List of
Imperfect Penta
-nucleotide repeats in Aspergillus oryzae RIB40
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001884672 | GCAAG | 3 | 4087 | 4101 | 15 | 40.00% | 0.00% | 40.00% | 20.00% | 169776867 |
| 2. | NW_001884672 | CTTTT | 5 | 43966 | 43990 | 25 | 0.00% | 80.00% | 0.00% | 20.00% | Non-Coding |
| 3. | NW_001884672 | TTTTC | 3 | 45063 | 45077 | 15 | 0.00% | 80.00% | 0.00% | 20.00% | Non-Coding |
| 4. | NW_001884672 | GAGAT | 3 | 45169 | 45183 | 15 | 40.00% | 20.00% | 40.00% | 0.00% | Non-Coding |
| 5. | NW_001884672 | GAAAA | 3 | 45818 | 45832 | 15 | 80.00% | 0.00% | 20.00% | 0.00% | Non-Coding |
| 6. | NW_001884672 | TTTCT | 3 | 53315 | 53329 | 15 | 0.00% | 80.00% | 0.00% | 20.00% | Non-Coding |
| 7. | NW_001884672 | AAATT | 3 | 61730 | 61744 | 15 | 60.00% | 40.00% | 0.00% | 0.00% | Non-Coding |
| 8. | NW_001884672 | AGAAA | 3 | 66463 | 66477 | 15 | 80.00% | 0.00% | 20.00% | 0.00% | Non-Coding |
| 9. | NW_001884672 | CATTA | 3 | 67123 | 67136 | 14 | 40.00% | 40.00% | 0.00% | 20.00% | Non-Coding |
| 10. | NW_001884672 | TTTTA | 3 | 94148 | 94161 | 14 | 20.00% | 80.00% | 0.00% | 0.00% | Non-Coding |
| 11. | NW_001884672 | GATGG | 3 | 127414 | 127428 | 15 | 20.00% | 20.00% | 60.00% | 0.00% | Non-Coding |
| 12. | NW_001884672 | ATGAA | 3 | 127488 | 127502 | 15 | 60.00% | 20.00% | 20.00% | 0.00% | Non-Coding |
| 13. | NW_001884672 | TACAG | 4 | 172980 | 172999 | 20 | 40.00% | 20.00% | 20.00% | 20.00% | Non-Coding |
| 14. | NW_001884672 | TGGAA | 3 | 173775 | 173788 | 14 | 40.00% | 20.00% | 40.00% | 0.00% | Non-Coding |
| 15. | NW_001884672 | TTTGA | 3 | 197854 | 197867 | 14 | 20.00% | 60.00% | 20.00% | 0.00% | Non-Coding |
| 16. | NW_001884672 | TTTTG | 3 | 198701 | 198715 | 15 | 0.00% | 80.00% | 20.00% | 0.00% | Non-Coding |
| 17. | NW_001884672 | CGTTG | 3 | 211771 | 211784 | 14 | 0.00% | 40.00% | 40.00% | 20.00% | 317148858 |
| 18. | NW_001884672 | AATTG | 3 | 219024 | 219038 | 15 | 40.00% | 40.00% | 20.00% | 0.00% | 317148863 |
| 19. | NW_001884672 | AAATA | 3 | 224189 | 224203 | 15 | 80.00% | 20.00% | 0.00% | 0.00% | Non-Coding |
| 20. | NW_001884672 | TTGGT | 3 | 224549 | 224563 | 15 | 0.00% | 60.00% | 40.00% | 0.00% | Non-Coding |
| 21. | NW_001884672 | TTCTT | 3 | 243623 | 243636 | 14 | 0.00% | 80.00% | 0.00% | 20.00% | Non-Coding |
| 22. | NW_001884672 | CCTTT | 3 | 246003 | 246017 | 15 | 0.00% | 60.00% | 0.00% | 40.00% | Non-Coding |
| 23. | NW_001884672 | AAAGA | 3 | 246201 | 246215 | 15 | 80.00% | 0.00% | 20.00% | 0.00% | Non-Coding |
| 24. | NW_001884672 | GTTTT | 4 | 254150 | 254169 | 20 | 0.00% | 80.00% | 20.00% | 0.00% | Non-Coding |
| 25. | NW_001884672 | GGCTT | 3 | 277717 | 277730 | 14 | 0.00% | 40.00% | 40.00% | 20.00% | Non-Coding |
| 26. | NW_001884672 | GAAAA | 5 | 278337 | 278361 | 25 | 80.00% | 0.00% | 20.00% | 0.00% | 317148898 |
| 27. | NW_001884672 | GGGTG | 3 | 287624 | 287638 | 15 | 0.00% | 20.00% | 80.00% | 0.00% | Non-Coding |
| 28. | NW_001884672 | CTGTA | 5 | 289848 | 289872 | 25 | 20.00% | 40.00% | 20.00% | 20.00% | Non-Coding |
| 29. | NW_001884672 | ATGAG | 5 | 292623 | 292647 | 25 | 40.00% | 20.00% | 40.00% | 0.00% | Non-Coding |
| 30. | NW_001884672 | AATAT | 3 | 301657 | 301670 | 14 | 60.00% | 40.00% | 0.00% | 0.00% | Non-Coding |
| 31. | NW_001884672 | TCTTA | 3 | 302445 | 302459 | 15 | 20.00% | 60.00% | 0.00% | 20.00% | Non-Coding |
| 32. | NW_001884672 | TTCTT | 3 | 313919 | 313933 | 15 | 0.00% | 80.00% | 0.00% | 20.00% | Non-Coding |
| 33. | NW_001884672 | TTGAA | 3 | 324475 | 324489 | 15 | 40.00% | 40.00% | 20.00% | 0.00% | Non-Coding |
| 34. | NW_001884672 | TTTTA | 3 | 332788 | 332802 | 15 | 20.00% | 80.00% | 0.00% | 0.00% | Non-Coding |
| 35. | NW_001884672 | CCCTT | 3 | 335044 | 335058 | 15 | 0.00% | 40.00% | 0.00% | 60.00% | Non-Coding |
| 36. | NW_001884672 | CTTTT | 3 | 336617 | 336632 | 16 | 0.00% | 80.00% | 0.00% | 20.00% | Non-Coding |
| 37. | NW_001884672 | TTGTA | 4 | 341227 | 341247 | 21 | 20.00% | 60.00% | 20.00% | 0.00% | Non-Coding |
| 38. | NW_001884672 | TTCTT | 3 | 352154 | 352169 | 16 | 0.00% | 80.00% | 0.00% | 20.00% | Non-Coding |
| 39. | NW_001884672 | AGCAC | 3 | 366282 | 366295 | 14 | 40.00% | 0.00% | 20.00% | 40.00% | 169777095 |
| 40. | NW_001884672 | ATTGG | 3 | 376418 | 376431 | 14 | 20.00% | 40.00% | 40.00% | 0.00% | 317148929 |
| 41. | NW_001884672 | CTTGC | 3 | 395052 | 395065 | 14 | 0.00% | 40.00% | 20.00% | 40.00% | 317148947 |
| 42. | NW_001884672 | AAAAG | 4 | 402743 | 402761 | 19 | 80.00% | 0.00% | 20.00% | 0.00% | 169777121 |
| 43. | NW_001884672 | TCTTT | 3 | 419882 | 419897 | 16 | 0.00% | 80.00% | 0.00% | 20.00% | Non-Coding |
| 44. | NW_001884672 | GGCAT | 3 | 421819 | 421833 | 15 | 20.00% | 20.00% | 40.00% | 20.00% | Non-Coding |
| 45. | NW_001884672 | CGCTT | 3 | 426904 | 426917 | 14 | 0.00% | 40.00% | 20.00% | 40.00% | 317149811 |
| 46. | NW_001884672 | TTTTA | 3 | 428687 | 428701 | 15 | 20.00% | 80.00% | 0.00% | 0.00% | Non-Coding |
| 47. | NW_001884672 | AAAAG | 3 | 463013 | 463026 | 14 | 80.00% | 0.00% | 20.00% | 0.00% | Non-Coding |
| 48. | NW_001884672 | TATTT | 5 | 499278 | 499302 | 25 | 20.00% | 80.00% | 0.00% | 0.00% | 317149004 |
| 49. | NW_001884672 | TCCCC | 3 | 501219 | 501232 | 14 | 0.00% | 20.00% | 0.00% | 80.00% | 317149004 |
| 50. | NW_001884672 | AAGAA | 3 | 528300 | 528313 | 14 | 80.00% | 0.00% | 20.00% | 0.00% | Non-Coding |
| 51. | NW_001884672 | GACAT | 3 | 548792 | 548806 | 15 | 40.00% | 20.00% | 20.00% | 20.00% | Non-Coding |
| 52. | NW_001884672 | GGCTA | 3 | 583961 | 583974 | 14 | 20.00% | 20.00% | 40.00% | 20.00% | 169777239 |
| 53. | NW_001884672 | AGAAA | 4 | 605398 | 605417 | 20 | 80.00% | 0.00% | 20.00% | 0.00% | Non-Coding |
| 54. | NW_001884672 | AAACC | 3 | 616889 | 616903 | 15 | 60.00% | 0.00% | 0.00% | 40.00% | 169777261 |
| 55. | NW_001884672 | TCACC | 3 | 643454 | 643467 | 14 | 20.00% | 20.00% | 0.00% | 60.00% | 317149062 |
| 56. | NW_001884672 | CTTTG | 3 | 715843 | 715856 | 14 | 0.00% | 60.00% | 20.00% | 20.00% | 169777337 |
| 57. | NW_001884672 | TTGGG | 3 | 742687 | 742702 | 16 | 0.00% | 40.00% | 60.00% | 0.00% | 317149107 |
| 58. | NW_001884672 | GACAC | 3 | 754749 | 754764 | 16 | 40.00% | 0.00% | 20.00% | 40.00% | 169777363 |
| 59. | NW_001884672 | GATCA | 3 | 787646 | 787660 | 15 | 40.00% | 20.00% | 20.00% | 20.00% | Non-Coding |
| 60. | NW_001884672 | AAGAA | 3 | 833112 | 833126 | 15 | 80.00% | 0.00% | 20.00% | 0.00% | Non-Coding |
| 61. | NW_001884672 | AGTTG | 3 | 842301 | 842314 | 14 | 20.00% | 40.00% | 40.00% | 0.00% | Non-Coding |
| 62. | NW_001884672 | AAAGC | 3 | 858117 | 858131 | 15 | 60.00% | 0.00% | 20.00% | 20.00% | Non-Coding |
| 63. | NW_001884672 | TGTGT | 3 | 863430 | 863443 | 14 | 0.00% | 60.00% | 40.00% | 0.00% | Non-Coding |
| 64. | NW_001884672 | GAAGG | 3 | 868424 | 868437 | 14 | 40.00% | 0.00% | 60.00% | 0.00% | Non-Coding |
| 65. | NW_001884672 | ATACC | 3 | 885246 | 885259 | 14 | 40.00% | 20.00% | 0.00% | 40.00% | Non-Coding |
| 66. | NW_001884672 | AGCGG | 3 | 885492 | 885506 | 15 | 20.00% | 0.00% | 60.00% | 20.00% | Non-Coding |
| 67. | NW_001884672 | CGTGT | 6 | 900559 | 900589 | 31 | 0.00% | 40.00% | 40.00% | 20.00% | Non-Coding |
| 68. | NW_001884672 | GGAGA | 3 | 901139 | 901152 | 14 | 40.00% | 0.00% | 60.00% | 0.00% | Non-Coding |
| 69. | NW_001884672 | CCTTT | 3 | 918927 | 918941 | 15 | 0.00% | 60.00% | 0.00% | 40.00% | Non-Coding |
| 70. | NW_001884672 | TCGAA | 3 | 924766 | 924779 | 14 | 40.00% | 20.00% | 20.00% | 20.00% | 317149197 |
| 71. | NW_001884672 | TGGAC | 3 | 940176 | 940191 | 16 | 20.00% | 20.00% | 40.00% | 20.00% | 169777477 |
| 72. | NW_001884672 | GCTCC | 3 | 947440 | 947454 | 15 | 0.00% | 20.00% | 20.00% | 60.00% | 317149204 |
| 73. | NW_001884672 | GATCC | 3 | 956882 | 956895 | 14 | 20.00% | 20.00% | 20.00% | 40.00% | 169777491 |
| 74. | NW_001884672 | GGAAT | 3 | 957640 | 957654 | 15 | 40.00% | 20.00% | 40.00% | 0.00% | Non-Coding |
| 75. | NW_001884672 | CAACA | 3 | 966185 | 966199 | 15 | 60.00% | 0.00% | 0.00% | 40.00% | Non-Coding |
| 76. | NW_001884672 | AAAGA | 4 | 1002978 | 1002997 | 20 | 80.00% | 0.00% | 20.00% | 0.00% | Non-Coding |
| 77. | NW_001884672 | AGAAA | 4 | 1035399 | 1035419 | 21 | 80.00% | 0.00% | 20.00% | 0.00% | Non-Coding |
| 78. | NW_001884672 | CACTT | 3 | 1037163 | 1037177 | 15 | 20.00% | 40.00% | 0.00% | 40.00% | Non-Coding |
| 79. | NW_001884672 | GAAAA | 5 | 1051210 | 1051234 | 25 | 80.00% | 0.00% | 20.00% | 0.00% | Non-Coding |
| 80. | NW_001884672 | CTTAG | 3 | 1053560 | 1053574 | 15 | 20.00% | 40.00% | 20.00% | 20.00% | Non-Coding |
| 81. | NW_001884672 | CGATA | 3 | 1062308 | 1062322 | 15 | 40.00% | 20.00% | 20.00% | 20.00% | Non-Coding |
| 82. | NW_001884672 | TGTAC | 3 | 1077779 | 1077793 | 15 | 20.00% | 40.00% | 20.00% | 20.00% | 169777565 |
| 83. | NW_001884672 | CTTCT | 3 | 1162742 | 1162756 | 15 | 0.00% | 60.00% | 0.00% | 40.00% | Non-Coding |
| 84. | NW_001884672 | CTTGT | 3 | 1225089 | 1225103 | 15 | 0.00% | 60.00% | 20.00% | 20.00% | Non-Coding |
| 85. | NW_001884672 | CAAAA | 3 | 1227841 | 1227856 | 16 | 80.00% | 0.00% | 0.00% | 20.00% | Non-Coding |
| 86. | NW_001884672 | TTGTG | 3 | 1243288 | 1243302 | 15 | 0.00% | 60.00% | 40.00% | 0.00% | Non-Coding |
| 87. | NW_001884672 | TTAAC | 3 | 1270287 | 1270300 | 14 | 40.00% | 40.00% | 0.00% | 20.00% | 317149353 |
| 88. | NW_001884672 | CATGA | 3 | 1272998 | 1273011 | 14 | 40.00% | 20.00% | 20.00% | 20.00% | 169777717 |
| 89. | NW_001884672 | GTCTT | 3 | 1320386 | 1320400 | 15 | 0.00% | 60.00% | 20.00% | 20.00% | 169777745 |
| 90. | NW_001884672 | TAACC | 4 | 1392947 | 1392966 | 20 | 40.00% | 20.00% | 0.00% | 40.00% | Non-Coding |
| 91. | NW_001884672 | TTCCC | 3 | 1394897 | 1394910 | 14 | 0.00% | 40.00% | 0.00% | 60.00% | 317149874 |
| 92. | NW_001884672 | CTTTG | 3 | 1413004 | 1413017 | 14 | 0.00% | 60.00% | 20.00% | 20.00% | 317149410 |
| 93. | NW_001884672 | TAATC | 3 | 1513825 | 1513838 | 14 | 40.00% | 40.00% | 0.00% | 20.00% | Non-Coding |
| 94. | NW_001884672 | TTCCT | 3 | 1514419 | 1514433 | 15 | 0.00% | 60.00% | 0.00% | 40.00% | Non-Coding |
| 95. | NW_001884672 | TGTCT | 3 | 1572828 | 1572843 | 16 | 0.00% | 60.00% | 20.00% | 20.00% | Non-Coding |
| 96. | NW_001884672 | TGGCT | 3 | 1574894 | 1574907 | 14 | 0.00% | 40.00% | 40.00% | 20.00% | 169777911 |
| 97. | NW_001884672 | CCAAG | 3 | 1623568 | 1623581 | 14 | 40.00% | 0.00% | 20.00% | 40.00% | Non-Coding |
| 98. | NW_001884672 | GGCAG | 3 | 1660710 | 1660723 | 14 | 20.00% | 0.00% | 60.00% | 20.00% | Non-Coding |
| 99. | NW_001884672 | GCATG | 3 | 1665702 | 1665715 | 14 | 20.00% | 20.00% | 40.00% | 20.00% | Non-Coding |
| 100. | NW_001884672 | CTACG | 3 | 1680693 | 1680707 | 15 | 20.00% | 20.00% | 20.00% | 40.00% | Non-Coding |
| 101. | NW_001884672 | GCGAT | 3 | 1694795 | 1694808 | 14 | 20.00% | 20.00% | 40.00% | 20.00% | 169777991 |
| 102. | NW_001884672 | ATTTC | 3 | 1718001 | 1718015 | 15 | 20.00% | 60.00% | 0.00% | 20.00% | 169778009 |
| 103. | NW_001884672 | ATTTT | 4 | 1740019 | 1740038 | 20 | 20.00% | 80.00% | 0.00% | 0.00% | 317149912 |
| 104. | NW_001884672 | AGAAA | 5 | 1740094 | 1740118 | 25 | 80.00% | 0.00% | 20.00% | 0.00% | 317149912 |
| 105. | NW_001884672 | TCTTT | 4 | 1780029 | 1780047 | 19 | 0.00% | 80.00% | 0.00% | 20.00% | Non-Coding |
| 106. | NW_001884672 | TTTCT | 3 | 1795393 | 1795406 | 14 | 0.00% | 80.00% | 0.00% | 20.00% | Non-Coding |
| 107. | NW_001884672 | TACGG | 3 | 1802072 | 1802086 | 15 | 20.00% | 20.00% | 40.00% | 20.00% | Non-Coding |
| 108. | NW_001884672 | ATTTT | 3 | 1803193 | 1803206 | 14 | 20.00% | 80.00% | 0.00% | 0.00% | Non-Coding |
| 109. | NW_001884672 | CAGTC | 5 | 1803409 | 1803434 | 26 | 20.00% | 20.00% | 20.00% | 40.00% | Non-Coding |
| 110. | NW_001884672 | GTTTT | 3 | 1806720 | 1806734 | 15 | 0.00% | 80.00% | 20.00% | 0.00% | Non-Coding |
| 111. | NW_001884672 | TTTGC | 3 | 1842313 | 1842326 | 14 | 0.00% | 60.00% | 20.00% | 20.00% | Non-Coding |
| 112. | NW_001884672 | TGGCG | 3 | 1864601 | 1864614 | 14 | 0.00% | 20.00% | 60.00% | 20.00% | Non-Coding |
| 113. | NW_001884672 | CTTTT | 7 | 1867008 | 1867041 | 34 | 0.00% | 80.00% | 0.00% | 20.00% | Non-Coding |
| 114. | NW_001884672 | TAAAA | 3 | 1875122 | 1875135 | 14 | 80.00% | 20.00% | 0.00% | 0.00% | Non-Coding |
| 115. | NW_001884672 | TTGAA | 3 | 1897806 | 1897820 | 15 | 40.00% | 40.00% | 20.00% | 0.00% | Non-Coding |
| 116. | NW_001884672 | TTGCT | 3 | 1902906 | 1902920 | 15 | 0.00% | 60.00% | 20.00% | 20.00% | 169778113 |
| 117. | NW_001884672 | AGCTT | 3 | 1928320 | 1928333 | 14 | 20.00% | 40.00% | 20.00% | 20.00% | Non-Coding |
| 118. | NW_001884672 | TGTAT | 4 | 1968329 | 1968348 | 20 | 20.00% | 60.00% | 20.00% | 0.00% | Non-Coding |
| 119. | NW_001884672 | ATTCA | 4 | 1984236 | 1984255 | 20 | 40.00% | 40.00% | 0.00% | 20.00% | Non-Coding |
| 120. | NW_001884672 | TCATT | 3 | 1995588 | 1995601 | 14 | 20.00% | 60.00% | 0.00% | 20.00% | Non-Coding |
| 121. | NW_001884672 | ATTGA | 3 | 2001302 | 2001316 | 15 | 40.00% | 40.00% | 20.00% | 0.00% | Non-Coding |
| 122. | NW_001884672 | TTTTC | 3 | 2123122 | 2123135 | 14 | 0.00% | 80.00% | 0.00% | 20.00% | 317149702 |
| 123. | NW_001884672 | TCAGC | 3 | 2237128 | 2237141 | 14 | 20.00% | 20.00% | 20.00% | 40.00% | Non-Coding |
| 124. | NW_001884672 | TCAAT | 3 | 2238458 | 2238471 | 14 | 40.00% | 40.00% | 0.00% | 20.00% | Non-Coding |
| 125. | NW_001884672 | TCATT | 3 | 2241481 | 2241494 | 14 | 20.00% | 60.00% | 0.00% | 20.00% | Non-Coding |
| 126. | NW_001884672 | AGTAC | 3 | 2262000 | 2262014 | 15 | 40.00% | 20.00% | 20.00% | 20.00% | Non-Coding |
| 127. | NW_001884672 | TATAA | 3 | 2272964 | 2272978 | 15 | 60.00% | 40.00% | 0.00% | 0.00% | Non-Coding |
| 128. | NW_001884672 | GAAAG | 3 | 2278255 | 2278269 | 15 | 60.00% | 0.00% | 40.00% | 0.00% | Non-Coding |
| 129. | NW_001884672 | ACCCG | 3 | 2283910 | 2283924 | 15 | 20.00% | 0.00% | 20.00% | 60.00% | Non-Coding |
| 130. | NW_001884672 | AAAGA | 4 | 2284822 | 2284841 | 20 | 80.00% | 0.00% | 20.00% | 0.00% | Non-Coding |
| 131. | NW_001884672 | CTGTA | 3 | 2304401 | 2304415 | 15 | 20.00% | 40.00% | 20.00% | 20.00% | Non-Coding |