MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Chlamydia trachomatis A/HAR-13

Total Repeats: 41

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_007429	CAAAAA	2	12	6846	6857	83.33 %	0 %	0 %	16.67 %	Non-Coding
2	NC_007429	AAAAAT	2	12	61545	61556	83.33 %	16.67 %	0 %	0 %	Non-Coding
3	NC_007429	ATCTAG	2	12	77267	77278	33.33 %	33.33 %	16.67 %	16.67 %	Non-Coding
4	NC_007429	TTTTAG	2	12	116534	116545	16.67 %	66.67 %	16.67 %	0 %	Non-Coding
5	NC_007429	TAAAAA	2	12	121131	121142	83.33 %	16.67 %	0 %	0 %	Non-Coding
6	NC_007429	AGGATC	2	12	121558	121569	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
7	NC_007429	AGAAAA	2	12	183342	183353	83.33 %	0 %	16.67 %	0 %	Non-Coding
8	NC_007429	TATGAA	2	12	197105	197116	50 %	33.33 %	16.67 %	0 %	Non-Coding
9	NC_007429	TTTTAC	2	12	223116	223127	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
10	NC_007429	AACCCT	2	12	256832	256843	33.33 %	16.67 %	0 %	50 %	Non-Coding
11	NC_007429	TTTTTA	2	12	257628	257639	16.67 %	83.33 %	0 %	0 %	Non-Coding
12	NC_007429	AGGAGA	2	12	272728	272739	50 %	0 %	50 %	0 %	Non-Coding
13	NC_007429	ATATTA	2	12	281625	281636	50 %	50 %	0 %	0 %	Non-Coding
14	NC_007429	AAAAAG	2	12	325783	325794	83.33 %	0 %	16.67 %	0 %	Non-Coding
15	NC_007429	AGAATA	2	12	363258	363269	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
16	NC_007429	TTTTAA	2	12	411415	411426	33.33 %	66.67 %	0 %	0 %	Non-Coding
17	NC_007429	TTCTCC	2	12	445288	445299	0 %	50 %	0 %	50 %	Non-Coding
18	NC_007429	TAACTA	2	12	504982	504993	50 %	33.33 %	0 %	16.67 %	Non-Coding
19	NC_007429	AAGAAA	2	12	504995	505006	83.33 %	0 %	16.67 %	0 %	Non-Coding
20	NC_007429	AGAATA	2	12	510970	510981	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
21	NC_007429	AACTAA	2	12	516708	516719	66.67 %	16.67 %	0 %	16.67 %	Non-Coding
22	NC_007429	AAAAAT	2	12	568998	569009	83.33 %	16.67 %	0 %	0 %	Non-Coding
23	NC_007429	TAGGGG	2	12	608166	608177	16.67 %	16.67 %	66.67 %	0 %	Non-Coding
24	NC_007429	TCTTTT	2	12	620160	620171	0 %	83.33 %	0 %	16.67 %	Non-Coding
25	NC_007429	TTATTT	2	12	651371	651382	16.67 %	83.33 %	0 %	0 %	Non-Coding
26	NC_007429	TCTGCA	2	12	747842	747853	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
27	NC_007429	TATTTT	2	12	757320	757331	16.67 %	83.33 %	0 %	0 %	Non-Coding
28	NC_007429	GAGAAA	2	12	804785	804796	66.67 %	0 %	33.33 %	0 %	Non-Coding
29	NC_007429	TTTTCT	2	12	807243	807254	0 %	83.33 %	0 %	16.67 %	Non-Coding
30	NC_007429	ATTTTT	2	12	811022	811033	16.67 %	83.33 %	0 %	0 %	Non-Coding
31	NC_007429	TTTTTA	2	12	837460	837471	16.67 %	83.33 %	0 %	0 %	Non-Coding
32	NC_007429	TGGATG	2	12	857706	857717	16.67 %	33.33 %	50 %	0 %	Non-Coding
33	NC_007429	TAAGGA	2	12	858423	858434	50 %	16.67 %	33.33 %	0 %	Non-Coding
34	NC_007429	CCGGAG	2	12	859341	859352	16.67 %	0 %	50 %	33.33 %	Non-Coding
35	NC_007429	CCTCTA	2	12	872487	872498	16.67 %	33.33 %	0 %	50 %	Non-Coding
36	NC_007429	TGGATG	2	12	879752	879763	16.67 %	33.33 %	50 %	0 %	Non-Coding
37	NC_007429	TAAGGA	2	12	880469	880480	50 %	16.67 %	33.33 %	0 %	Non-Coding
38	NC_007429	CCGGAG	2	12	881387	881398	16.67 %	0 %	50 %	33.33 %	Non-Coding
39	NC_007429	AAACAA	2	12	925504	925515	83.33 %	0 %	0 %	16.67 %	Non-Coding
40	NC_007429	ATTTTT	2	12	1040861	1040872	16.67 %	83.33 %	0 %	0 %	Non-Coding
41	NC_007429	TAAAAT	2	12	1044416	1044427	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.