ChloroMitoSSRDB 2.0 - Database of Microsatellites from Chloroplast & Mitochondrial Genomes

Mitochondria Motifs - Perfect AGAA Repeats

S.No	Sequence ID	Motif	Iterations	Start	End	Tract Length	Sequence Name
1	NC_014050	AGAA	5	55027	55046	20	Cucurbita pepo mitochondrion
2	NC_014050	AGAA	4	148384	148399	16	Cucurbita pepo mitochondrion
3	NC_014050	AGAA	4	476353	476368	16	Cucurbita pepo mitochondrion
4	NC_014050	AGAA	4	492633	492648	16	Cucurbita pepo mitochondrion
5	NC_014050	AGAA	4	525846	525861	16	Cucurbita pepo mitochondrion
6	NC_014050	AGAA	4	744422	744437	16	Cucurbita pepo mitochondrion
7	NC_014772	AGAA	4	14585	14600	16	Gracilariopsis andersonii mitochondrion
8	NC_016005	AGAA	4	774193	774208	16	Cucumis sativus mitochondrion chromosome 1
9	NC_016316	AGAA	4	23960	23975	16	Silene conica mitochondrion chromosome 89
10	NC_020004	AGAA	4	8124	8139	16	Biston panterinaria mitochondrion
11	NC_001284	AGAA	3	113692	113703	12	Arabidopsis thaliana mitochondrion
12	NC_001284	AGAA	3	119582	119593	12	Arabidopsis thaliana mitochondrion
13	NC_001284	AGAA	3	219427	219438	12	Arabidopsis thaliana mitochondrion
14	NC_002511	AGAA	3	101647	101658	12	Beta vulgaris subsp. vulgaris mitochondrion
15	NC_002511	AGAA	3	320194	320205	12	Beta vulgaris subsp. vulgaris mitochondrion
16	NC_002511	AGAA	3	328058	328069	12	Beta vulgaris subsp. vulgaris mitochondrion
17	NC_007579	AGAA	3	380874	380885	12	Triticum aestivum mitochondrion
18	NC_007886	AGAA	3	228653	228664	12	Oryza sativa Indica Group mitochondrion
19	NC_007982	AGAA	3	374462	374473	12	Zea mays subsp. mays mitochondrion
20	NC_007982	AGAA	3	520488	520499	12	Zea mays subsp. mays mitochondrion
21	NC_008240	AGAA	3	4623	4634	12	Mesostigma viride mitochondrion
22	NC_008331	AGAA	3	369429	369440	12	Zea perennis mitochondrion
23	NC_008332	AGAA	3	355526	355537	12	Zea mays subsp. parviglumis mitochondrion
24	NC_008332	AGAA	3	397596	397607	12	Zea mays subsp. parviglumis mitochondrion
25	NC_008333	AGAA	3	13896	13907	12	Zea luxurians mitochondrion
26	NC_008333	AGAA	3	397796	397807	12	Zea luxurians mitochondrion
27	NC_008362	AGAA	3	42947	42958	12	Tripsacum dactyloides mitochondrion
28	NC_011033	AGAA	3	227702	227713	12	Oryza sativa Japonica Group mitochondrion
29	NC_012116	AGAA	3	60694	60705	12	Carica papaya mitochondrion
30	NC_012116	AGAA	3	102894	102905	12	Carica papaya mitochondrion
31	NC_012116	AGAA	3	326664	326675	12	Carica papaya mitochondrion
32	NC_012119	AGAA	3	110794	110805	12	Vitis vinifera mitochondrion
33	NC_012119	AGAA	3	140255	140266	12	Vitis vinifera mitochondrion
34	NC_012119	AGAA	3	247743	247754	12	Vitis vinifera mitochondrion
35	NC_012119	AGAA	3	694210	694221	12	Vitis vinifera mitochondrion
36	NC_013145	AGAA	3	3336	3347	12	Brettanomyces custersianus mitochondrion
37	NC_013145	AGAA	3	17469	17480	12	Brettanomyces custersianus mitochondrion
38	NC_013765	AGAA	3	193523	193534	12	Phaeoceros laevis mitochondrion
39	NC_013816	AGAA	3	76541	76552	12	Oryza rufipogon mitochondrion
40	NC_014043	AGAA	3	282297	282308	12	Citrullus lanatus mitochondrion
41	NC_014050	AGAA	3	10566	10577	12	Cucurbita pepo mitochondrion
42	NC_014050	AGAA	3	72054	72065	12	Cucurbita pepo mitochondrion
43	NC_014050	AGAA	3	163047	163058	12	Cucurbita pepo mitochondrion
44	NC_014050	AGAA	3	267563	267574	12	Cucurbita pepo mitochondrion
45	NC_014050	AGAA	3	293567	293578	12	Cucurbita pepo mitochondrion
46	NC_014050	AGAA	3	389139	389150	12	Cucurbita pepo mitochondrion
47	NC_014050	AGAA	3	464119	464130	12	Cucurbita pepo mitochondrion
48	NC_014050	AGAA	3	561221	561232	12	Cucurbita pepo mitochondrion
49	NC_014050	AGAA	3	642524	642535	12	Cucurbita pepo mitochondrion
50	NC_014050	AGAA	3	761514	761525	12	Cucurbita pepo mitochondrion
51	NC_014050	AGAA	3	781549	781560	12	Cucurbita pepo mitochondrion
52	NC_014050	AGAA	3	805540	805551	12	Cucurbita pepo mitochondrion
53	NC_014050	AGAA	3	864649	864660	12	Cucurbita pepo mitochondrion
54	NC_014050	AGAA	3	965456	965467	12	Cucurbita pepo mitochondrion
55	NC_015099	AGAA	3	236067	236078	12	Beta vulgaris subsp. maritima mitochondrion
56	NC_015099	AGAA	3	243931	243942	12	Beta vulgaris subsp. maritima mitochondrion
57	NC_015141	AGAA	3	235467	235478	12	Ricinus communis mitochondrion
58	NC_015141	AGAA	3	338328	338339	12	Ricinus communis mitochondrion
59	NC_015400	AGAA	3	23468	23479	12	Moniliophthora roreri mitochondrion
60	NC_015527	AGAA	3	11797	11808	12	Rasbora daniconius mitochondrion
61	NC_015535	AGAA	3	11799	11810	12	Trigonostigma espei mitochondrion
62	NC_015994	AGAA	3	235984	235995	12	Beta macrocarpa mitochondrion
63	NC_015994	AGAA	3	243848	243859	12	Beta macrocarpa mitochondrion
64	NC_016005	AGAA	3	125799	125810	12	Cucumis sativus mitochondrion chromosome 1
65	NC_016005	AGAA	3	175218	175229	12	Cucumis sativus mitochondrion chromosome 1
66	NC_016005	AGAA	3	259053	259064	12	Cucumis sativus mitochondrion chromosome 1
67	NC_016005	AGAA	3	308501	308512	12	Cucumis sativus mitochondrion chromosome 1
68	NC_016005	AGAA	3	392556	392567	12	Cucumis sativus mitochondrion chromosome 1
69	NC_016005	AGAA	3	452924	452935	12	Cucumis sativus mitochondrion chromosome 1
70	NC_016005	AGAA	3	633323	633334	12	Cucumis sativus mitochondrion chromosome 1
71	NC_016005	AGAA	3	889849	889860	12	Cucumis sativus mitochondrion chromosome 1
72	NC_016005	AGAA	3	890339	890350	12	Cucumis sativus mitochondrion chromosome 1
73	NC_016005	AGAA	3	926173	926184	12	Cucumis sativus mitochondrion chromosome 1
74	NC_016005	AGAA	3	1042972	1042983	12	Cucumis sativus mitochondrion chromosome 1
75	NC_016005	AGAA	3	1311387	1311398	12	Cucumis sativus mitochondrion chromosome 1
76	NC_016006	AGAA	3	33993	34004	12	Cucumis sativus mitochondrion chromosome 3
77	NC_016056	AGAA	3	6959	6970	12	Bactrocera cucurbitae mitochondrion
78	NC_016177	AGAA	3	12886	12897	12	Silene conica mitochondrion chromosome 87
79	NC_016177	AGAA	3	28248	28259	12	Silene conica mitochondrion chromosome 87
80	NC_016206	AGAA	3	28548	28559	12	Silene conica mitochondrion chromosome 93
81	NC_016207	AGAA	3	1866	1877	12	Silene conica mitochondrion chromosome 110
82	NC_016212	AGAA	3	146223	146234	12	Silene conica mitochondrion chromosome 5
83	NC_016217	AGAA	3	53620	53631	12	Silene conica mitochondrion chromosome 106
84	NC_016221	AGAA	3	80026	80037	12	Silene conica mitochondrion chromosome 3
85	NC_016225	AGAA	3	17033	17044	12	Silene conica mitochondrion chromosome 23
86	NC_016225	AGAA	3	30293	30304	12	Silene conica mitochondrion chromosome 23
87	NC_016226	AGAA	3	91080	91091	12	Silene conica mitochondrion chromosome 12
88	NC_016226	AGAA	3	104340	104351	12	Silene conica mitochondrion chromosome 12
89	NC_016227	AGAA	3	60517	60528	12	Silene conica mitochondrion chromosome 11
90	NC_016227	AGAA	3	73777	73788	12	Silene conica mitochondrion chromosome 11
91	NC_016227	AGAA	3	121322	121333	12	Silene conica mitochondrion chromosome 11
92	NC_016228	AGAA	3	93129	93140	12	Silene conica mitochondrion chromosome 14
93	NC_016228	AGAA	3	103843	103854	12	Silene conica mitochondrion chromosome 14
94	NC_016230	AGAA	3	131015	131026	12	Silene conica mitochondrion chromosome 2
95	NC_016231	AGAA	3	27725	27736	12	Silene conica mitochondrion chromosome 16
96	NC_016233	AGAA	3	38381	38392	12	Silene conica mitochondrion chromosome 18
97	NC_016234	AGAA	3	20784	20795	12	Silene conica mitochondrion chromosome 20
98	NC_016235	AGAA	3	74557	74568	12	Silene conica mitochondrion chromosome 7
99	NC_016243	AGAA	3	1115	1126	12	Silene conica mitochondrion chromosome 36
100	NC_016244	AGAA	3	87186	87197	12	Silene conica mitochondrion chromosome 39
101	NC_016245	AGAA	3	37907	37918	12	Silene conica mitochondrion chromosome 48
102	NC_016249	AGAA	3	90973	90984	12	Silene conica mitochondrion chromosome 1
103	NC_016249	AGAA	3	113646	113657	12	Silene conica mitochondrion chromosome 1
104	NC_016251	AGAA	3	17097	17108	12	Silene conica mitochondrion chromosome 22
105	NC_016253	AGAA	3	42260	42271	12	Silene conica mitochondrion chromosome 50
106	NC_016253	AGAA	3	90280	90291	12	Silene conica mitochondrion chromosome 50
107	NC_016256	AGAA	3	53065	53076	12	Silene conica mitochondrion chromosome 67
108	NC_016257	AGAA	3	83139	83150	12	Silene conica mitochondrion chromosome 54
109	NC_016261	AGAA	3	4754	4765	12	Silene conica mitochondrion chromosome 41
110	NC_016266	AGAA	3	3171	3182	12	Silene conica mitochondrion chromosome 80
111	NC_016269	AGAA	3	43714	43725	12	Silene conica mitochondrion chromosome 86
112	NC_016282	AGAA	3	31304	31315	12	Silene conica mitochondrion chromosome 88
113	NC_016282	AGAA	3	39337	39348	12	Silene conica mitochondrion chromosome 88
114	NC_016284	AGAA	3	18825	18836	12	Silene conica mitochondrion chromosome 65
115	NC_016286	AGAA	3	3859	3870	12	Silene conica mitochondrion chromosome 103
116	NC_016287	AGAA	3	27915	27926	12	Silene conica mitochondrion chromosome 69
117	NC_016287	AGAA	3	39351	39362	12	Silene conica mitochondrion chromosome 69
118	NC_016288	AGAA	3	19094	19105	12	Silene conica mitochondrion chromosome 125
119	NC_016288	AGAA	3	30530	30541	12	Silene conica mitochondrion chromosome 125
120	NC_016291	AGAA	3	49297	49308	12	Silene conica mitochondrion chromosome 71
121	NC_016292	AGAA	3	12297	12308	12	Silene conica mitochondrion chromosome 124
122	NC_016294	AGAA	3	4768	4779	12	Silene conica mitochondrion chromosome 119
123	NC_016295	AGAA	3	36938	36949	12	Silene conica mitochondrion chromosome 113
124	NC_016296	AGAA	3	40168	40179	12	Silene conica mitochondrion chromosome 122
125	NC_016298	AGAA	3	2131	2142	12	Silene conica mitochondrion chromosome 43
126	NC_016300	AGAA	3	54074	54085	12	Silene conica mitochondrion chromosome 62
127	NC_016303	AGAA	3	51479	51490	12	Silene conica mitochondrion chromosome 33
128	NC_016305	AGAA	3	35424	35435	12	Silene conica mitochondrion chromosome 99
129	NC_016308	AGAA	3	42384	42395	12	Silene conica mitochondrion chromosome 17
130	NC_016308	AGAA	3	96204	96215	12	Silene conica mitochondrion chromosome 17
131	NC_016321	AGAA	3	3865	3876	12	Silene conica mitochondrion chromosome 101
132	NC_016324	AGAA	3	15644	15655	12	Silene conica mitochondrion chromosome 118
133	NC_016325	AGAA	3	51089	51100	12	Silene conica mitochondrion chromosome 61
134	NC_016327	AGAA	3	51866	51877	12	Silene conica mitochondrion chromosome 96
135	NC_016328	AGAA	3	5869	5880	12	Silene conica mitochondrion
136	NC_016328	AGAA	3	30663	30674	12	Silene conica mitochondrion
137	NC_016339	AGAA	3	4055	4066	12	Silene conica mitochondrion chromosome 49
138	NC_016341	AGAA	3	60622	60633	12	Silene conica mitochondrion chromosome 46
139	NC_016342	AGAA	3	62919	62930	12	Silene conica mitochondrion chromosome 58
140	NC_016345	AGAA	3	77858	77869	12	Silene noctiflora mitochondrion chromosome 12
141	NC_016348	AGAA	3	69497	69508	12	Silene noctiflora mitochondrion chromosome 3
142	NC_016355	AGAA	3	25681	25692	12	Silene noctiflora mitochondrion chromosome 6
143	NC_016365	AGAA	3	64219	64230	12	Silene noctiflora mitochondrion chromosome 16
144	NC_016365	AGAA	3	114184	114195	12	Silene noctiflora mitochondrion chromosome 16
145	NC_016368	AGAA	3	6042	6053	12	Silene noctiflora mitochondrion chromosome 20
146	NC_016370	AGAA	3	91034	91045	12	Silene noctiflora mitochondrion chromosome 37
147	NC_016380	AGAA	3	24515	24526	12	Silene noctiflora mitochondrion chromosome 58
148	NC_016382	AGAA	3	5001	5012	12	Silene noctiflora mitochondrion chromosome 9
149	NC_016384	AGAA	3	69279	69290	12	Silene noctiflora mitochondrion chromosome 15
150	NC_016388	AGAA	3	60723	60734	12	Silene noctiflora mitochondrion chromosome 51
151	NC_016388	AGAA	3	86162	86173	12	Silene noctiflora mitochondrion chromosome 51
152	NC_016389	AGAA	3	28948	28959	12	Silene noctiflora mitochondrion chromosome 21
153	NC_016391	AGAA	3	60527	60538	12	Silene noctiflora mitochondrion chromosome 27
154	NC_016392	AGAA	3	66995	67006	12	Silene noctiflora mitochondrion chromosome 45
155	NC_016393	AGAA	3	25391	25402	12	Silene noctiflora mitochondrion chromosome 1
156	NC_016394	AGAA	3	25127	25138	12	Silene noctiflora mitochondrion chromosome 59
157	NC_016396	AGAA	3	148078	148089	12	Silene noctiflora mitochondrion chromosome 2
158	NC_016401	AGAA	3	46157	46168	12	Silene noctiflora mitochondrion chromosome 34
159	NC_016406	AGAA	3	58103	58114	12	Silene vulgaris mitochondrion chromosome 1
160	NC_016406	AGAA	3	149436	149447	12	Silene vulgaris mitochondrion chromosome 1
161	NC_016406	AGAA	3	298932	298943	12	Silene vulgaris mitochondrion chromosome 1
162	NC_016742	AGAA	3	300147	300158	12	Millettia pinnata mitochondrion
163	NC_016743	AGAA	3	199673	199684	12	Lotus japonicus mitochondrion
164	NC_016743	AGAA	3	345599	345610	12	Lotus japonicus mitochondrion
165	NC_018352	AGAA	3	6849	6860	12	Necrophila americana mitochondrion
166	NC_018551	AGAA	3	60698	60709	12	Raphanus sativus mitochondrion
167	NC_018551	AGAA	3	95505	95516	12	Raphanus sativus mitochondrion
168	NC_018551	AGAA	3	191458	191469	12	Raphanus sativus mitochondrion
169	NC_018554	AGAA	3	142586	142597	12	Malus x domestica mitochondrion
170	NC_018554	AGAA	3	159971	159982	12	Malus x domestica mitochondrion
171	NC_018822	AGAA	3	1162	1173	12	Protopterus annectens mitochondrion
172	NC_020005	AGAA	3	11787	11798	12	Rasbora steineri mitochondrion
173	NC_020370	AGAA	3	45128	45139	12	Ministeria vibrans mitochondrion
174	NC_021152	AGAA	3	121651	121662	12	Liriodendron tulipifera mitochondrion
175	NC_021152	AGAA	3	148465	148476	12	Liriodendron tulipifera mitochondrion
176	NC_001708	AGAA	3	1160	1171	12	Protopterus dolloi mitochondrion
177	NC_004919	AGAA	3	11616	11627	12	Procavia capensis mitochondrion
178	NC_005840	AGAA	3	13615	13626	12	Siphonodentalium lobatum mitochondrion
179	NC_010301	AGAA	3	11610	11621	12	Dendrohyrax dorsalis mitochondrion
180	NC_011574	AGAA	3	7166	7177	12	Steganacarus magnus mitochondrion

ChloroMitoSSRDB 2.0 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

Mitochondria Motifs - Perfect AGAA Repeats