MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis F/SotonF3 high quality draft genome sequence

Total Repeats: 37

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020964	CAAAAA	2	12	6850	6861	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020964	AAAATT	2	12	54683	54694	66.67 %	33.33 %	0 %	0 %	Non-Coding
3	NC_020964	AAAAAT	2	12	61493	61504	83.33 %	16.67 %	0 %	0 %	Non-Coding
4	NC_020964	ATCTAG	2	12	77216	77227	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
5	NC_020964	TTTTAG	2	12	116488	116499	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
6	NC_020964	TAAAAA	2	12	121084	121095	83.33 %	16.67 %	0 %	0 %	Non-Coding
7	NC_020964	AGAAAA	2	12	182708	182719	83.33 %	0 %	16.67 %	0 %	Non-Coding
8	NC_020964	TATGAA	2	12	195522	195533	50 %	33.33 %	16.67 %	0 %	Non-Coding
9	NC_020964	TTTTAC	2	12	221497	221508	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
10	NC_020964	AACCCT	2	12	255210	255221	33.33 %	16.67 %	0 %	50 %	Non-Coding
11	NC_020964	ATTTTT	2	12	256014	256025	16.67 %	83.33 %	0 %	0 %	Non-Coding
12	NC_020964	AGGAGA	2	12	271113	271124	50 %	0 %	50 %	0 %	Non-Coding
13	NC_020964	ATATTA	2	12	280011	280022	50 %	50 %	0 %	0 %	Non-Coding
14	NC_020964	AAAAAT	2	12	322361	322372	83.33 %	16.67 %	0 %	0 %	Non-Coding
15	NC_020964	AAAAAG	2	12	324179	324190	83.33 %	0 %	16.67 %	0 %	Non-Coding
16	NC_020964	AGAATA	2	12	361683	361694	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
17	NC_020964	TAACTA	2	12	503399	503410	50 %	33.33 %	0 %	16.67 %	Non-Coding
18	NC_020964	AAGAAA	2	12	503412	503423	83.33 %	0 %	16.67 %	0 %	Non-Coding
19	NC_020964	AGAATA	2	12	509387	509398	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
20	NC_020964	AACTAA	2	12	515124	515135	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
21	NC_020964	TCCCTC	2	12	549166	549177	0 %	33.33 %	0 %	66.67 %	Non-Coding
22	NC_020964	AAAAAT	2	12	567138	567149	83.33 %	16.67 %	0 %	0 %	Non-Coding
23	NC_020964	TAGGGG	2	12	606290	606301	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
24	NC_020964	TCTTTT	2	12	618275	618286	0 %	83.33 %	0 %	16.67 %	Non-Coding
25	NC_020964	TTATTT	2	12	649487	649498	16.67 %	83.33 %	0 %	0 %	Non-Coding
26	NC_020964	TATTTT	2	12	755433	755444	16.67 %	83.33 %	0 %	0 %	Non-Coding
27	NC_020964	TTTTCT	2	12	805332	805343	0 %	83.33 %	0 %	16.67 %	Non-Coding
28	NC_020964	ATTTTT	2	12	809111	809122	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020964	ATTTTT	2	12	835590	835601	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_020964	TAAGGA	2	12	856554	856565	50 %	16.67 %	33.33 %	0 %	Non-Coding
31	NC_020964	CCGGAG	2	12	857472	857483	16.67 %	0 %	50 %	33.33 %	Non-Coding
32	NC_020964	CCTCTA	2	12	870623	870634	16.67 %	33.33 %	0 %	50 %	Non-Coding
33	NC_020964	TAAGGA	2	12	878605	878616	50 %	16.67 %	33.33 %	0 %	Non-Coding
34	NC_020964	CCGGAG	2	12	879523	879534	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_020964	GACGGC	2	12	921947	921958	16.67 %	0 %	50 %	33.33 %	Non-Coding
36	NC_020964	AAACAA	2	12	923635	923646	83.33 %	0 %	0 %	16.67 %	Non-Coding
37	NC_020964	TAAAAT	2	12	1042746	1042757	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.