MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis D/SotonD5 complete genome

Total Repeats: 40

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020943	CAAAAA	2	12	6852	6863	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020943	AAAAAT	2	12	61197	61208	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020943	ATCTAG	2	12	76926	76937	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020943	TTTTAG	2	12	116197	116208	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020943	TAAAAA	2	12	120793	120804	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020943	AGAAAA	2	12	182416	182427	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_020943	TATGAA	2	12	195229	195240	50 %	33.33 %	16.67 %	0 %	Non-Coding
8	NC_020943	TTTTAC	2	12	221243	221254	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
9	NC_020943	AACCCT	2	12	254960	254971	33.33 %	16.67 %	0 %	50 %	Non-Coding
10	NC_020943	ATTTTT	2	12	255755	255766	16.67 %	83.33 %	0 %	0 %	Non-Coding
11	NC_020943	AGGAGA	2	12	270857	270868	50 %	0 %	50 %	0 %	Non-Coding
12	NC_020943	ATATTA	2	12	279755	279766	50 %	50 %	0 %	0 %	Non-Coding
13	NC_020943	AAAAAG	2	12	323916	323927	83.33 %	0 %	16.67 %	0 %	Non-Coding
14	NC_020943	AGAATA	2	12	361409	361420	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
15	NC_020943	TAACTA	2	12	502976	502987	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_020943	AAGAAA	2	12	502989	503000	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_020943	AGAATA	2	12	508964	508975	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_020943	AACTAA	2	12	514697	514708	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19	NC_020943	AAATAA	2	12	531214	531225	83.33 %	16.67 %	0 %	0 %	Non-Coding
20	NC_020943	AGCCAC	2	12	531558	531569	33.33 %	0 %	16.67 %	50 %	Non-Coding
21	NC_020943	TCCCTC	2	12	548545	548556	0 %	33.33 %	0 %	66.67 %	Non-Coding
22	NC_020943	AAAAAT	2	12	566518	566529	83.33 %	16.67 %	0 %	0 %	Non-Coding
23	NC_020943	TAGGGG	2	12	605685	605696	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
24	NC_020943	TCTTTT	2	12	617680	617691	0 %	83.33 %	0 %	16.67 %	Non-Coding
25	NC_020943	TTATTT	2	12	648889	648900	16.67 %	83.33 %	0 %	0 %	Non-Coding
26	NC_020943	TCTGCA	3	18	745345	745362	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
27	NC_020943	TATTTT	2	12	754827	754838	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_020943	GAGAAA	2	12	802275	802286	66.67 %	0 %	33.33 %	0 %	Non-Coding
29	NC_020943	TTTTCT	2	12	804733	804744	0 %	83.33 %	0 %	16.67 %	Non-Coding
30	NC_020943	ATTTTT	2	12	808512	808523	16.67 %	83.33 %	0 %	0 %	Non-Coding
31	NC_020943	TTTTTA	2	12	834950	834961	16.67 %	83.33 %	0 %	0 %	Non-Coding
32	NC_020943	TAAGGA	2	12	855904	855915	50 %	16.67 %	33.33 %	0 %	Non-Coding
33	NC_020943	CCGGAG	2	12	856822	856833	16.67 %	0 %	50 %	33.33 %	Non-Coding
34	NC_020943	CCTCTA	2	12	869967	869978	16.67 %	33.33 %	0 %	50 %	Non-Coding
35	NC_020943	TAAGGA	2	12	877944	877955	50 %	16.67 %	33.33 %	0 %	Non-Coding
36	NC_020943	CCGGAG	2	12	878862	878873	16.67 %	0 %	50 %	33.33 %	Non-Coding
37	NC_020943	GACGGC	2	12	921291	921302	16.67 %	0 %	50 %	33.33 %	Non-Coding
38	NC_020943	AAACAA	2	12	922979	922990	83.33 %	0 %	0 %	16.67 %	Non-Coding
39	NC_020943	ATTTTT	2	12	1038474	1038485	16.67 %	83.33 %	0 %	0 %	Non-Coding
40	NC_020943	TAAAAT	2	12	1042097	1042108	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.