MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Agrobacterium sp. H13-3 chromosome

Total Repeats: 81

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_015183	GCTTTT	2	12	56991	57002	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
2	NC_015183	ATCCGG	2	12	61998	62009	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
3	NC_015183	CCGTTC	2	12	91181	91192	0 %	33.33 %	16.67 %	50 %	Non-Coding
4	NC_015183	TTCACC	2	12	94452	94463	16.67 %	33.33 %	0 %	50 %	Non-Coding
5	NC_015183	TATGAA	2	12	109972	109983	50 %	33.33 %	16.67 %	0 %	Non-Coding
6	NC_015183	GTTTTT	2	12	148067	148078	0 %	83.33 %	16.67 %	0 %	Non-Coding
7	NC_015183	TGAAAA	2	12	170042	170053	66.67 %	16.67 %	16.67 %	0 %	Non-Coding
8	NC_015183	CCCGCT	2	12	174707	174718	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
9	NC_015183	TGTTTC	2	12	199746	199757	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
10	NC_015183	CAAAAA	2	12	286075	286086	83.33 %	0 %	0 %	16.67 %	Non-Coding
11	NC_015183	ATTTTT	2	12	312709	312720	16.67 %	83.33 %	0 %	0 %	Non-Coding
12	NC_015183	GGTAAA	2	12	424515	424526	50 %	16.67 %	33.33 %	0 %	Non-Coding
13	NC_015183	GACAGG	2	12	438397	438408	33.33 %	0 %	50 %	16.67 %	Non-Coding
14	NC_015183	CAATGA	2	12	536429	536440	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
15	NC_015183	TACATT	2	12	556965	556976	33.33 %	50 %	0 %	16.67 %	Non-Coding
16	NC_015183	CGATTC	2	12	602813	602824	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
17	NC_015183	AAAAAG	2	12	688424	688435	83.33 %	0 %	16.67 %	0 %	Non-Coding
18	NC_015183	AAACGG	2	12	690163	690174	50 %	0 %	33.33 %	16.67 %	Non-Coding
19	NC_015183	CTGCCG	2	12	715843	715854	0 %	16.67 %	33.33 %	50 %	Non-Coding
20	NC_015183	GGGCAA	2	12	726858	726869	33.33 %	0 %	50 %	16.67 %	Non-Coding
21	NC_015183	CCAATC	2	12	734723	734734	33.33 %	16.67 %	0 %	50 %	Non-Coding
22	NC_015183	TTTTGC	2	12	756682	756693	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
23	NC_015183	GCGTTT	2	12	762104	762115	0 %	50 %	33.33 %	16.67 %	Non-Coding
24	NC_015183	GGGGCT	2	12	836573	836584	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
25	NC_015183	GGGAGA	2	12	919669	919680	33.33 %	0 %	66.67 %	0 %	Non-Coding
26	NC_015183	CTGCCG	2	12	928560	928571	0 %	16.67 %	33.33 %	50 %	Non-Coding
27	NC_015183	AACCAT	2	12	989410	989421	50 %	16.67 %	0 %	33.33 %	Non-Coding
28	NC_015183	TCAATT	2	12	1055240	1055251	33.33 %	50 %	0 %	16.67 %	Non-Coding
29	NC_015183	CCAATA	2	12	1060681	1060692	50 %	16.67 %	0 %	33.33 %	Non-Coding
30	NC_015183	AGGAAA	2	12	1061709	1061720	66.67 %	0 %	33.33 %	0 %	Non-Coding
31	NC_015183	GCCGCA	2	12	1076246	1076257	16.67 %	0 %	33.33 %	50 %	Non-Coding
32	NC_015183	TTTCTG	2	12	1095301	1095312	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
33	NC_015183	ATGCGC	2	12	1154313	1154324	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
34	NC_015183	CACACC	2	12	1163062	1163073	33.33 %	0 %	0 %	66.67 %	Non-Coding
35	NC_015183	GTAAGG	2	12	1165218	1165229	33.33 %	16.67 %	50 %	0 %	Non-Coding
36	NC_015183	TTTGCG	2	12	1186251	1186262	0 %	50 %	33.33 %	16.67 %	Non-Coding
37	NC_015183	GCTTCG	2	12	1195269	1195280	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
38	NC_015183	TGTGCT	2	12	1228971	1228982	0 %	50 %	33.33 %	16.67 %	Non-Coding
39	NC_015183	GGGAAA	2	12	1331394	1331405	50 %	0 %	50 %	0 %	Non-Coding
40	NC_015183	TTCTCA	2	12	1445241	1445252	16.67 %	50 %	0 %	33.33 %	Non-Coding
41	NC_015183	AAGTCG	2	12	1509329	1509340	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
42	NC_015183	AGAAAA	2	12	1509408	1509419	83.33 %	0 %	16.67 %	0 %	Non-Coding
43	NC_015183	GGGTTG	2	12	1517069	1517080	0 %	33.33 %	66.67 %	0 %	Non-Coding
44	NC_015183	ATGGCG	2	12	1534980	1534991	16.67 %	16.67 %	50 %	16.67 %	Non-Coding
45	NC_015183	TGGTGA	2	12	1536766	1536777	16.67 %	33.33 %	50 %	0 %	Non-Coding
46	NC_015183	TTGCCA	2	12	1571787	1571798	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
47	NC_015183	TGTTTT	2	12	1614760	1614771	0 %	83.33 %	16.67 %	0 %	Non-Coding
48	NC_015183	AAAAAT	2	12	1828804	1828815	83.33 %	16.67 %	0 %	0 %	Non-Coding
49	NC_015183	TACAGG	2	12	1857750	1857761	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
50	NC_015183	TCCTCA	2	12	1860893	1860904	16.67 %	33.33 %	0 %	50 %	Non-Coding
51	NC_015183	CTGTCA	2	12	1864621	1864632	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
52	NC_015183	TTTGCC	2	12	1900200	1900211	0 %	50 %	16.67 %	33.33 %	Non-Coding
53	NC_015183	CAGGCA	2	12	1900287	1900298	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
54	NC_015183	ATAAAA	2	12	1906687	1906698	83.33 %	16.67 %	0 %	0 %	Non-Coding
55	NC_015183	GCTTTG	2	12	1951600	1951611	0 %	50 %	33.33 %	16.67 %	Non-Coding
56	NC_015183	TCGATT	2	12	1982435	1982446	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
57	NC_015183	CAGGAA	2	12	1989663	1989674	50 %	0 %	33.33 %	16.67 %	Non-Coding
58	NC_015183	AGGTAT	2	12	2076020	2076031	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
59	NC_015183	TGCCGT	2	12	2080627	2080638	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
60	NC_015183	TTGTCT	2	12	2148105	2148116	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
61	NC_015183	AGCGTC	2	12	2183931	2183942	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
62	NC_015183	TTCTTT	2	12	2199685	2199696	0 %	83.33 %	0 %	16.67 %	Non-Coding
63	NC_015183	GCCCCC	2	12	2238109	2238120	0 %	0 %	16.67 %	83.33 %	Non-Coding
64	NC_015183	ATCCCC	2	12	2262492	2262503	16.67 %	16.67 %	0 %	66.67 %	Non-Coding
65	NC_015183	TTTTTA	2	12	2272196	2272207	16.67 %	83.33 %	0 %	0 %	Non-Coding
66	NC_015183	GATTCC	2	12	2276691	2276702	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
67	NC_015183	CCTCAT	2	12	2294567	2294578	16.67 %	33.33 %	0 %	50 %	Non-Coding
68	NC_015183	GGCAAC	2	12	2342771	2342782	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
69	NC_015183	CCCCGG	2	12	2346499	2346510	0 %	0 %	33.33 %	66.67 %	Non-Coding
70	NC_015183	AAACCC	2	12	2362205	2362216	50 %	0 %	0 %	50 %	Non-Coding
71	NC_015183	AAGACA	2	12	2424988	2424999	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
72	NC_015183	GACCTT	2	12	2435919	2435930	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
73	NC_015183	TTGGCG	2	12	2443432	2443443	0 %	33.33 %	50 %	16.67 %	Non-Coding
74	NC_015183	CCGGAT	2	12	2493783	2493794	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
75	NC_015183	CAAAAG	2	12	2498789	2498800	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
76	NC_015183	AAGGGC	2	12	2533074	2533085	33.33 %	0 %	50 %	16.67 %	Non-Coding
77	NC_015183	ACGTAA	2	12	2605999	2606010	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
78	NC_015183	AGATCA	2	12	2668020	2668031	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
79	NC_015183	AGCCTT	3	18	2700172	2700189	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
80	NC_015183	ACGCTG	2	12	2732100	2732111	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
81	NC_015183	TGCCTT	2	12	2732591	2732602	0 %	50 %	16.67 %	33.33 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.