List of
Imperfect Hexa
-nucleotide repeats in Aspergillus oryzae RIB40
| S. No. |
Genome ID |
Motif |
Iterations |
SSR Start |
SSR End |
Tract Length |
A% |
T% |
G% |
C% |
Protein ID |
| 1. | NW_001884663 | GTATGA | 3 | 1332 | 1350 | 19 | 33.33% | 33.33% | 33.33% | 0.00% | Non-Coding |
| 2. | NW_001884663 | CCCGCC | 3 | 1652 | 1670 | 19 | 0.00% | 0.00% | 16.67% | 83.33% | 317141402 |
| 3. | NW_001884663 | ACCCTA | 3 | 68118 | 68136 | 19 | 33.33% | 16.67% | 0.00% | 50.00% | Non-Coding |
| 4. | NW_001884663 | GAGGGT | 3 | 143313 | 143330 | 18 | 16.67% | 16.67% | 66.67% | 0.00% | 169768314 |
| 5. | NW_001884663 | TTTCTC | 3 | 193352 | 193369 | 18 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 6. | NW_001884663 | TGGAAT | 3 | 214202 | 214220 | 19 | 33.33% | 33.33% | 33.33% | 0.00% | 317143013 |
| 7. | NW_001884663 | CTTTTT | 3 | 218231 | 218247 | 17 | 0.00% | 83.33% | 0.00% | 16.67% | Non-Coding |
| 8. | NW_001884663 | GATATC | 3 | 230647 | 230664 | 18 | 33.33% | 33.33% | 16.67% | 16.67% | Non-Coding |
| 9. | NW_001884663 | AGCAAC | 3 | 254519 | 254536 | 18 | 50.00% | 0.00% | 16.67% | 33.33% | 169768392 |
| 10. | NW_001884663 | ATTTTT | 3 | 337476 | 337493 | 18 | 16.67% | 83.33% | 0.00% | 0.00% | Non-Coding |
| 11. | NW_001884663 | GTCAAT | 3 | 347061 | 347078 | 18 | 33.33% | 33.33% | 16.67% | 16.67% | 169768470 |
| 12. | NW_001884663 | GAGGCG | 3 | 362301 | 362318 | 18 | 16.67% | 0.00% | 66.67% | 16.67% | 169768480 |
| 13. | NW_001884663 | TCTTTT | 8 | 365040 | 365085 | 46 | 0.00% | 83.33% | 0.00% | 16.67% | Non-Coding |
| 14. | NW_001884663 | TCCTCT | 3 | 399052 | 399069 | 18 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 15. | NW_001884663 | CATCCC | 3 | 407800 | 407817 | 18 | 16.67% | 16.67% | 0.00% | 66.67% | 317141594 |
| 16. | NW_001884663 | AAAATA | 3 | 412909 | 412926 | 18 | 83.33% | 16.67% | 0.00% | 0.00% | 317141594 |
| 17. | NW_001884663 | ATATAG | 3 | 435433 | 435451 | 19 | 50.00% | 33.33% | 16.67% | 0.00% | Non-Coding |
| 18. | NW_001884663 | AAAAGA | 3 | 452811 | 452829 | 19 | 83.33% | 0.00% | 16.67% | 0.00% | Non-Coding |
| 19. | NW_001884663 | CGCACA | 3 | 513601 | 513618 | 18 | 33.33% | 0.00% | 16.67% | 50.00% | Non-Coding |
| 20. | NW_001884663 | GAGCCA | 4 | 521812 | 521835 | 24 | 33.33% | 0.00% | 33.33% | 33.33% | 169768592 |
| 21. | NW_001884663 | TGTACA | 4 | 538387 | 538409 | 23 | 33.33% | 33.33% | 16.67% | 16.67% | Non-Coding |
| 22. | NW_001884663 | TTTTTG | 3 | 551733 | 551750 | 18 | 0.00% | 83.33% | 16.67% | 0.00% | Non-Coding |
| 23. | NW_001884663 | GCTCGC | 3 | 582563 | 582580 | 18 | 0.00% | 16.67% | 33.33% | 50.00% | 317141674 |
| 24. | NW_001884663 | TAGCAT | 3 | 584624 | 584641 | 18 | 33.33% | 33.33% | 16.67% | 16.67% | 317141676 |
| 25. | NW_001884663 | CCACGG | 3 | 587216 | 587233 | 18 | 16.67% | 0.00% | 33.33% | 50.00% | 317141680 |
| 26. | NW_001884663 | TCTCTT | 3 | 592854 | 592871 | 18 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 27. | NW_001884663 | TCTCCT | 3 | 596746 | 596763 | 18 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 28. | NW_001884663 | TTGTCA | 3 | 627567 | 627584 | 18 | 16.67% | 50.00% | 16.67% | 16.67% | Non-Coding |
| 29. | NW_001884663 | CTCCTT | 3 | 712367 | 712385 | 19 | 0.00% | 50.00% | 0.00% | 50.00% | 317141740 |
| 30. | NW_001884663 | GGAAAG | 3 | 713658 | 713674 | 17 | 50.00% | 0.00% | 50.00% | 0.00% | Non-Coding |
| 31. | NW_001884663 | TAAAAG | 3 | 745071 | 745089 | 19 | 66.67% | 16.67% | 16.67% | 0.00% | Non-Coding |
| 32. | NW_001884663 | ATGTAC | 4 | 748533 | 748556 | 24 | 33.33% | 33.33% | 16.67% | 16.67% | Non-Coding |
| 33. | NW_001884663 | AAGAGG | 3 | 774382 | 774399 | 18 | 50.00% | 0.00% | 50.00% | 0.00% | 317141874 |
| 34. | NW_001884663 | TCCCTT | 3 | 774455 | 774472 | 18 | 0.00% | 50.00% | 0.00% | 50.00% | 317141874 |
| 35. | NW_001884663 | TGGGGT | 3 | 774477 | 774493 | 17 | 0.00% | 33.33% | 66.67% | 0.00% | 317141874 |
| 36. | NW_001884663 | CCCAAA | 3 | 783145 | 783162 | 18 | 50.00% | 0.00% | 0.00% | 50.00% | Non-Coding |
| 37. | NW_001884663 | GAGCCG | 3 | 817581 | 817598 | 18 | 16.67% | 0.00% | 50.00% | 33.33% | 317141927 |
| 38. | NW_001884663 | CACGAT | 4 | 842410 | 842433 | 24 | 33.33% | 16.67% | 16.67% | 33.33% | 317142063 |
| 39. | NW_001884663 | TCCCTG | 5 | 842589 | 842618 | 30 | 0.00% | 33.33% | 16.67% | 50.00% | 317142063 |
| 40. | NW_001884663 | TCCCGA | 3 | 842760 | 842777 | 18 | 16.67% | 16.67% | 16.67% | 50.00% | 317142063 |
| 41. | NW_001884663 | AGGCGG | 3 | 843260 | 843277 | 18 | 16.67% | 0.00% | 66.67% | 16.67% | 317142063 |
| 42. | NW_001884663 | TATTTT | 4 | 881592 | 881615 | 24 | 16.67% | 83.33% | 0.00% | 0.00% | Non-Coding |
| 43. | NW_001884663 | TCTTGT | 5 | 881788 | 881818 | 31 | 0.00% | 66.67% | 16.67% | 16.67% | Non-Coding |
| 44. | NW_001884663 | TTTCCT | 3 | 885661 | 885677 | 17 | 0.00% | 66.67% | 0.00% | 33.33% | Non-Coding |
| 45. | NW_001884663 | GGAGAG | 3 | 897917 | 897933 | 17 | 33.33% | 0.00% | 66.67% | 0.00% | Non-Coding |
| 46. | NW_001884663 | AATCCA | 5 | 904535 | 904563 | 29 | 50.00% | 16.67% | 0.00% | 33.33% | Non-Coding |
| 47. | NW_001884663 | AAAAAG | 3 | 911934 | 911952 | 19 | 83.33% | 0.00% | 16.67% | 0.00% | Non-Coding |
| 48. | NW_001884663 | GTTTTC | 3 | 913833 | 913850 | 18 | 0.00% | 66.67% | 16.67% | 16.67% | Non-Coding |
| 49. | NW_001884663 | TTTTTG | 3 | 915387 | 915405 | 19 | 0.00% | 83.33% | 16.67% | 0.00% | Non-Coding |
| 50. | NW_001884663 | ATTTTT | 3 | 915439 | 915456 | 18 | 16.67% | 83.33% | 0.00% | 0.00% | Non-Coding |
| 51. | NW_001884663 | GTAATA | 3 | 946254 | 946272 | 19 | 50.00% | 33.33% | 16.67% | 0.00% | Non-Coding |
| 52. | NW_001884663 | TCATCG | 4 | 1031693 | 1031716 | 24 | 16.67% | 33.33% | 16.67% | 33.33% | 317142475 |
| 53. | NW_001884663 | TTGGTT | 3 | 1037816 | 1037839 | 24 | 0.00% | 66.67% | 33.33% | 0.00% | 317142475 |
| 54. | NW_001884663 | CTTTTT | 3 | 1043263 | 1043280 | 18 | 0.00% | 83.33% | 0.00% | 16.67% | Non-Coding |
| 55. | NW_001884663 | GATGTT | 3 | 1052592 | 1052609 | 18 | 16.67% | 50.00% | 33.33% | 0.00% | 169768934 |
| 56. | NW_001884663 | TCTGGA | 3 | 1066703 | 1066720 | 18 | 16.67% | 33.33% | 33.33% | 16.67% | 317142549 |
| 57. | NW_001884663 | AGCTCG | 3 | 1068546 | 1068564 | 19 | 16.67% | 16.67% | 33.33% | 33.33% | 169768952 |
| 58. | NW_001884663 | TTCTGA | 3 | 1094160 | 1094177 | 18 | 16.67% | 50.00% | 16.67% | 16.67% | Non-Coding |
| 59. | NW_001884663 | GCAGCT | 3 | 1100677 | 1100694 | 18 | 16.67% | 16.67% | 33.33% | 33.33% | Non-Coding |
| 60. | NW_001884663 | AGAAAA | 3 | 1100870 | 1100887 | 18 | 83.33% | 0.00% | 16.67% | 0.00% | Non-Coding |
| 61. | NW_001884663 | ATAAAT | 3 | 1110448 | 1110466 | 19 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 62. | NW_001884663 | CTTTTT | 3 | 1111719 | 1111736 | 18 | 0.00% | 83.33% | 0.00% | 16.67% | Non-Coding |
| 63. | NW_001884663 | AGAAAA | 3 | 1111854 | 1111872 | 19 | 83.33% | 0.00% | 16.67% | 0.00% | Non-Coding |
| 64. | NW_001884663 | ATAGCA | 3 | 1153905 | 1153921 | 17 | 50.00% | 16.67% | 16.67% | 16.67% | Non-Coding |
| 65. | NW_001884663 | CTCTTC | 4 | 1232922 | 1232945 | 24 | 0.00% | 50.00% | 0.00% | 50.00% | 317142644 |
| 66. | NW_001884663 | AGACCA | 3 | 1235786 | 1235804 | 19 | 50.00% | 0.00% | 16.67% | 33.33% | Non-Coding |
| 67. | NW_001884663 | AAAAAT | 4 | 1253598 | 1253621 | 24 | 83.33% | 16.67% | 0.00% | 0.00% | Non-Coding |
| 68. | NW_001884663 | ACTTGA | 3 | 1268959 | 1268975 | 17 | 33.33% | 33.33% | 16.67% | 16.67% | Non-Coding |
| 69. | NW_001884663 | CATCCT | 3 | 1272316 | 1272333 | 18 | 16.67% | 33.33% | 0.00% | 50.00% | 169769078 |
| 70. | NW_001884663 | CAGCCG | 4 | 1272613 | 1272636 | 24 | 16.67% | 0.00% | 33.33% | 50.00% | 169769078 |
| 71. | NW_001884663 | TGGAAC | 3 | 1326837 | 1326854 | 18 | 33.33% | 16.67% | 33.33% | 16.67% | 317142690 |
| 72. | NW_001884663 | TATCTT | 4 | 1334965 | 1334988 | 24 | 16.67% | 66.67% | 0.00% | 16.67% | 317142692 |
| 73. | NW_001884663 | TTTGTT | 3 | 1347382 | 1347399 | 18 | 0.00% | 83.33% | 16.67% | 0.00% | Non-Coding |
| 74. | NW_001884663 | GAGGAT | 5 | 1352305 | 1352334 | 30 | 33.33% | 16.67% | 50.00% | 0.00% | 169769120 |
| 75. | NW_001884663 | TCTTCC | 3 | 1360339 | 1360356 | 18 | 0.00% | 50.00% | 0.00% | 50.00% | 317142703 |
| 76. | NW_001884663 | ATTCTC | 4 | 1370535 | 1370558 | 24 | 16.67% | 50.00% | 0.00% | 33.33% | 317142707 |
| 77. | NW_001884663 | GGGAAT | 3 | 1370560 | 1370578 | 19 | 33.33% | 16.67% | 50.00% | 0.00% | 317142707 |
| 78. | NW_001884663 | TGAGTA | 3 | 1370584 | 1370601 | 18 | 33.33% | 33.33% | 33.33% | 0.00% | 317142707 |
| 79. | NW_001884663 | GAGGTA | 3 | 1421441 | 1421458 | 18 | 33.33% | 16.67% | 50.00% | 0.00% | 169769170 |
| 80. | NW_001884663 | GACTGG | 3 | 1426244 | 1426261 | 18 | 16.67% | 16.67% | 50.00% | 16.67% | 317142731 |
| 81. | NW_001884663 | TCCTCA | 3 | 1443742 | 1443759 | 18 | 16.67% | 33.33% | 0.00% | 50.00% | 317142741 |
| 82. | NW_001884663 | AGAAGT | 3 | 1444360 | 1444377 | 18 | 50.00% | 16.67% | 33.33% | 0.00% | 317142741 |
| 83. | NW_001884663 | CAGAAG | 3 | 1449136 | 1449153 | 18 | 50.00% | 0.00% | 33.33% | 16.67% | 317142744 |
| 84. | NW_001884663 | GCTCCT | 3 | 1466212 | 1466229 | 18 | 0.00% | 33.33% | 16.67% | 50.00% | 317142753 |
| 85. | NW_001884663 | CCGCGC | 4 | 1496089 | 1496112 | 24 | 0.00% | 0.00% | 33.33% | 66.67% | 317142764 |
| 86. | NW_001884663 | AACACC | 3 | 1502642 | 1502659 | 18 | 50.00% | 0.00% | 0.00% | 50.00% | 169769224 |
| 87. | NW_001884663 | GAAAAA | 3 | 1508162 | 1508179 | 18 | 83.33% | 0.00% | 16.67% | 0.00% | Non-Coding |
| 88. | NW_001884663 | CTGCTC | 4 | 1516801 | 1516824 | 24 | 0.00% | 33.33% | 16.67% | 50.00% | 317142778 |
| 89. | NW_001884663 | CCGCTC | 4 | 1516813 | 1516836 | 24 | 0.00% | 16.67% | 16.67% | 66.67% | 317142778 |
| 90. | NW_001884663 | TCCTGC | 4 | 1516847 | 1516870 | 24 | 0.00% | 33.33% | 16.67% | 50.00% | 317142778 |
| 91. | NW_001884663 | GACGCA | 5 | 1538228 | 1538257 | 30 | 33.33% | 0.00% | 33.33% | 33.33% | 169769250 |
| 92. | NW_001884663 | AGCCTG | 3 | 1548274 | 1548291 | 18 | 16.67% | 16.67% | 33.33% | 33.33% | 169769258 |
| 93. | NW_001884663 | TTTTAT | 3 | 1573182 | 1573199 | 18 | 16.67% | 83.33% | 0.00% | 0.00% | Non-Coding |
| 94. | NW_001884663 | TATTTT | 3 | 1573194 | 1573211 | 18 | 16.67% | 83.33% | 0.00% | 0.00% | Non-Coding |
| 95. | NW_001884663 | TTTTTA | 6 | 1573206 | 1573247 | 42 | 16.67% | 83.33% | 0.00% | 0.00% | Non-Coding |
| 96. | NW_001884663 | ATAAAT | 4 | 1574013 | 1574036 | 24 | 66.67% | 33.33% | 0.00% | 0.00% | Non-Coding |
| 97. | NW_001884663 | AAAATA | 3 | 1575365 | 1575383 | 19 | 83.33% | 16.67% | 0.00% | 0.00% | Non-Coding |
| 98. | NW_001884663 | AAAAGA | 9 | 1575607 | 1575657 | 51 | 83.33% | 0.00% | 16.67% | 0.00% | Non-Coding |
| 99. | NW_001884663 | AAAGAA | 6 | 1575647 | 1575681 | 35 | 83.33% | 0.00% | 16.67% | 0.00% | Non-Coding |
| 100. | NW_001884663 | TCTTTT | 4 | 1585148 | 1585171 | 24 | 0.00% | 83.33% | 0.00% | 16.67% | Non-Coding |
| 101. | NW_001884663 | TTTTTA | 3 | 1585206 | 1585224 | 19 | 16.67% | 83.33% | 0.00% | 0.00% | Non-Coding |
| 102. | NW_001884663 | GATGAG | 3 | 1612066 | 1612083 | 18 | 33.33% | 16.67% | 50.00% | 0.00% | 169769294 |
| 103. | NW_001884663 | GACGAA | 4 | 1612261 | 1612284 | 24 | 50.00% | 0.00% | 33.33% | 16.67% | 169769294 |
| 104. | NW_001884663 | CGTGGC | 3 | 1639960 | 1639977 | 18 | 0.00% | 16.67% | 50.00% | 33.33% | 169769314 |
| 105. | NW_001884663 | CTGGAC | 3 | 1662992 | 1663009 | 18 | 16.67% | 16.67% | 33.33% | 33.33% | Non-Coding |
| 106. | NW_001884663 | TGGTGA | 3 | 1676556 | 1676574 | 19 | 16.67% | 33.33% | 50.00% | 0.00% | 317142855 |
| 107. | NW_001884663 | TATGGG | 4 | 1679603 | 1679626 | 24 | 16.67% | 33.33% | 50.00% | 0.00% | Non-Coding |
| 108. | NW_001884663 | CCCTTT | 3 | 1722607 | 1722625 | 19 | 0.00% | 50.00% | 0.00% | 50.00% | 169769364 |
| 109. | NW_001884663 | CGTCCT | 3 | 1723227 | 1723244 | 18 | 0.00% | 33.33% | 16.67% | 50.00% | 169769364 |
| 110. | NW_001884663 | TTCGTC | 3 | 1736098 | 1736115 | 18 | 0.00% | 50.00% | 16.67% | 33.33% | 317142880 |
| 111. | NW_001884663 | GGATGA | 3 | 1761031 | 1761048 | 18 | 33.33% | 16.67% | 50.00% | 0.00% | 169769396 |
| 112. | NW_001884663 | CTACAC | 4 | 1772649 | 1772672 | 24 | 33.33% | 16.67% | 0.00% | 50.00% | 317142896 |
| 113. | NW_001884663 | CTGCAC | 4 | 1772661 | 1772684 | 24 | 16.67% | 16.67% | 16.67% | 50.00% | 317142896 |
| 114. | NW_001884663 | GCAAAA | 3 | 1801246 | 1801263 | 18 | 66.67% | 0.00% | 16.67% | 16.67% | Non-Coding |
| 115. | NW_001884663 | TGACGA | 3 | 1808740 | 1808757 | 18 | 33.33% | 16.67% | 33.33% | 16.67% | Non-Coding |
| 116. | NW_001884663 | TTGTTC | 3 | 1809918 | 1809935 | 18 | 0.00% | 66.67% | 16.67% | 16.67% | Non-Coding |
| 117. | NW_001884663 | TTTTTA | 5 | 1809954 | 1809983 | 30 | 16.67% | 83.33% | 0.00% | 0.00% | Non-Coding |
| 118. | NW_001884663 | AGAAAA | 3 | 1821472 | 1821490 | 19 | 83.33% | 0.00% | 16.67% | 0.00% | Non-Coding |
| 119. | NW_001884663 | CTTTTT | 4 | 1827663 | 1827687 | 25 | 0.00% | 83.33% | 0.00% | 16.67% | Non-Coding |
| 120. | NW_001884663 | GAAAAA | 3 | 1832817 | 1832834 | 18 | 83.33% | 0.00% | 16.67% | 0.00% | Non-Coding |
| 121. | NW_001884663 | ATAAAA | 4 | 1850652 | 1850675 | 24 | 83.33% | 16.67% | 0.00% | 0.00% | Non-Coding |
| 122. | NW_001884663 | AAAAAT | 4 | 1850670 | 1850693 | 24 | 83.33% | 16.67% | 0.00% | 0.00% | Non-Coding |
| 123. | NW_001884663 | AAAAAG | 3 | 1857421 | 1857438 | 18 | 83.33% | 0.00% | 16.67% | 0.00% | Non-Coding |
| 124. | NW_001884663 | ATTTTT | 3 | 1872696 | 1872712 | 17 | 16.67% | 83.33% | 0.00% | 0.00% | Non-Coding |
| 125. | NW_001884663 | AGAAAA | 5 | 1880944 | 1880974 | 31 | 83.33% | 0.00% | 16.67% | 0.00% | Non-Coding |
| 126. | NW_001884663 | GGCTGA | 3 | 1881540 | 1881558 | 19 | 16.67% | 16.67% | 50.00% | 16.67% | 169769464 |
| 127. | NW_001884663 | TTTTCT | 4 | 1903526 | 1903549 | 24 | 0.00% | 83.33% | 0.00% | 16.67% | Non-Coding |
| 128. | NW_001884663 | GAAAAT | 4 | 1939318 | 1939341 | 24 | 66.67% | 16.67% | 16.67% | 0.00% | Non-Coding |
| 129. | NW_001884663 | TTTTCT | 3 | 1939470 | 1939487 | 18 | 0.00% | 83.33% | 0.00% | 16.67% | Non-Coding |
| 130. | NW_001884663 | ACTTAC | 3 | 1956470 | 1956487 | 18 | 33.33% | 33.33% | 0.00% | 33.33% | Non-Coding |
| 131. | NW_001884663 | CTTTCC | 3 | 1981210 | 1981228 | 19 | 0.00% | 50.00% | 0.00% | 50.00% | Non-Coding |
| 132. | NW_001884663 | ACCTCA | 3 | 1983836 | 1983853 | 18 | 33.33% | 16.67% | 0.00% | 50.00% | 317142988 |
| 133. | NW_001884663 | ATTTTT | 3 | 1995121 | 1995138 | 18 | 16.67% | 83.33% | 0.00% | 0.00% | Non-Coding |
| 134. | NW_001884663 | TATTTT | 3 | 2004267 | 2004285 | 19 | 16.67% | 83.33% | 0.00% | 0.00% | Non-Coding |
| 135. | NW_001884663 | TAGTAT | 4 | 2004517 | 2004538 | 22 | 33.33% | 50.00% | 16.67% | 0.00% | Non-Coding |
| 136. | NW_001884663 | AATAAA | 3 | 2004692 | 2004710 | 19 | 83.33% | 16.67% | 0.00% | 0.00% | Non-Coding |