	648655	16.67 %	83.33 %	0 %	0 %	Non-Coding
31	NC_022117	CCGCAA	2	12	698191	698202	33.33 %	0 %	16.67 %	50 %	Non-Coding
32	NC_022117	GGGAAG	2	12	758699	758710	33.33 %	0 %	66.67 %	0 %	Non-Coding
33	NC_022117	TTTTCT	2	12	804477	804488	0 %	83.33 %	0 %	16.67 %	Non-Coding
34	NC_022117	ATTTTT	2	12	834730	834741	16.67 %	83.33 %	0 %	0 %	Non-Coding
35	NC_022117	TAAGGA	2	12	855694	855705	50 %	16.67 %	33.33 %	0 %	Non-Coding
36	NC_022117	CCGGAG	2	12	856612	856623	16.67 %	0 %	50 %	33.33 %	Non-Coding
37	NC_022117	TAAGGA	2	12	877744	877755	50 %	16.67 %	33.33 %	0 %	Non-Coding
38	NC_022117	CCGGAG	2	12	878662	878673	16.67 %	0 %	50 %	33.33 %	Non-Coding
39	NC_022117	GAAAAA	2	12	1028494	1028505	83.33 %	0 %	16.67 %	0 %	Non-Coding
40	NC_022117	TAAAAT	2	12	1041853	1041864	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.