MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis L1/115 complete genome

Total Repeats: 35

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_020929	CAAAAA	2	12	6849	6860	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_020929	AAAAAT	2	12	61531	61542	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_020929	ATCTAG	2	12	77242	77253	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_020929	TTTTAG	2	12	116523	116534	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_020929	TAAAAA	2	12	121195	121206	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_020929	AGAAAA	2	12	183347	183358	83.33 %	0 %	16.67 %	0 %	Non-Coding
7	NC_020929	TATGAA	3	18	192282	192299	50 %	33.33 %	16.67 %	0 %	Non-Coding
8	NC_020929	TTTTAC	2	12	217602	217613	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
9	NC_020929	TTTTTA	2	12	252135	252146	16.67 %	83.33 %	0 %	0 %	Non-Coding
10	NC_020929	AGGAGA	2	12	267235	267246	50 %	0 %	50 %	0 %	Non-Coding
11	NC_020929	ATATTA	2	12	276131	276142	50 %	50 %	0 %	0 %	Non-Coding
12	NC_020929	AAAAAG	2	12	320302	320313	83.33 %	0 %	16.67 %	0 %	Non-Coding
13	NC_020929	AGAATA	2	12	357783	357794	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
14	NC_020929	ACATCA	2	12	423249	423260	50 %	16.67 %	0 %	33.33 %	Non-Coding
15	NC_020929	TAACTA	2	12	499483	499494	50 %	33.33 %	0 %	16.67 %	Non-Coding
16	NC_020929	AAGAAA	2	12	499496	499507	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_020929	AGAATA	2	12	505471	505482	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_020929	AACTAA	2	12	511203	511214	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
19	NC_020929	TCCCTC	2	12	545510	545521	0 %	33.33 %	0 %	66.67 %	Non-Coding
20	NC_020929	AAAAAT	2	12	563480	563491	83.33 %	16.67 %	0 %	0 %	Non-Coding
21	NC_020929	TAGGGG	2	12	602647	602658	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
22	NC_020929	TCTTTT	2	12	614641	614652	0 %	83.33 %	0 %	16.67 %	Non-Coding
23	NC_020929	TCTGCA	2	12	742289	742300	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
24	NC_020929	TATTTT	2	12	751766	751777	16.67 %	83.33 %	0 %	0 %	Non-Coding
25	NC_020929	GAGAAA	2	12	799244	799255	66.67 %	0 %	33.33 %	0 %	Non-Coding
26	NC_020929	TTTTCT	2	12	801702	801713	0 %	83.33 %	0 %	16.67 %	Non-Coding
27	NC_020929	ATTTTT	2	12	805481	805492	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_020929	TTTTTA	2	12	831961	831972	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_020929	CCGGAG	2	12	853874	853885	16.67 %	0 %	50 %	33.33 %	Non-Coding
30	NC_020929	CCTCTA	2	12	867019	867030	16.67 %	33.33 %	0 %	50 %	Non-Coding
31	NC_020929	CCGGAG	2	12	875918	875929	16.67 %	0 %	50 %	33.33 %	Non-Coding
32	NC_020929	GACGGC	2	12	918337	918348	16.67 %	0 %	50 %	33.33 %	Non-Coding
33	NC_020929	AAACAA	2	12	920025	920036	83.33 %	0 %	0 %	16.67 %	Non-Coding
34	NC_020929	AATTTT	2	12	1039029	1039040	33.33 %	66.67 %	0 %	0 %	Non-Coding
35	NC_020929	TAAAAT	2	12	1039041	1039052	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.