ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Imperfect CAG Repeats

S.NoSequence IDMotifIterationsStartEndTract LengthSequence Name
1NC_013086CAG713383613385621 Selaginella moellendorffii plastid
2NC_013086CAG611731511733218 Selaginella moellendorffii plastid
3NC_015084CAG5594675948115Coccomyxa sp. C-169 plastid
4NC_015359CAG5292982931215Chlorella variabilis plastid
5NC_015830CAG568469815Bambusa emeiensis chloroplast
6NC_016733CAG5197781979215Pedinomonas minor chloroplast
7NC_016753CAG51285129915Colocasia esculenta chloroplast
8NC_020365CAG572674015Calamus caryotoides plastid
9NC_021101CAG51030104415Francoa sonchifolia plastid
10NC_001603CAG5801728018615 Euglena gracilis chloroplast
11NC_006290CAG51078109215 Panax ginseng chloroplast
12NC_007957CAG51005101915 Vitis vinifera chloroplast
13NC_008101CAG516140516141915 Scenedesmus obliquus chloroplast
14NC_012099CAG5325163253015 Pyramimonas parkeae chloroplast
15NC_012927CAG568469815 Bambusa oldhamii chloroplast
16NC_013088CAG570772115 Dendrocalamus latiflorus chloroplast
17NC_011087CAG417196117197212Paulinella chromatophora chromatophore
18NC_011087CAG417613817614912Paulinella chromatophora chromatophore
19NC_011087CAG429140529141511Paulinella chromatophora chromatophore
20NC_011087CAG461970461971613Paulinella chromatophora chromatophore
21NC_011087CAG464687064688112Paulinella chromatophora chromatophore
22NC_011087CAG470748170749212Paulinella chromatophora chromatophore
23NC_011087CAG480608380609412Paulinella chromatophora chromatophore
24NC_011087CAG494173294174413Paulinella chromatophora chromatophore
25NC_014267CAG4882958830612Kryptoperidinium foliaceum chloroplast
26NC_014340CAG46823683412Chromera velia strain CCMP2878 chloroplast
27NC_014345CAG44336434712Alveolata sp. CCMP3155 chloroplast
28NC_014346CAG435628235629312Floydiella terrestris chloroplast
29NC_014348CAG4136781368912Pteridium aquilinum subsp. aquilinum chloroplast
30NC_014570CAG41132114312Eucalyptus grandis chloroplast
31NC_014676CAG41144115512Theobroma cacao chloroplast
32NC_014697CAG493894912Prunus persica chloroplast
33NC_014807CAG41071108212Corynocarpus laevigata chloroplast
34NC_014808CAG48796880712Thalassiosira oceanica CCMP1005 chloroplast
35NC_014808CAG4663546636512Thalassiosira oceanica CCMP1005 chloroplast
36NC_015113CAG485186212Anthriscus cerefolium chloroplast
37NC_015139CAG492293312Brassica rapa subsp. pekinensis chloroplast
38NC_015206CAG4997100812Fragaria vesca subsp. vesca chloroplast
39NC_015308CAG41384139512Hevea brasiliensis chloroplast
40NC_015403CAG411062111063212Fistulifera sp. JPCC DA0580 chloroplast
41NC_015605CAG498199212Nelumbo lutea chloroplast
42NC_015605CAG4303053031612Nelumbo lutea chloroplast
43NC_015608CAG41136114712Olea woodiana subsp. woodiana chloroplast
44NC_015610CAG498699712Nelumbo nucifera chloroplast
45NC_015610CAG4304573046812Nelumbo nucifera chloroplast
46NC_015645CAG414581414582512Schizomeris leibleinii chloroplast
47NC_015645CAG416916816917811Schizomeris leibleinii chloroplast
48NC_015803CAG468069112Indocalamus longiauritus plastid
49NC_015817CAG468069112Phyllostachys edulis chloroplast
50NC_015820CAG469270312Acidosasa purpurea chloroplast
51NC_015826CAG468069112Phyllostachys nigra var. henonis chloroplast
52NC_015831CAG468069112Ferrocalamus rimosivaginus plastid
53NC_015891CAG41308131912Spirodela polyrhiza chloroplast
54NC_015892CAG41088109912Magnolia kwangsiensis chloroplast
55NC_015892CAG4293232933412Magnolia kwangsiensis chloroplast
56NC_015894CAG491192212Wolffiella lingulata chloroplast
57NC_015899CAG497398412Wolffia australiana chloroplast
58NC_015983CAG487188212Cucumis melo subsp. melo chloroplast
59NC_015990CAG468169212Panicum virgatum chloroplast
60NC_015996CAG493995012Pyrus pyrifolia chloroplast
61NC_016063CAG4780367804712Cephalotaxus wilsoniana chloroplast DNA
62NC_016065CAG4476274763812Taiwania cryptomerioides chloroplast DNA
63NC_016068CAG4289562896712Nicotiana undulata chloroplast
64NC_016430CAG41072108312Eleutherococcus senticosus chloroplast
65NC_016677CAG467568612Leersia tisserantii plastid
66NC_016699CAG468069112Phyllostachys propinqua chloroplast
67NC_016718CAG467568612Rhynchoryza subulata plastid
68NC_016733CAG4717157172612Pedinomonas minor chloroplast
69NC_016733CAG4720457205612Pedinomonas minor chloroplast
70NC_016734CAG495496512Brassica napus chloroplast
71NC_016736CAG41234124512Ricinus communis chloroplast
72NC_016921CAG498899912Pentactina rupicola chloroplast
73NC_016927CAG467568612Oryza meridionalis chloroplast
74NC_016986CAG493894912Ginkgo biloba chloroplast
75NC_017006CAG4187691878012Mankyua chejuensis chloroplast
76NC_017006CAG4317243173512Mankyua chejuensis chloroplast
77NC_017602CAG471772812Elaeis guineensis chloroplast
78NC_017835CAG467568612Oryza rufipogon chloroplast
79NC_017928CAG4282802829112Plasmodium falciparum HB3 apicoplast
80NC_018117CAG4287882879912Datura stramonium chloroplast
81NC_018357CAG41064107512Magnolia denudata chloroplast
82NC_018357CAG4293962940712Magnolia denudata chloroplast
83NC_018541CAG493794812Elodea canadensis chloroplast
84NC_018552CAG4289202893112Capsicum annuum chloroplast
85NC_018766CAG496397412Fragaria vesca subsp. bracteata chloroplast
86NC_018767CAG496397412Fragaria mandshurica plastid
87NC_019601CAG4997100812Fragaria chiloensis chloroplast
88NC_019602CAG4997100812Fragaria virginiana chloroplast
89NC_019616CAG417581317582412Vaccinium macrocarpon plastid
90NC_019628CAG4182331824412Pellia endiviifolia chloroplast
91NC_019648CAG468169212Festuca altissima plastid
92NC_019649CAG468069112Festuca ovina plastid
93NC_019650CAG468069112Festuca pratensis plastid
94NC_019651CAG468069112Lolium multiflorum plastid
95NC_020019CAG41053106412Camellia sinensis chloroplast
96NC_020019CAG4292092922012Camellia sinensis chloroplast
97NC_020316CAG41069108012Magnolia officinalis chloroplast
98NC_020316CAG4294722948312Magnolia officinalis chloroplast
99NC_020317CAG41070108112Magnolia officinalis subsp. biloba voucher SC001 chloroplast
100NC_020317CAG4294912950212Magnolia officinalis subsp. biloba voucher SC001 chloroplast
101NC_020318CAG41076108712Magnolia grandiflora voucher NJ016 chloroplast
102NC_020318CAG4294082941912Magnolia grandiflora voucher NJ016 chloroplast
103NC_020321CAG41192120312Taxus mairei voucher NN014 chloroplast
104NC_020341CAG468069112Arundinaria gigantea chloroplast
105NC_020362CAG483184212Heliconia collinsiana plastid
106NC_020363CAG479981012Zingiber spectabile plastid
107NC_020364CAG476677712Pseudophoenix vinifera plastid
108NC_020795CAG4686686867912Chondrus crispus plastid complete genome
109NC_021110CAG4774737748412Cephalotaxus oliveri chloroplast
110NC_021121CAG41104111512Ardisia polysticta chloroplast
111NC_021121CAG4285692858012Ardisia polysticta chloroplast
112NC_021189CAG414672414673512Pyropia haitanensis voucher PH-38 chloroplast
113NC_021189CAG416511216512312Pyropia haitanensis voucher PH-38 chloroplast
114NC_021372CAG469070112Pharus latifolius chloroplast
115NC_021423CAG4281982820912Catharanthus roseus cultivar Pacifica Punch Halo chloroplast
116NC_021425CAG41124113512Tetracentron sinense chloroplast
117NC_021426CAG41114112512Trochodendron aralioides chloroplast
118NC_021426CAG4299382994912Trochodendron aralioides chloroplast
119NC_021437CAG410702610703712Cunninghamia lanceolata chloroplast
120NC_021441CAG4476364764712Taiwania flousiana chloroplast
121NC_021455CAG41020103112Prinsepia utilis plastid
122NC_021760CAG467568612Triticum monococcum chloroplast
123NC_021761CAG466867912Secale cereale chloroplast
124NC_021762CAG467568612Triticum urartu chloroplast
125NC_021936CAG498199212Najas flexilis chloroplast
126NC_022099CAG4763807639112Medicago truncatula cultivar Jemalong 2HA plastid
127NC_022100CAG4761867619712Medicago truncatula cultivar Borung plastid
128NC_022133CAG468469512Aegilops tauschii chloroplast
129NC_022135CAG468469512Aegilops speltoides isolate SPE0661 chloroplast
130NC_000925CAG414411714412812 Porphyra purpurea chloroplast
131NC_000927CAG4797927980211 Nephroselmis olivacea chloroplast
132NC_001319CAG4988469885611 Marchantia polymorpha chloroplast
133NC_001320CAG467568612 Oryza sativa Japonica Group plastid
134NC_001666CAG468269312 Zea mays chloroplast
135NC_001675CAG4477824779312 Cyanophora paradoxa cyanelle
136NC_001713CAG4872258723612 Odontella sinensis chloroplast
137NC_001865CAG4332333324412 Chlorella vulgaris chloroplast
138NC_001865CAG413645913646911 Chlorella vulgaris chloroplast
139NC_001879CAG4289412895212 Nicotiana tabacum plastid
140NC_002693CAG495896912 Oenothera elata subsp. hookeri plastid plastome I
141NC_003119CAG4763807639112 Medicago truncatula chloroplast
142NC_003386CAG4189751898612 Psilotum nudum chloroplast
143NC_003386CAG413316313317412 Psilotum nudum chloroplast
144NC_004677CAG4133121332312 Pinus koraiensis chloroplast
145NC_005086CAG41031104212 Amborella trichopoda chloroplast
146NC_005087CAG4538125382312 Physcomitrella patens subsp. patens chloroplast
147NC_005878CAG4623106232112 Saccharum hybrid cultivar SP-80-3280 chloroplast
148NC_005973CAG467568612 Oryza nivara chloroplast
149NC_006050CAG41115112612 Nymphaea alba chloroplast
150NC_006084CAG468469512 Saccharum hybrid cultivar NCo 310 chloroplast
151NC_006861CAG4670386704912 Huperzia lucidula chloroplast
152NC_007407CAG41057106812 Acorus calamus plastid
153NC_007500CAG4289392895012 Nicotiana sylvestris chloroplast
154NC_007578CAG4123971240711 Lactuca sativa chloroplast
155NC_007602CAG4288722888312 Nicotiana tomentosiformis chloroplast
156NC_007898CAG4285592857012 Solanum lycopersicum chloroplast
157NC_007932CAG412361412362411 Porphyra yezoensis chloroplast
158NC_007932CAG414489714490812 Porphyra yezoensis chloroplast
159NC_007943CAG4285822859312 Solanum bulbocastanum chloroplast
160NC_008096CAG4286922870312 Solanum tuberosum chloroplast
161NC_008097CAG410257610258712 Chara vulgaris chloroplast
162NC_008101CAG4674206743112 Scenedesmus obliquus chloroplast
163NC_008115CAG41182119312 Eucalyptus globulus subsp. globulus chloroplast
164NC_008116CAG412205912207012 Staurastrum punctulatum chloroplast
165NC_008155CAG467568612 Oryza sativa Indica Group chloroplast
166NC_008289CAG4637412 Ostreococcus tauri chloroplast
167NC_008325CAG485686712 Daucus carota chloroplast
168NC_008326CAG41106111712 Liriodendron tulipifera chloroplast
169NC_008335CAG41205121612 Platanus occidentalis chloroplast
170NC_008335CAG4302323024312 Platanus occidentalis chloroplast
171NC_008359CAG492693712 Morus indica chloroplast
172NC_008372CAG420014320015412 Stigeoclonium helveticum chloroplast
173NC_008408CAG42902291312 Bigelowiella natans plastid
174NC_008456CAG470371412 Drimys granadensis chloroplast
175NC_008457CAG488789812 Piper cenocladum chloroplast
176NC_008588CAG4508865089712 Phaeodactylum tricornutum chloroplast
177NC_008589CAG49863987412 Thalassiosira pseudonana chloroplast
178NC_008590CAG41212122312 Hordeum vulgare subsp. vulgare chloroplast
179NC_008591CAG41213122412 Agrostis stolonifera chloroplast
180NC_008602CAG41206121712 Sorghum bicolor chloroplast
181NC_008788CAG477478512 Nuphar advena chloroplast
182NC_009266CAG496497512 Aethionema grandiflorum chloroplast
183NC_009268CAG41103111412 Arabis hirsuta chloroplast
184NC_009269CAG496297312 Barbarea verna chloroplast
185NC_009272CAG41042105312 Draba nemorosa chloroplast
186NC_009273CAG486587612 Lepidium virginicum chloroplast
187NC_009274CAG495696712 Lobularia maritima chloroplast
188NC_009275CAG496998012 Nasturtium officinale chloroplast
189NC_009573CAG4158671587812 Rhodomonas salina chloroplast
190NC_009598CAG479981012 Chloranthus spicatus chloroplast
191NC_009598CAG4287602877112 Chloranthus spicatus chloroplast
192NC_009599CAG490992012 Buxus microphylla chloroplast
193NC_009600CAG41525153612 Illicium oligandrum chloroplast
194NC_009601CAG467668712 Dioscorea elephantipes chloroplast
195NC_009618CAG459460512 Cycas taitungensis chloroplast
196NC_009950CAG468069112 Lolium perenne chloroplast
197NC_010093CAG472974012 Acorus americanus chloroplast
198NC_010109CAG41149116012 Lemna minor chloroplast
199NC_010358CAG494795812 Oenothera argillicola chloroplast
200NC_010360CAG495896912 Oenothera glazioviana chloroplast
201NC_010361CAG495896912 Oenothera biennis chloroplast
202NC_010362CAG495896912 Oenothera parviflora chloroplast
203NC_010433CAG41055106612 Manihot esculenta chloroplast
204NC_010548CAG4894418945111 Cryptomeria japonica chloroplast
205NC_010772CAG4653926540312 Heterosigma akashiwo chloroplast
206NC_010776CAG41030104112 Fagopyrum esculentum subsp. ancestrale chloroplast
207NC_011031CAG4456824569312 Oedogonium cardiacum chloroplast
208NC_011154CAG4133671337812 Pinus gerardiana chloroplast
209NC_011155CAG4133971340812 Pinus krempfii chloroplast
210NC_011156CAG4134001341112 Pinus lambertiana chloroplast
211NC_011158CAG4131551316612 Pinus monophylla chloroplast
212NC_011159CAG4131021311312 Pinus nelsonii chloroplast
213NC_011163CAG41013102412 Cicer arietinum chloroplast
214NC_011713CAG468269312 Festuca arundinacea chloroplast
215NC_011828CAG4292552926612 Trifolium subterraneum chloroplast
216NC_012052CAG4537985380912 Syntrichia ruralis chloroplast
217NC_012097CAG4187661877611 Pycnococcus provasolii chloroplast
218NC_012224CAG41092110312 Jatropha curcas chloroplast
219NC_012818CAG4134561346712 Alsophila spinulosa chloroplast
220NC_012903CAG4382033821412 Aureoumbra lagunensis chloroplast
221NC_013273CAG468269312 Coix lacryma-jobi chloroplast
222NC_013991CAG474175212 Phoenix dactylifera chloroplast
223NC_014062CAG469270312 Anomochloa marantoidea chloroplast
224NC_014062CAG410726310727311 Anomochloa marantoidea chloroplast
225NC_014062CAG411146811147912 Anomochloa marantoidea chloroplast