MICAS: Microsatellite Analysis Server 3.0

Hexa-nucleotide Non-Coding Repeats of Acidiphilium cryptum JF-5 chromosome

Total Repeats: 101

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_009484	TCGCTG	2	12	45995	46006	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
2	NC_009484	GGCGCG	2	12	205027	205038	0 %	0 %	66.67 %	33.33 %	Non-Coding
3	NC_009484	ACCGCG	2	12	209048	209059	16.67 %	0 %	33.33 %	50 %	Non-Coding
4	NC_009484	CGGGGA	2	12	266892	266903	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
5	NC_009484	GACCTT	2	12	299417	299428	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
6	NC_009484	CCGGCC	2	12	314822	314833	0 %	0 %	33.33 %	66.67 %	Non-Coding
7	NC_009484	GGCAGC	2	12	329022	329033	16.67 %	0 %	50 %	33.33 %	Non-Coding
8	NC_009484	TCGCCC	2	12	397370	397381	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
9	NC_009484	TCGCCG	2	12	397466	397477	0 %	16.67 %	33.33 %	50 %	Non-Coding
10	NC_009484	CCACGC	2	12	398329	398340	16.67 %	0 %	16.67 %	66.67 %	Non-Coding
11	NC_009484	GCCCGC	2	12	398506	398517	0 %	0 %	33.33 %	66.67 %	Non-Coding
12	NC_009484	CCGCCT	2	12	398695	398706	0 %	16.67 %	16.67 %	66.67 %	Non-Coding
13	NC_009484	CGGCGC	2	12	403816	403827	0 %	0 %	50 %	50 %	Non-Coding
14	NC_009484	GCGCCG	2	12	439904	439915	0 %	0 %	50 %	50 %	Non-Coding
15	NC_009484	TTTTCA	2	12	441378	441389	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
16	NC_009484	CCGTCT	2	12	486485	486496	0 %	33.33 %	16.67 %	50 %	Non-Coding
17	NC_009484	CATTTT	2	12	555112	555123	16.67 %	66.67 %	0 %	16.67 %	Non-Coding
18	NC_009484	CTGTTT	2	12	590361	590372	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
19	NC_009484	GCCGGG	2	12	615332	615343	0 %	0 %	66.67 %	33.33 %	Non-Coding
20	NC_009484	CCGGCC	2	12	626745	626756	0 %	0 %	33.33 %	66.67 %	Non-Coding
21	NC_009484	GCGCCG	2	12	678648	678659	0 %	0 %	50 %	50 %	Non-Coding
22	NC_009484	CGCGCC	2	12	685661	685672	0 %	0 %	33.33 %	66.67 %	Non-Coding
23	NC_009484	CATCCG	2	12	716732	716743	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
24	NC_009484	GGGAAA	2	12	737719	737730	50 %	0 %	50 %	0 %	Non-Coding
25	NC_009484	CGCTGG	2	12	751895	751906	0 %	16.67 %	50 %	33.33 %	Non-Coding
26	NC_009484	CAAACG	2	12	785642	785653	50 %	0 %	16.67 %	33.33 %	Non-Coding
27	NC_009484	GGCGAG	2	12	818734	818745	16.67 %	0 %	66.67 %	16.67 %	Non-Coding
28	NC_009484	ACGGCG	2	12	818876	818887	16.67 %	0 %	50 %	33.33 %	Non-Coding
29	NC_009484	TGGCCG	2	12	824960	824971	0 %	16.67 %	50 %	33.33 %	Non-Coding
30	NC_009484	TGAAGG	2	12	863508	863519	33.33 %	16.67 %	50 %	0 %	Non-Coding
31	NC_009484	CGCCGG	2	12	874953	874964	0 %	0 %	50 %	50 %	Non-Coding
32	NC_009484	TCCTCG	2	12	965907	965918	0 %	33.33 %	16.67 %	50 %	Non-Coding
33	NC_009484	CCCACC	2	12	970166	970177	16.67 %	0 %	0 %	83.33 %	Non-Coding
34	NC_009484	GCCAGC	2	12	978499	978510	16.67 %	0 %	33.33 %	50 %	Non-Coding
35	NC_009484	AGCCGC	2	12	1052665	1052676	16.67 %	0 %	33.33 %	50 %	Non-Coding
36	NC_009484	GCCGGC	2	12	1137848	1137859	0 %	0 %	50 %	50 %	Non-Coding
37	NC_009484	AGACGG	2	12	1140027	1140038	33.33 %	0 %	50 %	16.67 %	Non-Coding
38	NC_009484	CCGCGC	2	12	1145027	1145038	0 %	0 %	33.33 %	66.67 %	Non-Coding
39	NC_009484	GCCGGG	2	12	1202163	1202174	0 %	0 %	66.67 %	33.33 %	Non-Coding
40	NC_009484	CAGGAT	2	12	1263488	1263499	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
41	NC_009484	CGCCGG	2	12	1264781	1264792	0 %	0 %	50 %	50 %	Non-Coding
42	NC_009484	GCCGTT	2	12	1318066	1318077	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
43	NC_009484	CCCGGC	2	12	1437259	1437270	0 %	0 %	33.33 %	66.67 %	Non-Coding
44	NC_009484	CGCCGG	2	12	1469464	1469475	0 %	0 %	50 %	50 %	Non-Coding
45	NC_009484	GCCCCG	2	12	1490814	1490825	0 %	0 %	33.33 %	66.67 %	Non-Coding
46	NC_009484	TTTGAA	2	12	1691619	1691630	33.33 %	50 %	16.67 %	0 %	Non-Coding
47	NC_009484	CTGGCG	2	12	1696197	1696208	0 %	16.67 %	50 %	33.33 %	Non-Coding
48	NC_009484	CCGGCG	2	12	1698820	1698831	0 %	0 %	50 %	50 %	Non-Coding
49	NC_009484	CGGGCG	2	12	1810280	1810291	0 %	0 %	66.67 %	33.33 %	Non-Coding
50	NC_009484	CCCGCC	2	12	1848345	1848356	0 %	0 %	16.67 %	83.33 %	Non-Coding
51	NC_009484	CGCGCC	2	12	1863110	1863121	0 %	0 %	33.33 %	66.67 %	Non-Coding
52	NC_009484	CGTTTT	2	12	1876278	1876289	0 %	66.67 %	16.67 %	16.67 %	Non-Coding
53	NC_009484	ATTTCG	2	12	1879412	1879423	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
54	NC_009484	GGATGA	2	12	1899577	1899588	33.33 %	16.67 %	50 %	0 %	Non-Coding
55	NC_009484	CTACGC	2	12	2009882	2009893	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
56	NC_009484	ATTTGA	2	12	2013355	2013366	33.33 %	50 %	16.67 %	0 %	Non-Coding
57	NC_009484	CGCCGG	2	12	2059695	2059706	0 %	0 %	50 %	50 %	Non-Coding
58	NC_009484	CAGCGG	2	12	2078208	2078219	16.67 %	0 %	50 %	33.33 %	Non-Coding
59	NC_009484	CTGGGC	2	12	2080215	2080226	0 %	16.67 %	50 %	33.33 %	Non-Coding
60	NC_009484	GGGGGT	2	12	2099964	2099975	0 %	16.67 %	83.33 %	0 %	Non-Coding
61	NC_009484	CTGTCT	2	12	2120739	2120750	0 %	50 %	16.67 %	33.33 %	Non-Coding
62	NC_009484	GATCCT	2	12	2135203	2135214	16.67 %	33.33 %	16.67 %	33.33 %	Non-Coding
63	NC_009484	GACGCT	2	12	2187202	2187213	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
64	NC_009484	ACGAAA	2	12	2207951	2207962	66.67 %	0 %	16.67 %	16.67 %	Non-Coding
65	NC_009484	GCCCGC	2	12	2289839	2289850	0 %	0 %	33.33 %	66.67 %	Non-Coding
66	NC_009484	GCCCGC	2	12	2292176	2292187	0 %	0 %	33.33 %	66.67 %	Non-Coding
67	NC_009484	CCGCGC	2	12	2308789	2308800	0 %	0 %	33.33 %	66.67 %	Non-Coding
68	NC_009484	TCGGGT	2	12	2337191	2337202	0 %	33.33 %	50 %	16.67 %	Non-Coding
69	NC_009484	GCGCGG	2	12	2352689	2352700	0 %	0 %	66.67 %	33.33 %	Non-Coding
70	NC_009484	AGATCG	2	12	2395900	2395911	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
71	NC_009484	TGCCTC	2	12	2405820	2405831	0 %	33.33 %	16.67 %	50 %	Non-Coding
72	NC_009484	AATTGG	2	12	2455937	2455948	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
73	NC_009484	GGCGCG	2	12	2532389	2532400	0 %	0 %	66.67 %	33.33 %	Non-Coding
74	NC_009484	CCAGCA	2	12	2537899	2537910	33.33 %	0 %	16.67 %	50 %	Non-Coding
75	NC_009484	CGCCGG	2	12	2558937	2558948	0 %	0 %	50 %	50 %	Non-Coding
76	NC_009484	TCCAAC	2	12	2561375	2561386	33.33 %	16.67 %	0 %	50 %	Non-Coding
77	NC_009484	CTCGGC	2	12	2569275	2569286	0 %	16.67 %	33.33 %	50 %	Non-Coding
78	NC_009484	CTACGC	2	12	2588037	2588048	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
79	NC_009484	ATCGCC	2	12	2698702	2698713	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
80	NC_009484	GGACGC	2	12	2703962	2703973	16.67 %	0 %	50 %	33.33 %	Non-Coding
81	NC_009484	GTTTTG	2	12	2714048	2714059	0 %	66.67 %	33.33 %	0 %	Non-Coding
82	NC_009484	CAAAAC	2	12	2714110	2714121	66.67 %	0 %	0 %	33.33 %	Non-Coding
83	NC_009484	GCTCCG	2	12	2744242	2744253	0 %	16.67 %	33.33 %	50 %	Non-Coding
84	NC_009484	GCTATG	2	12	2748575	2748586	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
85	NC_009484	CGCTCG	2	12	2748629	2748640	0 %	16.67 %	33.33 %	50 %	Non-Coding
86	NC_009484	GGCTGG	2	12	2748761	2748772	0 %	16.67 %	66.67 %	16.67 %	Non-Coding
87	NC_009484	GATCGA	2	12	2776113	2776124	33.33 %	16.67 %	33.33 %	16.67 %	Non-Coding
88	NC_009484	GCCGGC	2	12	2776467	2776478	0 %	0 %	50 %	50 %	Non-Coding
89	NC_009484	GTGATC	2	12	2806801	2806812	16.67 %	33.33 %	33.33 %	16.67 %	Non-Coding
90	NC_009484	CCGGCG	2	12	2916765	2916776	0 %	0 %	50 %	50 %	Non-Coding
91	NC_009484	TTGCGG	2	12	3077958	3077969	0 %	33.33 %	50 %	16.67 %	Non-Coding
92	NC_009484	GCATCG	2	12	3106154	3106165	16.67 %	16.67 %	33.33 %	33.33 %	Non-Coding
93	NC_009484	AAATTC	2	12	3115591	3115602	50 %	33.33 %	0 %	16.67 %	Non-Coding
94	NC_009484	TTACGT	2	12	3232814	3232825	16.67 %	50 %	16.67 %	16.67 %	Non-Coding
95	NC_009484	CCGCTG	2	12	3263330	3263341	0 %	16.67 %	33.33 %	50 %	Non-Coding
96	NC_009484	CAGCGC	2	12	3320754	3320765	16.67 %	0 %	33.33 %	50 %	Non-Coding
97	NC_009484	AACCGT	2	12	3321364	3321375	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
98	NC_009484	AATGAC	2	12	3321795	3321806	50 %	16.67 %	16.67 %	16.67 %	Non-Coding
99	NC_009484	CCACGA	2	12	3343848	3343859	33.33 %	0 %	16.67 %	50 %	Non-Coding
100	NC_009484	CATGCC	2	12	3347901	3347912	16.67 %	16.67 %	16.67 %	50 %	Non-Coding
101	NC_009484	GCAGCC	2	12	3384122	3384133	16.67 %	0 %	33.33 %	50 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.