MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis Sweden2

Total Repeats: 40

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_017441	CAAAAA	2	12	6852	6863	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_017441	TAGTGA	2	12	12695	12706	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
3	NC_017441	AAAATT	2	12	54560	54571	66.67 %	33.33 %	0 %	0 %	Non-Coding
4	NC_017441	AAAAAT	2	12	61370	61381	83.33 %	16.67 %	0 %	0 %	Non-Coding
5	NC_017441	ATCTAG	2	12	77093	77104	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
6	NC_017441	TTTTAG	2	12	116359	116370	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
7	NC_017441	TAAAAA	2	12	120955	120966	83.33 %	16.67 %	0 %	0 %	Non-Coding
8	NC_017441	AGAAAA	2	12	182583	182594	83.33 %	0 %	16.67 %	0 %	Non-Coding
9	NC_017441	TATGAA	2	12	195396	195407	50 %	33.33 %	16.67 %	0 %	Non-Coding
10	NC_017441	TTTTAC	2	12	221681	221692	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
11	NC_017441	AACCCT	2	12	255394	255405	33.33 %	16.67 %	0 %	50 %	Non-Coding
12	NC_017441	ATTTTT	2	12	256198	256209	16.67 %	83.33 %	0 %	0 %	Non-Coding
13	NC_017441	AGGAGA	2	12	271297	271308	50 %	0 %	50 %	0 %	Non-Coding
14	NC_017441	ATATTA	2	12	280195	280206	50 %	50 %	0 %	0 %	Non-Coding
15	NC_017441	AAAAAT	2	12	322547	322558	83.33 %	16.67 %	0 %	0 %	Non-Coding
16	NC_017441	AAAAAG	2	12	324365	324376	83.33 %	0 %	16.67 %	0 %	Non-Coding
17	NC_017441	AGAATA	2	12	361859	361870	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
18	NC_017441	TTTTAA	2	12	410006	410017	33.33 %	66.67 %	0 %	0 %	Non-Coding
19	NC_017441	TAACTA	2	12	503583	503594	50 %	33.33 %	0 %	16.67 %	Non-Coding
20	NC_017441	AAGAAA	2	12	503596	503607	83.33 %	0 %	16.67 %	0 %	Non-Coding
21	NC_017441	AGAATA	2	12	509574	509585	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
22	NC_017441	AACTAA	2	12	515310	515321	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
23	NC_017441	TCCCTC	2	12	549200	549211	0 %	33.33 %	0 %	66.67 %	Non-Coding
24	NC_017441	AAAAAT	2	12	567172	567183	83.33 %	16.67 %	0 %	0 %	Non-Coding
25	NC_017441	TAGGGG	2	12	606325	606336	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
26	NC_017441	TCTTTT	2	12	618310	618321	0 %	83.33 %	0 %	16.67 %	Non-Coding
27	NC_017441	TTATTT	2	12	649522	649533	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_017441	TATTTT	2	12	755468	755479	16.67 %	83.33 %	0 %	0 %	Non-Coding
29	NC_017441	TTTTCT	2	12	805383	805394	0 %	83.33 %	0 %	16.67 %	Non-Coding
30	NC_017441	ATTTTT	2	12	809162	809173	16.67 %	83.33 %	0 %	0 %	Non-Coding
31	NC_017441	ATTTTT	2	12	835641	835652	16.67 %	83.33 %	0 %	0 %	Non-Coding
32	NC_017441	TAAGGA	2	12	856605	856616	50 %	16.67 %	33.33 %	0 %	Non-Coding
33	NC_017441	CCGGAG	2	12	857523	857534	16.67 %	0 %	50 %	33.33 %	Non-Coding
34	NC_017441	CCTCTA	2	12	870674	870685	16.67 %	33.33 %	0 %	50 %	Non-Coding
35	NC_017441	TAAGGA	2	12	878656	878667	50 %	16.67 %	33.33 %	0 %	Non-Coding
36	NC_017441	CCGGAG	2	12	879574	879585	16.67 %	0 %	50 %	33.33 %	Non-Coding
37	NC_017441	AAACAA	2	12	923686	923697	83.33 %	0 %	0 %	16.67 %	Non-Coding
38	NC_017441	ATAGGG	2	12	946268	946279	33.33 %	16.67 %	50 %	0 %	Non-Coding
39	NC_017441	ATTTTT	2	12	1039173	1039184	16.67 %	83.33 %	0 %	0 %	Non-Coding
40	NC_017441	TAAAAT	2	12	1042796	1042807	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.