MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis E/SW3

Total Repeats: 40

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017952	CAAAAA	2	12	6852	6863	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_017952	TAGTGA	2	12	12695	12706	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
3	NC_017952	AAAATT	2	12	54776	54787	66.67 %	33.33 %	0 %	0 %	Non-Coding
4	NC_017952	AAAAAT	2	12	61586	61597	83.33 %	16.67 %	0 %	0 %	Non-Coding
5	NC_017952	ATCTAG	2	12	77309	77320	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
6	NC_017952	TTTTAG	2	12	116575	116586	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
7	NC_017952	TAAAAA	2	12	121171	121182	83.33 %	16.67 %	0 %	0 %	Non-Coding
8	NC_017952	AGAAAA	2	12	182797	182808	83.33 %	0 %	16.67 %	0 %	Non-Coding
9	NC_017952	TATGAA	2	12	195612	195623	50 %	33.33 %	16.67 %	0 %	Non-Coding
10	NC_017952	TTTTAC	2	12	221897	221908	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
11	NC_017952	AACCCT	2	12	255610	255621	33.33 %	16.67 %	0 %	50 %	Non-Coding
12	NC_017952	ATTTTT	2	12	256414	256425	16.67 %	83.33 %	0 %	0 %	Non-Coding
13	NC_017952	AGGAGA	2	12	271513	271524	50 %	0 %	50 %	0 %	Non-Coding
14	NC_017952	ATATTA	2	12	280411	280422	50 %	50 %	0 %	0 %	Non-Coding
15	NC_017952	AAAAAT	2	12	322763	322774	83.33 %	16.67 %	0 %	0 %	Non-Coding
16	NC_017952	AAAAAG	2	12	324581	324592	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_017952	AGAATA	2	12	362075	362086	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_017952	TTTTAA	2	12	410222	410233	33.33 %	66.67 %	0 %	0 %	Non-Coding
19	NC_017952	TAACTA	2	12	503799	503810	50 %	33.33 %	0 %	16.67 %	Non-Coding
20	NC_017952	AAGAAA	2	12	503812	503823	83.33 %	0 %	16.67 %	0 %	Non-Coding
21	NC_017952	AGAATA	2	12	509790	509801	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
22	NC_017952	AACTAA	2	12	515526	515537	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
23	NC_017952	TCCCTC	2	12	549263	549274	0 %	33.33 %	0 %	66.67 %	Non-Coding
24	NC_017952	AAAAAT	2	12	567235	567246	83.33 %	16.67 %	0 %	0 %	Non-Coding
25	NC_017952	TAGGGG	2	12	606388	606399	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
26	NC_017952	TCTTTT	2	12	618373	618384	0 %	83.33 %	0 %	16.67 %	Non-Coding
27	NC_017952	TTATTT	2	12	649585	649596	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_017952	TATTTT	2	12	755531	755542	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_017952	TTTTCT	2	12	805446	805457	0 %	83.33 %	0 %	16.67 %	Non-Coding
30	NC_017952	ATTTTT	2	12	809225	809236	16.67 %	83.33 %	0 %	0 %	Non-Coding
31	NC_017952	ATTTTT	2	12	835704	835715	16.67 %	83.33 %	0 %	0 %	Non-Coding
32	NC_017952	TAAGGA	2	12	856668	856679	50 %	16.67 %	33.33 %	0 %	Non-Coding
33	NC_017952	CCGGAG	2	12	857586	857597	16.67 %	0 %	50 %	33.33 %	Non-Coding
34	NC_017952	CCTCTA	2	12	870737	870748	16.67 %	33.33 %	0 %	50 %	Non-Coding
35	NC_017952	TAAGGA	2	12	878719	878730	50 %	16.67 %	33.33 %	0 %	Non-Coding
36	NC_017952	CCGGAG	2	12	879637	879648	16.67 %	0 %	50 %	33.33 %	Non-Coding
37	NC_017952	AAACAA	2	12	923749	923760	83.33 %	0 %	0 %	16.67 %	Non-Coding
38	NC_017952	ATAGGG	2	12	946332	946343	33.33 %	16.67 %	50 %	0 %	Non-Coding
39	NC_017952	ATTTTT	2	12	1039237	1039248	16.67 %	83.33 %	0 %	0 %	Non-Coding
40	NC_017952	TAAAAT	2	12	1042860	1042871	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.