MICAS: Microsatellite Analysis Server 3.0

Tri-nucleotide Non-Coding Repeats of Clostridium perfringens SM101 plasmid pSM101A

Total Repeats: 64

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_008263	AAG	2	6	102	107	66.67 %	0 %	33.33 %	0 %	Non-Coding
2	NC_008263	GGA	2	6	399	404	33.33 %	0 %	66.67 %	0 %	Non-Coding
3	NC_008263	GAT	2	6	476	481	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
4	NC_008263	TAA	2	6	484	489	66.67 %	33.33 %	0 %	0 %	Non-Coding
5	NC_008263	ATA	2	6	594	599	66.67 %	33.33 %	0 %	0 %	Non-Coding
6	NC_008263	GAT	2	6	671	676	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
7	NC_008263	GCT	2	6	727	732	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
8	NC_008263	TAA	2	6	886	891	66.67 %	33.33 %	0 %	0 %	Non-Coding
9	NC_008263	ATA	2	6	918	923	66.67 %	33.33 %	0 %	0 %	Non-Coding
10	NC_008263	GCT	2	6	931	936	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
11	NC_008263	AGA	2	6	1129	1134	66.67 %	0 %	33.33 %	0 %	Non-Coding
12	NC_008263	TTA	2	6	1681	1686	33.33 %	66.67 %	0 %	0 %	Non-Coding
13	NC_008263	AGT	2	6	1707	1712	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
14	NC_008263	ATA	2	6	1717	1722	66.67 %	33.33 %	0 %	0 %	Non-Coding
15	NC_008263	TAT	2	6	1727	1732	33.33 %	66.67 %	0 %	0 %	Non-Coding
16	NC_008263	AAT	2	6	1734	1739	66.67 %	33.33 %	0 %	0 %	Non-Coding
17	NC_008263	TAA	2	6	1805	1810	66.67 %	33.33 %	0 %	0 %	Non-Coding
18	NC_008263	TAT	2	6	1850	1855	33.33 %	66.67 %	0 %	0 %	Non-Coding
19	NC_008263	AAG	2	6	1948	1953	66.67 %	0 %	33.33 %	0 %	Non-Coding
20	NC_008263	TCT	2	6	2684	2689	0 %	66.67 %	0 %	33.33 %	Non-Coding
21	NC_008263	GAG	2	6	3971	3976	33.33 %	0 %	66.67 %	0 %	Non-Coding
22	NC_008263	AGG	2	6	4588	4593	33.33 %	0 %	66.67 %	0 %	Non-Coding
23	NC_008263	TAA	2	6	8413	8418	66.67 %	33.33 %	0 %	0 %	Non-Coding
24	NC_008263	TAA	2	6	8497	8502	66.67 %	33.33 %	0 %	0 %	Non-Coding
25	NC_008263	TGG	2	6	8510	8515	0 %	33.33 %	66.67 %	0 %	Non-Coding
26	NC_008263	TAA	2	6	9097	9102	66.67 %	33.33 %	0 %	0 %	Non-Coding
27	NC_008263	TAT	2	6	9107	9112	33.33 %	66.67 %	0 %	0 %	Non-Coding
28	NC_008263	TAT	2	6	9177	9182	33.33 %	66.67 %	0 %	0 %	Non-Coding
29	NC_008263	ATA	2	6	9226	9231	66.67 %	33.33 %	0 %	0 %	Non-Coding
30	NC_008263	AAG	2	6	9414	9419	66.67 %	0 %	33.33 %	0 %	Non-Coding
31	NC_008263	ATA	2	6	9517	9522	66.67 %	33.33 %	0 %	0 %	Non-Coding
32	NC_008263	CAC	2	6	9699	9704	33.33 %	0 %	0 %	66.67 %	Non-Coding
33	NC_008263	AGC	2	6	9709	9714	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
34	NC_008263	CTT	2	6	9736	9741	0 %	66.67 %	0 %	33.33 %	Non-Coding
35	NC_008263	ATA	2	6	9758	9763	66.67 %	33.33 %	0 %	0 %	Non-Coding
36	NC_008263	TAG	2	6	9770	9775	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
37	NC_008263	TGG	2	6	9790	9795	0 %	33.33 %	66.67 %	0 %	Non-Coding
38	NC_008263	GTA	2	6	9836	9841	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
39	NC_008263	GTA	2	6	9966	9971	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
40	NC_008263	TAC	2	6	10003	10008	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
41	NC_008263	CAA	2	6	10072	10077	66.67 %	0 %	0 %	33.33 %	Non-Coding
42	NC_008263	AAG	2	6	10173	10178	66.67 %	0 %	33.33 %	0 %	Non-Coding
43	NC_008263	AAG	2	6	10185	10190	66.67 %	0 %	33.33 %	0 %	Non-Coding
44	NC_008263	TAT	2	6	10191	10196	33.33 %	66.67 %	0 %	0 %	Non-Coding
45	NC_008263	TAC	2	6	10235	10240	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
46	NC_008263	AGA	2	6	10304	10309	66.67 %	0 %	33.33 %	0 %	Non-Coding
47	NC_008263	ATA	2	6	10339	10344	66.67 %	33.33 %	0 %	0 %	Non-Coding
48	NC_008263	ATA	2	6	10387	10392	66.67 %	33.33 %	0 %	0 %	Non-Coding
49	NC_008263	TAA	2	6	10472	10477	66.67 %	33.33 %	0 %	0 %	Non-Coding
50	NC_008263	AGA	2	6	10517	10522	66.67 %	0 %	33.33 %	0 %	Non-Coding
51	NC_008263	ATA	2	6	10572	10577	66.67 %	33.33 %	0 %	0 %	Non-Coding
52	NC_008263	TAA	2	6	10704	10709	66.67 %	33.33 %	0 %	0 %	Non-Coding
53	NC_008263	GTT	2	6	11464	11469	0 %	66.67 %	33.33 %	0 %	Non-Coding
54	NC_008263	ATC	2	6	11478	11483	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
55	NC_008263	AAT	2	6	11493	11498	66.67 %	33.33 %	0 %	0 %	Non-Coding
56	NC_008263	ATA	2	6	11516	11521	66.67 %	33.33 %	0 %	0 %	Non-Coding
57	NC_008263	ATT	2	6	11708	11713	33.33 %	66.67 %	0 %	0 %	Non-Coding
58	NC_008263	TAA	2	6	11892	11897	66.67 %	33.33 %	0 %	0 %	Non-Coding
59	NC_008263	GTG	2	6	11981	11986	0 %	33.33 %	66.67 %	0 %	Non-Coding
60	NC_008263	ATT	2	6	12000	12005	33.33 %	66.67 %	0 %	0 %	Non-Coding
61	NC_008263	TGC	2	6	12150	12155	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
62	NC_008263	ATT	2	6	12167	12172	33.33 %	66.67 %	0 %	0 %	Non-Coding
63	NC_008263	GAA	2	6	12227	12232	66.67 %	0 %	33.33 %	0 %	Non-Coding
64	NC_008263	TAT	2	6	12319	12324	33.33 %	66.67 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.