MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis L3/404/LN complete genome

Total Repeats: 35

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020974	CAAAAA	2	12	6849	6860	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020974	AAAAAT	2	12	61543	61554	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020974	ATCTAG	2	12	77254	77265	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020974	TTTTAG	2	12	116536	116547	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020974	TAAAAA	2	12	121208	121219	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020974	AGAAAA	2	12	183361	183372	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_020974	TATGAA	3	18	192307	192324	50 %	33.33 %	16.67 %	0 %	Non-Coding
8	NC_020974	TTTTAC	2	12	217627	217638	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
9	NC_020974	TTTTTA	2	12	252159	252170	16.67 %	83.33 %	0 %	0 %	Non-Coding
10	NC_020974	AGGAGA	2	12	267259	267270	50 %	0 %	50 %	0 %	Non-Coding
11	NC_020974	ATATTA	2	12	276155	276166	50 %	50 %	0 %	0 %	Non-Coding
12	NC_020974	AAAAAG	2	12	320326	320337	83.33 %	0 %	16.67 %	0 %	Non-Coding
13	NC_020974	AGAATA	2	12	357809	357820	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
14	NC_020974	ACATCA	2	12	423236	423247	50 %	16.67 %	0 %	33.33 %	Non-Coding
15	NC_020974	TAACTA	2	12	499469	499480	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_020974	AAGAAA	2	12	499482	499493	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_020974	AGAATA	2	12	505457	505468	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_020974	AACTAA	2	12	511189	511200	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19	NC_020974	TCCCTC	2	12	545668	545679	0 %	33.33 %	0 %	66.67 %	Non-Coding
20	NC_020974	AAAAAT	2	12	563638	563649	83.33 %	16.67 %	0 %	0 %	Non-Coding
21	NC_020974	TAGGGG	2	12	602806	602817	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
22	NC_020974	TCTTTT	2	12	614801	614812	0 %	83.33 %	0 %	16.67 %	Non-Coding
23	NC_020974	TCTGCA	2	12	742451	742462	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
24	NC_020974	TATTTT	2	12	751928	751939	16.67 %	83.33 %	0 %	0 %	Non-Coding
25	NC_020974	GAGAAA	2	12	799416	799427	66.67 %	0 %	33.33 %	0 %	Non-Coding
26	NC_020974	TTTTCT	2	12	801874	801885	0 %	83.33 %	0 %	16.67 %	Non-Coding
27	NC_020974	ATTTTT	2	12	805653	805664	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_020974	TTTTTA	2	12	832133	832144	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020974	CCGGAG	2	12	854046	854057	16.67 %	0 %	50 %	33.33 %	Non-Coding
30	NC_020974	CCTCTA	2	12	867191	867202	16.67 %	33.33 %	0 %	50 %	Non-Coding
31	NC_020974	CCGGAG	2	12	876090	876101	16.67 %	0 %	50 %	33.33 %	Non-Coding
32	NC_020974	GACGGC	2	12	918509	918520	16.67 %	0 %	50 %	33.33 %	Non-Coding
33	NC_020974	AAACAA	2	12	920197	920208	83.33 %	0 %	0 %	16.67 %	Non-Coding
34	NC_020974	AATTTT	2	12	1039202	1039213	33.33 %	66.67 %	0 %	0 %	Non-Coding
35	NC_020974	TAAAAT	2	12	1039214	1039225	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.