MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis G/SotonG1 complete genome

Total Repeats: 38

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020941	CAAAAA	2	12	6852	6863	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020941	AAAAAT	2	12	61306	61317	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020941	ATCTAG	2	12	77035	77046	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020941	TTTTAG	2	12	116306	116317	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020941	TAAAAA	2	12	120902	120913	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020941	AGAAAA	2	12	182525	182536	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_020941	TATGAA	2	12	195340	195351	50 %	33.33 %	16.67 %	0 %	Non-Coding
8	NC_020941	TTTTAC	2	12	221355	221366	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
9	NC_020941	AACCCT	2	12	255072	255083	33.33 %	16.67 %	0 %	50 %	Non-Coding
10	NC_020941	ATTTTT	2	12	255867	255878	16.67 %	83.33 %	0 %	0 %	Non-Coding
11	NC_020941	AGGAGA	2	12	270969	270980	50 %	0 %	50 %	0 %	Non-Coding
12	NC_020941	ATATTA	2	12	279867	279878	50 %	50 %	0 %	0 %	Non-Coding
13	NC_020941	AAAAAG	2	12	324025	324036	83.33 %	0 %	16.67 %	0 %	Non-Coding
14	NC_020941	AGAATA	2	12	361500	361511	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
15	NC_020941	TAACTA	2	12	503076	503087	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_020941	AAGAAA	2	12	503089	503100	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_020941	AGAATA	2	12	509064	509075	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_020941	AACTAA	2	12	514797	514808	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19	NC_020941	AGCCAC	2	12	531658	531669	33.33 %	0 %	16.67 %	50 %	Non-Coding
20	NC_020941	TCCCTC	2	12	548644	548655	0 %	33.33 %	0 %	66.67 %	Non-Coding
21	NC_020941	AAAAAT	2	12	566617	566628	83.33 %	16.67 %	0 %	0 %	Non-Coding
22	NC_020941	TAGGGG	2	12	605783	605794	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
23	NC_020941	TCTTTT	2	12	617778	617789	0 %	83.33 %	0 %	16.67 %	Non-Coding
24	NC_020941	TTATTT	2	12	648987	648998	16.67 %	83.33 %	0 %	0 %	Non-Coding
25	NC_020941	TCTGCA	2	12	745443	745454	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
26	NC_020941	TATTTT	2	12	754919	754930	16.67 %	83.33 %	0 %	0 %	Non-Coding
27	NC_020941	GAGAAA	2	12	802375	802386	66.67 %	0 %	33.33 %	0 %	Non-Coding
28	NC_020941	TTTTCT	2	12	804833	804844	0 %	83.33 %	0 %	16.67 %	Non-Coding
29	NC_020941	ATTTTT	2	12	808612	808623	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_020941	TTTTTA	2	12	835050	835061	16.67 %	83.33 %	0 %	0 %	Non-Coding
31	NC_020941	TAAGGA	2	12	856013	856024	50 %	16.67 %	33.33 %	0 %	Non-Coding
32	NC_020941	CCGGAG	2	12	856931	856942	16.67 %	0 %	50 %	33.33 %	Non-Coding
33	NC_020941	CCTCTA	2	12	870076	870087	16.67 %	33.33 %	0 %	50 %	Non-Coding
34	NC_020941	TAAGGA	2	12	878058	878069	50 %	16.67 %	33.33 %	0 %	Non-Coding
35	NC_020941	CCGGAG	2	12	878976	878987	16.67 %	0 %	50 %	33.33 %	Non-Coding
36	NC_020941	GACGGC	2	12	921405	921416	16.67 %	0 %	50 %	33.33 %	Non-Coding
37	NC_020941	AAACAA	2	12	923093	923104	83.33 %	0 %	0 %	16.67 %	Non-Coding
38	NC_020941	ATTTTT	2	12	1038588	1038599	16.67 %	83.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.