MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis Ia/SotonIa1 complete genome

Total Repeats: 38

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020970	CAAAAA	2	12	6852	6863	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020970	AAAAAT	2	12	61457	61468	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020970	ATCTAG	2	12	77186	77197	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020970	TTTTAG	2	12	116458	116469	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020970	TAAAAA	2	12	121053	121064	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020970	AGAAAA	2	12	183083	183094	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_020970	TATGAA	2	12	195858	195869	50 %	33.33 %	16.67 %	0 %	Non-Coding
8	NC_020970	TTTTAC	2	12	221868	221879	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
9	NC_020970	AACCCT	2	12	255583	255594	33.33 %	16.67 %	0 %	50 %	Non-Coding
10	NC_020970	ATTTTT	2	12	256387	256398	16.67 %	83.33 %	0 %	0 %	Non-Coding
11	NC_020970	AGGAGA	2	12	271489	271500	50 %	0 %	50 %	0 %	Non-Coding
12	NC_020970	ATATTA	2	12	280387	280398	50 %	50 %	0 %	0 %	Non-Coding
13	NC_020970	AAAAAG	2	12	324542	324553	83.33 %	0 %	16.67 %	0 %	Non-Coding
14	NC_020970	AGAATA	2	12	362035	362046	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
15	NC_020970	TAACTA	2	12	503559	503570	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_020970	AAGAAA	2	12	503572	503583	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_020970	AGAATA	2	12	509547	509558	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_020970	AACTAA	2	12	515280	515291	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19	NC_020970	TCCCTC	2	12	548996	549007	0 %	33.33 %	0 %	66.67 %	Non-Coding
20	NC_020970	AAAAAT	2	12	566971	566982	83.33 %	16.67 %	0 %	0 %	Non-Coding
21	NC_020970	TAGGGG	2	12	606139	606150	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
22	NC_020970	TCTTTT	2	12	618133	618144	0 %	83.33 %	0 %	16.67 %	Non-Coding
23	NC_020970	TTATTT	2	12	649344	649355	16.67 %	83.33 %	0 %	0 %	Non-Coding
24	NC_020970	TCTGCA	2	12	745813	745824	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
25	NC_020970	TATTTT	2	12	755291	755302	16.67 %	83.33 %	0 %	0 %	Non-Coding
26	NC_020970	GAGAAA	2	12	802757	802768	66.67 %	0 %	33.33 %	0 %	Non-Coding
27	NC_020970	TTTTCT	2	12	805215	805226	0 %	83.33 %	0 %	16.67 %	Non-Coding
28	NC_020970	ATTTTT	2	12	808994	809005	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020970	TTTTTA	2	12	835432	835443	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_020970	TAAGGA	2	12	856395	856406	50 %	16.67 %	33.33 %	0 %	Non-Coding
31	NC_020970	CCGGAG	2	12	857313	857324	16.67 %	0 %	50 %	33.33 %	Non-Coding
32	NC_020970	CCTCTA	2	12	870459	870470	16.67 %	33.33 %	0 %	50 %	Non-Coding
33	NC_020970	TAAGGA	2	12	878441	878452	50 %	16.67 %	33.33 %	0 %	Non-Coding
34	NC_020970	CCGGAG	2	12	879359	879370	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_020970	GACGGC	2	12	921789	921800	16.67 %	0 %	50 %	33.33 %	Non-Coding
36	NC_020970	AAACAA	2	12	923477	923488	83.33 %	0 %	0 %	16.67 %	Non-Coding
37	NC_020970	ATTTTT	2	12	1038964	1038975	16.67 %	83.33 %	0 %	0 %	Non-Coding
38	NC_020970	TAAAAT	2	12	1042587	1042598	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.