MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis L2/25667R complete genome

Total Repeats: 37

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020930	CAAAAA	2	12	6849	6860	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020930	AAAAAT	2	12	61522	61533	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020930	ATCTAG	2	12	77233	77244	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020930	TTTTAG	2	12	116514	116525	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020930	TAAAAA	2	12	121186	121197	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020930	AGAAAA	2	12	183393	183404	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_020930	TATGAA	3	18	192327	192344	50 %	33.33 %	16.67 %	0 %	Non-Coding
8	NC_020930	TTTTAC	2	12	217649	217660	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
9	NC_020930	TTTTTA	2	12	252181	252192	16.67 %	83.33 %	0 %	0 %	Non-Coding
10	NC_020930	AGGAGA	2	12	267281	267292	50 %	0 %	50 %	0 %	Non-Coding
11	NC_020930	ATATTA	2	12	276177	276188	50 %	50 %	0 %	0 %	Non-Coding
12	NC_020930	AAAAAG	2	12	320348	320359	83.33 %	0 %	16.67 %	0 %	Non-Coding
13	NC_020930	AGAATA	2	12	357829	357840	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
14	NC_020930	ACATCA	2	12	423292	423303	50 %	16.67 %	0 %	33.33 %	Non-Coding
15	NC_020930	TAACTA	2	12	499524	499535	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_020930	AAGAAA	2	12	499537	499548	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_020930	AGAATA	2	12	505512	505523	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_020930	AACTAA	2	12	511244	511255	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19	NC_020930	TCCCTC	2	12	545268	545279	0 %	33.33 %	0 %	66.67 %	Non-Coding
20	NC_020930	AAAAAT	2	12	563238	563249	83.33 %	16.67 %	0 %	0 %	Non-Coding
21	NC_020930	TAGGGG	2	12	602403	602414	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
22	NC_020930	TCTTTT	2	12	614398	614409	0 %	83.33 %	0 %	16.67 %	Non-Coding
23	NC_020930	TCTGCA	2	12	742048	742059	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
24	NC_020930	TATTTT	2	12	751525	751536	16.67 %	83.33 %	0 %	0 %	Non-Coding
25	NC_020930	GAGAAA	2	12	798998	799009	66.67 %	0 %	33.33 %	0 %	Non-Coding
26	NC_020930	TTTTCT	2	12	801456	801467	0 %	83.33 %	0 %	16.67 %	Non-Coding
27	NC_020930	ATTTTT	2	12	805235	805246	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_020930	TTTTTA	2	12	831715	831726	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020930	TAAGGA	2	12	852711	852722	50 %	16.67 %	33.33 %	0 %	Non-Coding
30	NC_020930	CCGGAG	2	12	853629	853640	16.67 %	0 %	50 %	33.33 %	Non-Coding
31	NC_020930	CCTCTA	2	12	866774	866785	16.67 %	33.33 %	0 %	50 %	Non-Coding
32	NC_020930	TAAGGA	2	12	874755	874766	50 %	16.67 %	33.33 %	0 %	Non-Coding
33	NC_020930	CCGGAG	2	12	875673	875684	16.67 %	0 %	50 %	33.33 %	Non-Coding
34	NC_020930	GACGGC	2	12	918092	918103	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_020930	AAACAA	2	12	919780	919791	83.33 %	0 %	0 %	16.67 %	Non-Coding
36	NC_020930	AATTTT	2	12	1038784	1038795	33.33 %	66.67 %	0 %	0 %	Non-Coding
37	NC_020930	TAAAAT	2	12	1038796	1038807	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.