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ChloroMitoSSRDB 2.00 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Perfect (TTA) Repeats

S.NoSequence IDSSRSSR TypeTract LengthStartEndSequence Name
1NC_022133(TTA)4p3121358713598Aegilops tauschii chloroplast
2NC_022100(TTA)4p3125998059991Medicago truncatula cultivar Borung plastid
3NC_022099(TTA)4p3125996159972Medicago truncatula cultivar Jemalong 2HA plastid
4NC_021455(TTA)4p31283828393Prinsepia utilis plastid
5NC_021455(TTA)4p3128498884999Prinsepia utilis plastid
6NC_021441(TTA)4p3124191841929Taiwania flousiana chloroplast
7NC_021437(TTA)5p3154399944013Cunninghamia lanceolata chloroplast
8NC_021111(TTA)4p3126710867119Cistanche deserticola chloroplast
9NC_021109(TTA)4p312259973259984Pleodorina starrii plastid
10NC_020795(TTA)5p315103635103649Chondrus crispus plastid complete genome
11NC_020607(TTA)4p3126412464135Artemisia frigida chloroplast
12NC_020460(TTA)4p3126496264973Euglena viridis culture-collection ATCC:PRA110 chloroplast
13NC_020438(TTA)18p3545838058433Gonium pectorale chloroplast
14NC_020438(TTA)4p312108751108762Gonium pectorale chloroplast
15NC_020438(TTA)4p312172922172933Gonium pectorale chloroplast
16NC_020367(TTA)4p3121622216233Dasypogon bromeliifolius plastid
17NC_020367(TTA)4p3123370233713Dasypogon bromeliifolius plastid
18NC_020363(TTA)4p312125266125277Zingiber spectabile plastid
19NC_020152(TTA)4p3124099541006Quercus rubra plastid
20NC_019649(TTA)4p3121804618057Festuca ovina plastid
21NC_019616(TTA)4p3126854168552Vaccinium macrocarpon plastid
22NC_018766(TTA)4p3121041110422Fragaria vesca subsp. bracteata chloroplast
23NC_018565(TTA)4p3122884428855Pachycladon enysii chloroplast
24NC_018565(TTA)4p3124975949770Pachycladon enysii chloroplast
25NC_018552(TTA)5p315130985130999Capsicum annuum chloroplast
26NC_018541(TTA)4p3126250962520Elodea canadensis chloroplast
27NC_018523(TTA)4p3123860438615Saccharina japonica chloroplast
28NC_018523(TTA)4p3128150581516Saccharina japonica chloroplast
29NC_018117(TTA)4p3125331453325Datura stramonium chloroplast
30NC_018113(TTA)4p31285408551Gossypium robinsonii chloroplast
31NC_018112(TTA)4p31283828393Gossypium areysianum chloroplast
32NC_018111(TTA)4p31284228433Gossypium capitis-viridis chloroplast
33NC_018110(TTA)4p31283828393Gossypium somalense chloroplast
34NC_018051(TTA)4p3128133281343Vigna unguiculata chloroplast
35NC_017928(TTA)6p3181130411321Plasmodium falciparum HB3 apicoplast
36NC_017928(TTA)5p3151616616180Plasmodium falciparum HB3 apicoplast
37NC_017894(TTA)4p31283858396Gossypium gossypioides chloroplast
38NC_016986(TTA)4p3121589315904Ginkgo biloba chloroplast
39NC_016753(TTA)4p3124927449285Colocasia esculenta chloroplast
40NC_016753(TTA)4p312137172137183Colocasia esculenta chloroplast
41NC_016736(TTA)4p312121860121871Ricinus communis chloroplast
42NC_016732(TTA)5p3156241362427Dunaliella salina chloroplast
43NC_016732(TTA)4p312230211230222Dunaliella salina chloroplast
44NC_016731(TTA)4p31228292840Synedra acus chloroplast
45NC_016731(TTA)4p3121379113802Synedra acus chloroplast
46NC_016729(TTA)4p3123871038721Silene conica chloroplast
47NC_016729(TTA)4p312100921100932Silene conica chloroplast
48NC_016728(TTA)5p3155608256096Silene noctiflora chloroplast
49NC_016712(TTA)4p31284108421Gossypium arboreum chloroplast
50NC_016711(TTA)4p31284158426Gossypium mustelinum chloroplast
51NC_016708(TTA)4p3128042180432Millettia pinnata chloroplast
52NC_016692(TTA)4p31284098420Gossypium herbaceum subsp. africanum chloroplast
53NC_016690(TTA)4p31284228433Gossypium tomentosum chloroplast
54NC_016670(TTA)4p31284258436Gossypium darwinii chloroplast
55NC_016668(TTA)4p31283668377Gossypium raimondii chloroplast
56NC_016471(TTA)4p3122985029861Neottia nidus-avis plastid
57NC_016433(TTA)4p3122301823029Sesamum indicum chloroplast
58NC_016068(TTA)4p3125318953200Nicotiana undulata chloroplast
59NC_016065(TTA)4p3124191241923Taiwania cryptomerioides chloroplast DNA
60NC_016064(TTA)4p3127253072541Pseudotsuga sinensis var. wilsoniana chloroplast
61NC_015983(TTA)4p3123024330254Cucumis melo subsp. melo chloroplast
62NC_015891(TTA)5p3153005830072Spirodela polyrhiza chloroplast
63NC_015891(TTA)4p3123342133432Spirodela polyrhiza chloroplast
64NC_015891(TTA)4p3127804178052Spirodela polyrhiza chloroplast
65NC_015645(TTA)4p312102896102907Schizomeris leibleinii chloroplast
66NC_015645(TTA)4p312148508148519Schizomeris leibleinii chloroplast
67NC_015610(TTA)5p3151785717871Nelumbo nucifera chloroplast
68NC_015610(TTA)4p3123473634747Nelumbo nucifera chloroplast
69NC_015605(TTA)5p3151768917703Nelumbo lutea chloroplast
70NC_015543(TTA)4p31218951906Jacobaea vulgaris chloroplast
71NC_015206(TTA)5p3151044110455Fragaria vesca subsp. vesca chloroplast
72NC_015204(TTA)4p31284228433Gossypium thurberi chloroplast
73NC_015139(TTA)4p3122650426515Brassica rapa subsp. pekinensis chloroplast
74NC_014874(TTA)6p3181614916166Rhizanthella gardneri plastid
75NC_014808(TTA)4p3121985019861Thalassiosira oceanica CCMP1005 chloroplast
76NC_014807(TTA)5p3151621916233Corynocarpus laevigata chloroplast
77NC_014676(TTA)6p3181025310270Theobroma cacao chloroplast
78NC_014675(TTA)4p3127726477275Isoetes flaccida chloroplast
79NC_014570(TTA)4p31293559366Eucalyptus grandis chloroplast
80NC_014267(TTA)4p3121024610257Kryptoperidinium foliaceum chloroplast
81NC_014267(TTA)4p3123087330884Kryptoperidinium foliaceum chloroplast
82NC_013843(TTA)4p3128135681367 Vigna radiata chloroplast
83NC_013843(TTA)4p3128135681367 Vigna radiata chloroplast
84NC_013823(TTA)6p3187659476611 Typha latifolia chloroplast
85NC_013498(TTA)4p3121946319474 Ectocarpus siliculosus chloroplast
86NC_013273(TTA)5p31558285842 Coix lacryma-jobi chloroplast
87NC_012903(TTA)4p3121428414295 Aureoumbra lagunensis chloroplast
88NC_012052(TTA)5p315112600112614 Syntrichia ruralis chloroplast
89NC_012052(TTA)5p3154982949843 Syntrichia ruralis chloroplast
90NC_012052(TTA)5p3153327833292 Syntrichia ruralis chloroplast
91NC_012052(TTA)4p3123305033061 Syntrichia ruralis chloroplast
92NC_012052(TTA)4p31241964207 Syntrichia ruralis chloroplast
93NC_011954(TTA)5p315104940104954 Ephedra equisetina chloroplast
94NC_011930(TTA)5p3155608656100 Keteleeria davidiana chloroplast
95NC_011031(TTA)5p3151240912423 Oedogonium cardiacum chloroplast
96NC_011031(TTA)4p312159897159908 Oedogonium cardiacum chloroplast
97NC_011031(TTA)4p312140407140418 Oedogonium cardiacum chloroplast
98NC_011031(TTA)4p3124062140632 Oedogonium cardiacum chloroplast
99NC_011031(TTA)4p3123395033961 Oedogonium cardiacum chloroplast
100NC_010772(TTA)5p315107516107530 Heterosigma akashiwo chloroplast
101NC_010772(TTA)4p312123585123596 Heterosigma akashiwo chloroplast
102NC_010654(TTA)7p321100048100068 Welwitschia mirabilis chloroplast
103NC_010548(TTA)5p3154045640470 Cryptomeria japonica chloroplast
104NC_009963(TTA)4p3127857978590 Cuscuta exaltata chloroplast
105NC_009681(TTA)4p3126437864389 Leptosira terrestris chloroplast
106NC_009599(TTA)5p315130124130138 Buxus microphylla chloroplast
107NC_009599(TTA)4p3121328213293 Buxus microphylla chloroplast
108NC_009272(TTA)4p3122608826099 Draba nemorosa chloroplast
109NC_009270(TTA)4p31279697980 Capsella bursa-pastoris chloroplast
110NC_009269(TTA)4p3127123071241 Barbarea verna chloroplast
111NC_009267(TTA)4p3123213832149 Olimarabidopsis pumila chloroplast
112NC_008796(TTA)4p3128209682107 Ranunculus macranthus chloroplast
113NC_008641(TTA)4p31284298440 Gossypium barbadense chloroplast
114NC_008602(TTA)4p3123907639087 Sorghum bicolor chloroplast
115NC_008589(TTA)4p312105692105703 Thalassiosira pseudonana chloroplast
116NC_008588(TTA)4p312736747 Phaeodactylum tricornutum chloroplast
117NC_008372(TTA)4p312200980200991 Stigeoclonium helveticum chloroplast
118NC_008372(TTA)4p3124844948460 Stigeoclonium helveticum chloroplast
119NC_008335(TTA)5p3157304373057 Platanus occidentalis chloroplast
120NC_008325(TTA)4p3126374063751 Daucus carota chloroplast
121NC_008325(TTA)4p3122846228473 Daucus carota chloroplast
122NC_008325(TTA)4p3121221312224 Daucus carota chloroplast
123NC_008325(TTA)4p31253425353 Daucus carota chloroplast
124NC_008235(TTA)4p312118251118262 Populus alba chloroplast
125NC_008117(TTA)5p315116955116969 Zygnema circumcarinatum chloroplast
126NC_008115(TTA)5p31594479461 Eucalyptus globulus subsp. globulus chloroplast
127NC_008114(TTA)4p312189158189169 Pseudendoclonium akinetum chloroplast
128NC_008114(TTA)4p312166339166350 Pseudendoclonium akinetum chloroplast
129NC_008099(TTA)4p312125079125090 Oltmannsiellopsis viridis chloroplast
130NC_008097(TTA)6p3183036030377 Chara vulgaris chloroplast
131NC_008097(TTA)4p312140229140240 Chara vulgaris chloroplast
132NC_008096(TTA)4p3125274752758 Solanum tuberosum chloroplast
133NC_007957(TTA)4p312118848118859 Vitis vinifera chloroplast
134NC_007943(TTA)4p3125283452845 Solanum bulbocastanum chloroplast
135NC_007602(TTA)4p3125371253723 Nicotiana tomentosiformis chloroplast
136NC_007602(TTA)4p3125313853149 Nicotiana tomentosiformis chloroplast
137NC_007500(TTA)4p3125380953820 Nicotiana sylvestris chloroplast
138NC_007500(TTA)4p3125318153192 Nicotiana sylvestris chloroplast
139NC_007144(TTA)4p3124901849029 Cucumis sativus chloroplast
140NC_007144(TTA)4p3123027930290 Cucumis sativus chloroplast
141NC_006137(TTA)4p3121892318934 Gracilaria tenuistipitata var. liui chloroplast
142NC_005353(TTA)4p312198302198313 Chlamydomonas reinhardtii chloroplast
143NC_005353(TTA)15p345158252158296 Chlamydomonas reinhardtii chloroplast
144NC_005087(TTA)4p312105737105748 Physcomitrella patens subsp. patens chloroplast
145NC_005087(TTA)4p3129716397174 Physcomitrella patens subsp. patens chloroplast
146NC_005086(TTA)4p3124848948500 Amborella trichopoda chloroplast
147NC_004993(TTA)4p3126699767008 Calycanthus floridus var. glaucus chloroplast
148NC_004823(TTA)4p3121307513086 Eimeria tenella strain Penn State apicoplast
149NC_004561(TTA)4p3125345253463 Atropa belladonna chloroplast
150NC_004115(TTA)4p3122811828129 Chaetosphaeridium globosum chloroplast
151NC_003119(TTA)4p3125996159972 Medicago truncatula chloroplast
152NC_002202(TTA)4p3127914879159 Spinacia oleracea plastid
153NC_002186(TTA)4p312613624 Mesostigma viride chloroplast
154NC_001879(TTA)4p3125381153822 Nicotiana tabacum plastid
155NC_001879(TTA)4p3125318353194 Nicotiana tabacum plastid
156NC_001865(TTA)5p3155248152495 Chlorella vulgaris chloroplast
157NC_001713(TTA)4p3129031890329 Odontella sinensis chloroplast
158NC_001603(TTA)4p312747758 Euglena gracilis chloroplast
159NC_001568(TTA)4p3121603216043 Epifagus virginiana chloroplast
160NC_001568(TTA)4p31250305041 Epifagus virginiana chloroplast
161NC_001319(TTA)4p3125908259093 Marchantia polymorpha chloroplast
162NC_000932(TTA)4p3122882328834 Arabidopsis thaliana chloroplast
163NC_000925(TTA)5p3154940449418 Porphyra purpurea chloroplast