ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

Back To Motif Summary

Chloroplast Motifs - Imperfect CATT Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_013086CATT814308114311232 Selaginella moellendorffii plastid
2NC_014346CATT529045529047521Floydiella terrestris chloroplast
3NC_014675CATT4182951830915Isoetes flaccida chloroplast
4NC_016065CATT4577835779816Taiwania cryptomerioides chloroplast DNA
5NC_021423CATT4318713188616Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
6NC_021441CATT4578085782316Taiwania flousiana chloroplast
7NC_007407CATT411212615 Acorus calamus plastid
8NC_008235CATT4950319504515 Populus alba chloroplast
9NC_009143CATT4955529556615 Populus trichocarpa chloroplast
10NC_009618CATT42978299316 Cycas taitungensis chloroplast
11NC_010093CATT415360315361715 Acorus americanus chloroplast
12NC_011087CATT321759121760111Paulinella chromatophora chromatophore
13NC_014267CATT3700117002212Kryptoperidinium foliaceum chloroplast
14NC_014346CATT341661441662512Floydiella terrestris chloroplast
15NC_014348CATT3205752058511Pteridium aquilinum subsp. aquilinum chloroplast
16NC_014569CATT3664016641212Erodium texanum plastid
17NC_014570CATT34216422712Eucalyptus grandis chloroplast
18NC_014573CATT3317993181012Geranium palmatum plastid
19NC_014573CATT314035014036213Geranium palmatum plastid
20NC_014592CATT3983279833711Cheilanthes lindheimeri chloroplast
21NC_014674CATT32754276512Castanea mollissima chloroplast
22NC_014675CATT3289752898612Isoetes flaccida chloroplast
23NC_014675CATT3674266743611Isoetes flaccida chloroplast
24NC_014676CATT313125613126712Theobroma cacao chloroplast
25NC_014697CATT312853312854412Prunus persica chloroplast
26NC_014807CATT34190420112Corynocarpus laevigata chloroplast
27NC_014807CATT313070913072012Corynocarpus laevigata chloroplast
28NC_014874CATT3373013731212Rhizanthella gardneri plastid
29NC_015083CATT3263022631312Erodium carvifolium chloroplast
30NC_015204CATT313088313089412Gossypium thurberi chloroplast
31NC_015308CATT313189313190412Hevea brasiliensis chloroplast
32NC_015401CATT34149416012Olea europaea subsp. europaea plastid
33NC_015401CATT312736512737612Olea europaea subsp. europaea plastid
34NC_015402CATT3947729478312Ptilidium pulcherrimum chloroplast
35NC_015604CATT34149416012Olea europaea subsp. cuspidata chloroplast
36NC_015604CATT312736312737412Olea europaea subsp. cuspidata chloroplast
37NC_015608CATT34146415712Olea woodiana subsp. woodiana chloroplast
38NC_015608CATT312745812746912Olea woodiana subsp. woodiana chloroplast
39NC_015623CATT34149416012Olea europaea subsp. maroccana chloroplast
40NC_015623CATT312738612739712Olea europaea subsp. maroccana chloroplast
41NC_015803CATT313924613925611Indocalamus longiauritus plastid
42NC_015817CATT313925713926711Phyllostachys edulis chloroplast
43NC_015820CATT313927713928711Acidosasa purpurea chloroplast
44NC_015826CATT313941713942711Phyllostachys nigra var. henonis chloroplast
45NC_015830CATT313906613907611Bambusa emeiensis chloroplast
46NC_015831CATT313904713905711Ferrocalamus rimosivaginus plastid
47NC_015891CATT313962413963512Spirodela polyrhiza chloroplast
48NC_015892CATT313073213074312Magnolia kwangsiensis chloroplast
49NC_015894CATT33928393912Wolffiella lingulata chloroplast
50NC_015894CATT314029614030712Wolffiella lingulata chloroplast
51NC_015899CATT33985399612Wolffia australiana chloroplast
52NC_015899CATT313947513948612Wolffia australiana chloroplast
53NC_015983CATT33928393912Cucumis melo subsp. melo chloroplast
54NC_015990CATT3606286063811Panicum virgatum chloroplast
55NC_015990CATT313920513921511Panicum virgatum chloroplast
56NC_015996CATT313062813063912Pyrus pyrifolia chloroplast
57NC_016058CATT3760697608012Larix decidua chloroplast
58NC_016064CATT310731010732112Pseudotsuga sinensis var. wilsoniana chloroplast
59NC_016068CATT34154416512Nicotiana undulata chloroplast
60NC_016069CATT3211862119712Picea morrisonicola chloroplast
61NC_016430CATT312513511Eleutherococcus senticosus chloroplast
62NC_016430CATT34070408112Eleutherococcus senticosus chloroplast
63NC_016433CATT33987399812Sesamum indicum chloroplast
64NC_016433CATT311388711389812Sesamum indicum chloroplast
65NC_016433CATT312370412371411Sesamum indicum chloroplast
66NC_016433CATT312544412545512Sesamum indicum chloroplast
67NC_016468CATT33866387712Boea hygrometrica chloroplast
68NC_016468CATT312516812517912Boea hygrometrica chloroplast
69NC_016677CATT33713372412Leersia tisserantii plastid
70NC_016677CATT313613013614011Leersia tisserantii plastid
71NC_016699CATT313928213929211Phyllostachys propinqua chloroplast
72NC_016708CATT32753276412Millettia pinnata chloroplast
73NC_016718CATT33686369712Rhynchoryza subulata plastid
74NC_016718CATT313588213589211Rhynchoryza subulata plastid
75NC_016731CATT3973709738011Synedra acus chloroplast
76NC_016736CATT313156113157212Ricinus communis chloroplast
77NC_016736CATT313309313310412Ricinus communis chloroplast
78NC_016753CATT3348353484612Colocasia esculenta chloroplast
79NC_016753CATT313315413316512Colocasia esculenta chloroplast
80NC_016921CATT312746012747112Pentactina rupicola chloroplast
81NC_016927CATT33700371112Oryza meridionalis chloroplast
82NC_016927CATT313413413414411Oryza meridionalis chloroplast
83NC_017006CATT3104621047211Mankyua chejuensis chloroplast
84NC_017006CATT3240812409212Mankyua chejuensis chloroplast
85NC_017602CATT3146161462712Elaeis guineensis chloroplast
86NC_017602CATT3321583216912Elaeis guineensis chloroplast
87NC_017602CATT315647715648711Elaeis guineensis chloroplast
88NC_017609CATT311939511940612Phalaenopsis equestris chloroplast
89NC_017609CATT314833314834311Phalaenopsis equestris chloroplast
90NC_017835CATT33700371112Oryza rufipogon chloroplast
91NC_017835CATT313412013413011Oryza rufipogon chloroplast
92NC_018114CATT311545611546712Erycina pusilla chloroplast
93NC_018114CATT314257314258311Erycina pusilla chloroplast
94NC_018117CATT34091410212Datura stramonium chloroplast
95NC_018357CATT313096113097212Magnolia denudata chloroplast
96NC_018523CATT3398713988111Saccharina japonica chloroplast
97NC_018523CATT3898258983612Saccharina japonica chloroplast
98NC_018541CATT310902710903711Elodea canadensis chloroplast
99NC_018552CATT34152416312Capsicum annuum chloroplast
100NC_019616CATT32726273712Vaccinium macrocarpon plastid
101NC_019616CATT3804908050112Vaccinium macrocarpon plastid
102NC_019616CATT317490317491311Vaccinium macrocarpon plastid
103NC_019651CATT310188910189911Lolium multiflorum plastid
104NC_020019CATT3278132782412Camellia sinensis chloroplast
105NC_020092CATT312579012580011Chrysanthemum x morifolium chloroplast
106NC_020098CATT34071408212Tectona grandis chloroplast
107NC_020098CATT312575012576112Tectona grandis chloroplast
108NC_020147CATT3672546726411Ophioglossum californicum chloroplast
109NC_020152CATT32781279212Quercus rubra plastid
110NC_020316CATT313110413111512Magnolia officinalis chloroplast
111NC_020317CATT313105313106412Magnolia officinalis subsp. biloba voucher SC001 chloroplast
112NC_020318CATT313060613061712Magnolia grandiflora voucher NJ016 chloroplast
113NC_020320CATT312574312575311Chrysanthemum indicum voucher HeN001 chloroplast
114NC_020341CATT313851213852211Arundinaria gigantea chloroplast
115NC_020361CATT3111071111812Podocarpus totara chloroplast
116NC_020361CATT311707811708912Podocarpus totara chloroplast
117NC_020361CATT312663612664712Podocarpus totara chloroplast
118NC_020362CATT3160721608312Heliconia collinsiana plastid
119NC_020362CATT311507711508711Heliconia collinsiana plastid
120NC_020362CATT313276713277812Heliconia collinsiana plastid
121NC_020362CATT316175816176811Heliconia collinsiana plastid
122NC_020363CATT3143061431712Zingiber spectabile plastid
123NC_020363CATT311030811031811Zingiber spectabile plastid
124NC_020363CATT312739512740612Zingiber spectabile plastid
125NC_020363CATT315566715567711Zingiber spectabile plastid
126NC_020364CATT3143881439912Pseudophoenix vinifera plastid
127NC_020364CATT3321203213112Pseudophoenix vinifera plastid
128NC_020364CATT315737115738111Pseudophoenix vinifera plastid
129NC_020365CATT3140461405712Calamus caryotoides plastid
130NC_020365CATT3319703198112Calamus caryotoides plastid
131NC_020365CATT312775712776812Calamus caryotoides plastid
132NC_020365CATT315677215678211Calamus caryotoides plastid
133NC_020366CATT3144191443012Bismarckia nobilis plastid
134NC_020366CATT3327293274012Bismarckia nobilis plastid
135NC_020366CATT315783115784111Bismarckia nobilis plastid
136NC_020367CATT3146431465412Dasypogon bromeliifolius plastid
137NC_020367CATT312823812824912Dasypogon bromeliifolius plastid
138NC_020367CATT315744615745611Dasypogon bromeliifolius plastid
139NC_020431CATT34011402212Salvia miltiorrhiza chloroplast
140NC_021101CATT3268132682412Francoa sonchifolia plastid
141NC_021101CATT312808412809512Francoa sonchifolia plastid
142NC_021110CATT313174213175413Cephalotaxus oliveri chloroplast
143NC_021121CATT34119413012Ardisia polysticta chloroplast
144NC_021121CATT3272522726312Ardisia polysticta chloroplast
145NC_021372CATT314164714165711Pharus latifolius chloroplast
146NC_021423CATT34061407212Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
147NC_021423CATT312680012681112Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
148NC_021426CATT313282113283212Trochodendron aralioides chloroplast
149NC_021429CATT312754512755612Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
150NC_021429CATT315633015634011Cymbidium aloifolium voucher KUN:YJB100604 chloroplast
151NC_021430CATT312620912622012Cymbidium sinense voucher KUN:YJB100605 chloroplast
152NC_021430CATT315497415498411Cymbidium sinense voucher KUN:YJB100605 chloroplast
153NC_021431CATT312629612630712Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
154NC_021431CATT315505315506311Cymbidium tortisepalum voucher KUN:HJL091027 chloroplast
155NC_021432CATT312693212694312Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
156NC_021432CATT315573815574811Cymbidium tracyanum voucher KUN:YJB100606 chloroplast
157NC_021433CATT312633812634912Cymbidium mannii voucher KUN:YJB100602 chloroplast
158NC_021433CATT315472415473411Cymbidium mannii voucher KUN:YJB100602 chloroplast
159NC_021437CATT3834488345912Cunninghamia lanceolata chloroplast
160NC_021449CATT32382239211Utricularia gibba chloroplast
161NC_021449CATT33597360913Utricularia gibba chloroplast
162NC_021455CATT312713812714912Prinsepia utilis plastid
163NC_021636CATT31557156913Glycine tomentella voucher CSIRO:G1403 chloroplast
164NC_021636CATT312600812601811Glycine tomentella voucher CSIRO:G1403 chloroplast
165NC_021645CATT312571912572911Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
166NC_021646CATT312602912603911Glycine stenophita voucher CSIRO:G1974 chloroplast
167NC_021647CATT31557156913Glycine canescens voucher CSIRO:G1232 chloroplast
168NC_021647CATT312581112582111Glycine canescens voucher CSIRO:G1232 chloroplast
169NC_021648CATT31557156913Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
170NC_021648CATT312605612606611Glycine dolichocarpa voucher CSIRO:G1134 chloroplast
171NC_021649CATT31566157813Glycine falcata voucher CSIRO:G1718 chloroplast
172NC_021649CATT312629112630111Glycine falcata voucher CSIRO:G1718 chloroplast
173NC_021650CATT31557156913Glycine syndetika voucher CSIRO:G1300 chloroplast
174NC_021650CATT312607112608111Glycine syndetika voucher CSIRO:G1300 chloroplast
175NC_021760CATT33707371812Triticum monococcum chloroplast
176NC_021762CATT33707371812Triticum urartu chloroplast
177NC_022099CATT3897088971912Medicago truncatula cultivar Jemalong 2HA plastid
178NC_022100CATT3895078951812Medicago truncatula cultivar Borung plastid
179NC_022133CATT33717372812Aegilops tauschii chloroplast
180NC_000925CATT316065416066512 Porphyra purpurea chloroplast
181NC_001319CATT3957299574012 Marchantia polymorpha chloroplast
182NC_001320CATT33699371012 Oryza sativa Japonica Group plastid
183NC_001320CATT313410113411111 Oryza sativa Japonica Group plastid
184NC_001603CATT3937359374612 Euglena gracilis chloroplast
185NC_001840CATT3508055081511 Cyanidium caldarium chloroplast
186NC_001840CATT314850114851111 Cyanidium caldarium chloroplast
187NC_001879CATT34149416012 Nicotiana tabacum plastid
188NC_002693CATT313801713802711 Oenothera elata subsp. hookeri plastid plastome I
189NC_002694CATT32811282212 Lotus japonicus chloroplast
190NC_003119CATT3897088971912 Medicago truncatula chloroplast
191NC_004561CATT34100411112 Atropa belladonna chloroplast
192NC_004677CATT3777677777812 Pinus koraiensis chloroplast
193NC_004799CATT313658913660113 Cyanidioschyzon merolae strain 10D chloroplast
194NC_004823CATT3240242403411 Eimeria tenella strain Penn State apicoplast
195NC_005086CATT313396013397112 Amborella trichopoda chloroplast
196NC_005973CATT33698370912 Oryza nivara chloroplast
197NC_005973CATT313406913407911 Oryza nivara chloroplast
198NC_006050CATT3231842319512 Nymphaea alba chloroplast
199NC_006050CATT313086113087212 Nymphaea alba chloroplast
200NC_006137CATT312922112923212 Gracilaria tenuistipitata var. liui chloroplast
201NC_006290CATT312613611 Panax ginseng chloroplast
202NC_006290CATT34075408612 Panax ginseng chloroplast
203NC_006861CATT3966949670512 Huperzia lucidula chloroplast
204NC_007407CATT37520753011 Acorus calamus plastid
205NC_007499CATT311949611950712 Phalaenopsis aphrodite subsp. formosana chloroplast
206NC_007499CATT314831914832911 Phalaenopsis aphrodite subsp. formosana chloroplast
207NC_007500CATT34149416012 Nicotiana sylvestris chloroplast
208NC_007602CATT34121413212 Nicotiana tomentosiformis chloroplast
209NC_007932CATT3806468065611 Porphyra yezoensis chloroplast
210NC_007932CATT312590212591211 Porphyra yezoensis chloroplast
211NC_007942CATT312547712548711 Glycine max chloroplast
212NC_007957CATT313184713185812 Vitis vinifera chloroplast
213NC_008097CATT317186817187811 Chara vulgaris chloroplast
214NC_008101CATT312728812729912 Scenedesmus obliquus chloroplast
215NC_008114CATT3653976540711 Pseudendoclonium akinetum chloroplast
216NC_008115CATT34267427812 Eucalyptus globulus subsp. globulus chloroplast
217NC_008116CATT3601216013212 Staurastrum punctulatum chloroplast
218NC_008117CATT34107411812 Zygnema circumcarinatum chloroplast
219NC_008155CATT33699371012 Oryza sativa Indica Group chloroplast
220NC_008155CATT313407613408611 Oryza sativa Indica Group chloroplast
221NC_008235CATT312678412679512 Populus alba chloroplast
222NC_008326CATT313091313092412 Liriodendron tulipifera chloroplast
223NC_008335CATT314815811 Platanus occidentalis chloroplast
224NC_008335CATT32841285212 Platanus occidentalis chloroplast
225NC_008336CATT312772312773412 Nandina domestica chloroplast
226NC_008407CATT34407441812 Jasminum nudiflorum chloroplast
227NC_008407CATT313776513777612 Jasminum nudiflorum chloroplast
228NC_008454CATT3265642657512 Pelargonium x hortorum chloroplast
229NC_008454CATT3966259663713 Pelargonium x hortorum chloroplast
230NC_008454CATT314814814815912 Pelargonium x hortorum chloroplast
231NC_008456CATT313124113125212 Drimys granadensis chloroplast
232NC_008535CATT33882389312 Coffea arabica chloroplast
233NC_008591CATT311112111 Agrostis stolonifera chloroplast
234NC_008641CATT3735067351712 Gossypium barbadense chloroplast
235NC_008641CATT313098513099612 Gossypium barbadense chloroplast
236NC_008788CATT313166213167312 Nuphar advena chloroplast
237NC_008796CATT311394911396012 Ranunculus macranthus chloroplast
238NC_008796CATT312814412815411 Ranunculus macranthus chloroplast
239NC_009143CATT312731612732712 Populus trichocarpa chloroplast
240NC_009268CATT3593805939112 Arabis hirsuta chloroplast
241NC_009598CATT3329193293012 Chloranthus spicatus chloroplast
242NC_009598CATT313047013048011 Chloranthus spicatus chloroplast
243NC_009599CATT312989912991012 Buxus microphylla chloroplast
244NC_009600CATT3866838669311 Illicium oligandrum chloroplast
245NC_009600CATT312999013000112 Illicium oligandrum chloroplast
246NC_009601CATT315244415245411 Dioscorea elephantipes chloroplast
247NC_009963CATT3134621347211 Cuscuta exaltata chloroplast
248NC_010093CATT37194720411 Acorus americanus chloroplast
249NC_010358CATT313725613726611 Oenothera argillicola chloroplast
250NC_010359CATT3631096312113 Aneura mirabilis chloroplast
251NC_010359CATT3888498886012 Aneura mirabilis chloroplast
252NC_010360CATT313782113783111 Oenothera glazioviana chloroplast
253NC_010361CATT313730813731811 Oenothera biennis chloroplast
254NC_010362CATT313596813597811 Oenothera parviflora chloroplast
255NC_010433CATT313201713202812 Manihot esculenta chloroplast
256NC_010442CATT34172418312 Trachelium caeruleum chloroplast
257NC_010776CATT313080413081512 Fagopyrum esculentum subsp. ancestrale chloroplast
258NC_011031CATT311437411438512 Oedogonium cardiacum chloroplast
259NC_011032CATT313476813477811 Brachypodium distachyon chloroplast
260NC_011152CATT310712310713412 Picea sitchensis chloroplast
261NC_011154CATT3786217863212 Pinus gerardiana chloroplast
262NC_011155CATT3784247843512 Pinus krempfii chloroplast
263NC_011156CATT3779197793012 Pinus lambertiana chloroplast
264NC_011163CATT312394712395711 Cicer arietinum chloroplast
265NC_011600CATT3486194862911 Vaucheria litorea chloroplast
266NC_011828CATT3812318124212 Trifolium subterraneum chloroplast
267NC_011828CATT3859248593512 Trifolium subterraneum chloroplast
268NC_011828CATT314349414350411 Trifolium subterraneum chloroplast
269NC_011930CATT3261462615712 Keteleeria davidiana chloroplast
270NC_012224CATT3352923530211 Jatropha curcas chloroplast
271NC_012615CATT3170101702112 Megaleranthis saniculifolia chloroplast
272NC_012818CATT3203802039011 Alsophila spinulosa chloroplast
273NC_012927CATT313892713893711 Bambusa oldhamii chloroplast
274NC_012978CATT3297282974013 Parachlorella kessleri chloroplast
275NC_013086CATT3133041331411 Selaginella moellendorffii plastid
276NC_013088CATT3561545616512 Dendrocalamus latiflorus chloroplast
277NC_013088CATT313898813899811 Dendrocalamus latiflorus chloroplast
278NC_013823CATT316109516110511 Typha latifolia chloroplast
279NC_013991CATT3148381484912 Phoenix dactylifera chloroplast
280NC_013991CATT3325063251712 Phoenix dactylifera chloroplast
281NC_013991CATT315796815797811 Phoenix dactylifera chloroplast
282NC_014056CATT311728111729212 Oncidium Gower Ramsey chloroplast
283NC_014056CATT314590214591211 Oncidium Gower Ramsey chloroplast
284NC_014057CATT3927889279912 Pisum sativum chloroplast
285NC_014062CATT313798813799811 Anomochloa marantoidea chloroplast
286NC_014063CATT310981210982312 Lathyrus sativus chloroplast
287NC_014063CATT311966911967911 Lathyrus sativus chloroplast
288NC_013707CATT34127413812 Olea europaea chloroplast
289NC_013707CATT312735512736612 Olea europaea chloroplast