MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis A/363 complete genome

Total Repeats: 39

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020966	CAAAAA	2	12	6846	6857	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020966	AAAAAT	2	12	61433	61444	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020966	ATCTAG	2	12	77156	77167	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020966	TTTTAG	2	12	116420	116431	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020966	TAAAAA	2	12	121017	121028	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020966	AGGATC	2	12	121444	121455	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
7	NC_020966	AGAAAA	2	12	183208	183219	83.33 %	0 %	16.67 %	0 %	Non-Coding
8	NC_020966	TATGAA	2	12	196978	196989	50 %	33.33 %	16.67 %	0 %	Non-Coding
9	NC_020966	TTTTAC	2	12	222987	222998	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
10	NC_020966	AACCCT	2	12	256701	256712	33.33 %	16.67 %	0 %	50 %	Non-Coding
11	NC_020966	TTTTTA	2	12	257497	257508	16.67 %	83.33 %	0 %	0 %	Non-Coding
12	NC_020966	AGGAGA	2	12	272598	272609	50 %	0 %	50 %	0 %	Non-Coding
13	NC_020966	ATATTA	2	12	281496	281507	50 %	50 %	0 %	0 %	Non-Coding
14	NC_020966	AAAAAG	2	12	325652	325663	83.33 %	0 %	16.67 %	0 %	Non-Coding
15	NC_020966	AGAATA	2	12	363127	363138	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
16	NC_020966	TAACTA	2	12	504852	504863	50 %	33.33 %	0 %	16.67 %	Non-Coding
17	NC_020966	AAGAAA	2	12	504865	504876	83.33 %	0 %	16.67 %	0 %	Non-Coding
18	NC_020966	AGAATA	2	12	510840	510851	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
19	NC_020966	AACTAA	2	12	516577	516588	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
20	NC_020966	TCCCTC	2	12	550593	550604	0 %	33.33 %	0 %	66.67 %	Non-Coding
21	NC_020966	AAAAAT	2	12	568566	568577	83.33 %	16.67 %	0 %	0 %	Non-Coding
22	NC_020966	TAGGGG	2	12	607729	607740	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
23	NC_020966	TCTTTT	2	12	619725	619736	0 %	83.33 %	0 %	16.67 %	Non-Coding
24	NC_020966	TTATTT	2	12	650936	650947	16.67 %	83.33 %	0 %	0 %	Non-Coding
25	NC_020966	TCTGCA	2	12	747410	747421	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
26	NC_020966	TATTTT	2	12	756888	756899	16.67 %	83.33 %	0 %	0 %	Non-Coding
27	NC_020966	GAGAAA	2	12	804339	804350	66.67 %	0 %	33.33 %	0 %	Non-Coding
28	NC_020966	TTTTCT	2	12	806797	806808	0 %	83.33 %	0 %	16.67 %	Non-Coding
29	NC_020966	ATTTTT	2	12	810576	810587	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_020966	TTTTTA	2	12	837014	837025	16.67 %	83.33 %	0 %	0 %	Non-Coding
31	NC_020966	TAAGGA	2	12	857977	857988	50 %	16.67 %	33.33 %	0 %	Non-Coding
32	NC_020966	CCGGAG	2	12	858895	858906	16.67 %	0 %	50 %	33.33 %	Non-Coding
33	NC_020966	CCTCTA	2	12	872041	872052	16.67 %	33.33 %	0 %	50 %	Non-Coding
34	NC_020966	TAAGGA	2	12	880024	880035	50 %	16.67 %	33.33 %	0 %	Non-Coding
35	NC_020966	CCGGAG	2	12	880942	880953	16.67 %	0 %	50 %	33.33 %	Non-Coding
36	NC_020966	GACGGC	2	12	923371	923382	16.67 %	0 %	50 %	33.33 %	Non-Coding
37	NC_020966	AAACAA	2	12	925059	925070	83.33 %	0 %	0 %	16.67 %	Non-Coding
38	NC_020966	ATTTTT	2	12	1040428	1040439	16.67 %	83.33 %	0 %	0 %	Non-Coding
39	NC_020966	TAAAAT	2	12	1043983	1043994	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.