MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis Ia/SotonIa3 complete genome

Total Repeats: 38

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020940	CAAAAA	2	12	6852	6863	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020940	AAAAAT	2	12	61457	61468	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020940	ATCTAG	2	12	77186	77197	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020940	TTTTAG	2	12	116458	116469	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020940	TAAAAA	2	12	121053	121064	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020940	AGAAAA	2	12	183083	183094	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_020940	TATGAA	2	12	195858	195869	50 %	33.33 %	16.67 %	0 %	Non-Coding
8	NC_020940	TTTTAC	2	12	221868	221879	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
9	NC_020940	AACCCT	2	12	255583	255594	33.33 %	16.67 %	0 %	50 %	Non-Coding
10	NC_020940	ATTTTT	2	12	256387	256398	16.67 %	83.33 %	0 %	0 %	Non-Coding
11	NC_020940	AGGAGA	2	12	271489	271500	50 %	0 %	50 %	0 %	Non-Coding
12	NC_020940	ATATTA	2	12	280387	280398	50 %	50 %	0 %	0 %	Non-Coding
13	NC_020940	AAAAAG	2	12	324542	324553	83.33 %	0 %	16.67 %	0 %	Non-Coding
14	NC_020940	AGAATA	2	12	362035	362046	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
15	NC_020940	TAACTA	2	12	503559	503570	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_020940	AAGAAA	2	12	503572	503583	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_020940	AGAATA	2	12	509547	509558	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_020940	AACTAA	2	12	515280	515291	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19	NC_020940	TCCCTC	2	12	549149	549160	0 %	33.33 %	0 %	66.67 %	Non-Coding
20	NC_020940	AAAAAT	2	12	567124	567135	83.33 %	16.67 %	0 %	0 %	Non-Coding
21	NC_020940	TAGGGG	2	12	606292	606303	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
22	NC_020940	TCTTTT	2	12	618286	618297	0 %	83.33 %	0 %	16.67 %	Non-Coding
23	NC_020940	TTATTT	2	12	649497	649508	16.67 %	83.33 %	0 %	0 %	Non-Coding
24	NC_020940	TCTGCA	2	12	745966	745977	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
25	NC_020940	TATTTT	2	12	755444	755455	16.67 %	83.33 %	0 %	0 %	Non-Coding
26	NC_020940	GAGAAA	2	12	802910	802921	66.67 %	0 %	33.33 %	0 %	Non-Coding
27	NC_020940	TTTTCT	2	12	805368	805379	0 %	83.33 %	0 %	16.67 %	Non-Coding
28	NC_020940	ATTTTT	2	12	809147	809158	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020940	TTTTTA	2	12	835585	835596	16.67 %	83.33 %	0 %	0 %	Non-Coding
30	NC_020940	TAAGGA	2	12	856548	856559	50 %	16.67 %	33.33 %	0 %	Non-Coding
31	NC_020940	CCGGAG	2	12	857466	857477	16.67 %	0 %	50 %	33.33 %	Non-Coding
32	NC_020940	CCTCTA	2	12	870612	870623	16.67 %	33.33 %	0 %	50 %	Non-Coding
33	NC_020940	TAAGGA	2	12	878594	878605	50 %	16.67 %	33.33 %	0 %	Non-Coding
34	NC_020940	CCGGAG	2	12	879512	879523	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_020940	GACGGC	2	12	921942	921953	16.67 %	0 %	50 %	33.33 %	Non-Coding
36	NC_020940	AAACAA	2	12	923630	923641	83.33 %	0 %	0 %	16.67 %	Non-Coding
37	NC_020940	ATTTTT	2	12	1039117	1039128	16.67 %	83.33 %	0 %	0 %	Non-Coding
38	NC_020940	TAAAAT	2	12	1042740	1042751	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.