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ChloroMitoSSRDB 2.00 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

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Chloroplast Motifs - Perfect (AATA) Repeats

S.NoSequence IDSSRSSR TypeTract LengthStartEndSequence Name
1NC_022135(AATA)3p412106456106467Aegilops speltoides isolate SPE0661 chloroplast
2NC_022133(AATA)3p412106924106935Aegilops tauschii chloroplast
3NC_022100(AATA)3p41252345245Medicago truncatula cultivar Borung plastid
4NC_022100(AATA)3p4124195341964Medicago truncatula cultivar Borung plastid
5NC_022099(AATA)3p41252305241Medicago truncatula cultivar Jemalong 2HA plastid
6NC_022099(AATA)3p4124189741908Medicago truncatula cultivar Jemalong 2HA plastid
7NC_021762(AATA)3p412108592108603Triticum urartu chloroplast
8NC_021761(AATA)3p412107652107663Secale cereale chloroplast
9NC_021760(AATA)3p412109213109224Triticum monococcum chloroplast
10NC_021645(AATA)3p4125220152212Glycine cyrtoloba voucher CSIRO:G1267 chloroplast
11NC_021455(AATA)3p412121943121954Prinsepia utilis plastid
12NC_021121(AATA)3p412117842117853Ardisia polysticta chloroplast
13NC_021091(AATA)3p412112376112387Vigna angularis chloroplast DNA
14NC_021091(AATA)3p412122833122844Vigna angularis chloroplast DNA
15NC_021075(AATA)3p41235813592Calliarthron tuberculosum chloroplast
16NC_021075(AATA)3p4123430934320Calliarthron tuberculosum chloroplast
17NC_021075(AATA)3p412167175167186Calliarthron tuberculosum chloroplast
18NC_020795(AATA)3p4121192111932Chondrus crispus plastid complete genome
19NC_020607(AATA)3p4122989429905Artemisia frigida chloroplast
20NC_020607(AATA)3p412113599113610Artemisia frigida chloroplast
21NC_020460(AATA)3p4127315173162Euglena viridis culture-collection ATCC:PRA110 chloroplast
22NC_020431(AATA)3p412113325113336Salvia miltiorrhiza chloroplast
23NC_020367(AATA)3p412118172118183Dasypogon bromeliifolius plastid
24NC_020366(AATA)3p412118733118744Bismarckia nobilis plastid
25NC_020365(AATA)3p412117649117660Calamus caryotoides plastid
26NC_020364(AATA)3p412118069118080Pseudophoenix vinifera plastid
27NC_020363(AATA)3p4121462214633Zingiber spectabile plastid
28NC_020363(AATA)3p412117157117168Zingiber spectabile plastid
29NC_020362(AATA)3p412122335122346Heliconia collinsiana plastid
30NC_020341(AATA)3p4125861458625Arundinaria gigantea chloroplast
31NC_020341(AATA)3p412114945114956Arundinaria gigantea chloroplast
32NC_020320(AATA)3p4122989329904Chrysanthemum indicum voucher HeN001 chloroplast
33NC_020316(AATA)3p41244374448Magnolia officinalis chloroplast
34NC_020146(AATA)3p412106965106976Equisetum hyemale chloroplast
35NC_020098(AATA)3p412116071116082Tectona grandis chloroplast
36NC_020092(AATA)3p4122988429895Chrysanthemum x morifolium chloroplast
37NC_020092(AATA)3p4123506435075Chrysanthemum x morifolium chloroplast
38NC_020019(AATA)3p412118392118403Camellia sinensis chloroplast
39NC_020018(AATA)3p4121488814899Monomorphina aenigmatica strain UTEX1284 chloroplast
40NC_019651(AATA)3p412106664106675Lolium multiflorum plastid
41NC_019650(AATA)3p412106768106779Festuca pratensis plastid
42NC_019649(AATA)3p412104878104889Festuca ovina plastid
43NC_019648(AATA)3p412106719106730Festuca altissima plastid
44NC_019628(AATA)3p4129732997340Pellia endiviifolia chloroplast
45NC_019616(AATA)3p412144707144718Vaccinium macrocarpon plastid
46NC_019602(AATA)3p41264576468Fragaria virginiana chloroplast
47NC_019601(AATA)3p41264576468Fragaria chiloensis chloroplast
48NC_018767(AATA)3p41264406451Fragaria mandshurica plastid
49NC_018766(AATA)3p41264396450Fragaria vesca subsp. bracteata chloroplast
50NC_018541(AATA)3p4123733137342Elodea canadensis chloroplast
51NC_018541(AATA)3p4127686576876Elodea canadensis chloroplast
52NC_018541(AATA)3p412118628118639Elodea canadensis chloroplast
53NC_018051(AATA)3p412111965111976Vigna unguiculata chloroplast
54NC_017928(AATA)3p41247144725Plasmodium falciparum HB3 apicoplast
55NC_017835(AATA)3p4125576455775Oryza rufipogon chloroplast
56NC_017835(AATA)3p412106610106621Oryza rufipogon chloroplast
57NC_017602(AATA)3p412117271117282Elaeis guineensis chloroplast
58NC_016927(AATA)3p4125578255793Oryza meridionalis chloroplast
59NC_016927(AATA)3p412106622106633Oryza meridionalis chloroplast
60NC_016921(AATA)3p412117496117507Pentactina rupicola chloroplast
61NC_016921(AATA)3p412132187132198Pentactina rupicola chloroplast
62NC_016736(AATA)3p4123322133232Ricinus communis chloroplast
63NC_016736(AATA)3p412123397123408Ricinus communis chloroplast
64NC_016732(AATA)3p4125936259373Dunaliella salina chloroplast
65NC_016732(AATA)3p4128235182362Dunaliella salina chloroplast
66NC_016729(AATA)3p4128105681067Silene conica chloroplast
67NC_016718(AATA)3p4125690256913Rhynchoryza subulata plastid
68NC_016718(AATA)3p412108296108307Rhynchoryza subulata plastid
69NC_016708(AATA)3p412114076114087Millettia pinnata chloroplast
70NC_016699(AATA)3p4125863858649Phyllostachys propinqua chloroplast
71NC_016677(AATA)3p412108499108510Leersia tisserantii plastid
72NC_016468(AATA)3p412115446115457Boea hygrometrica chloroplast
73NC_016433(AATA)3p412115818115829Sesamum indicum chloroplast
74NC_015996(AATA)3p412135376135387Pyrus pyrifolia chloroplast
75NC_015990(AATA)3p412109635109646Panicum virgatum chloroplast
76NC_015899(AATA)3p412128937128948Wolffia australiana chloroplast
77NC_015899(AATA)3p412134189134200Wolffia australiana chloroplast
78NC_015894(AATA)3p412129552129563Wolffiella lingulata chloroplast
79NC_015891(AATA)4p4168425484269Spirodela polyrhiza chloroplast
80NC_015891(AATA)3p412128861128872Spirodela polyrhiza chloroplast
81NC_015831(AATA)3p4125837058381Ferrocalamus rimosivaginus plastid
82NC_015831(AATA)3p412115446115457Ferrocalamus rimosivaginus plastid
83NC_015830(AATA)3p412110500110511Bambusa emeiensis chloroplast
84NC_015826(AATA)3p4125860658617Phyllostachys nigra var. henonis chloroplast
85NC_015820(AATA)3p4125868458695Acidosasa purpurea chloroplast
86NC_015820(AATA)3p412115710115721Acidosasa purpurea chloroplast
87NC_015817(AATA)3p4125863358644Phyllostachys edulis chloroplast
88NC_015803(AATA)3p4125869158702Indocalamus longiauritus plastid
89NC_015402(AATA)3p4129582495835Ptilidium pulcherrimum chloroplast
90NC_015308(AATA)3p412121890121901Hevea brasiliensis chloroplast
91NC_015206(AATA)3p41264706481Fragaria vesca subsp. vesca chloroplast
92NC_015206(AATA)3p412131546131557Fragaria vesca subsp. vesca chloroplast
93NC_014874(AATA)4p4161865618671Rhizanthella gardneri plastid
94NC_014874(AATA)3p4124057940590Rhizanthella gardneri plastid
95NC_014808(AATA)3p4122154021551Thalassiosira oceanica CCMP1005 chloroplast
96NC_014807(AATA)3p412117477117488Corynocarpus laevigata chloroplast
97NC_014807(AATA)3p412120763120774Corynocarpus laevigata chloroplast
98NC_014675(AATA)3p4128712687137Isoetes flaccida chloroplast
99NC_014570(AATA)3p412121020121031Eucalyptus grandis chloroplast
100NC_014348(AATA)3p4123508735098Pteridium aquilinum subsp. aquilinum chloroplast
101NC_014063(AATA)3p4129995399964 Lathyrus sativus chloroplast
102NC_014063(AATA)3p4129995399964 Lathyrus sativus chloroplast
103NC_014062(AATA)3p412109326109337 Anomochloa marantoidea chloroplast
104NC_014062(AATA)3p412109326109337 Anomochloa marantoidea chloroplast
105NC_013991(AATA)3p412118423118434 Phoenix dactylifera chloroplast
106NC_013991(AATA)3p412118423118434 Phoenix dactylifera chloroplast
107NC_013843(AATA)3p412111989112000 Vigna radiata chloroplast
108NC_013843(AATA)3p412111989112000 Vigna radiata chloroplast
109NC_013823(AATA)3p412121598121609 Typha latifolia chloroplast
110NC_013823(AATA)3p412121598121609 Typha latifolia chloroplast
111NC_013273(AATA)3p412110735110746 Coix lacryma-jobi chloroplast
112NC_013088(AATA)3p412110439110450 Dendrocalamus latiflorus chloroplast
113NC_012927(AATA)3p412110368110379 Bambusa oldhamii chloroplast
114NC_012568(AATA)3p4121210612117 Micromonas pusilla CCMP1545 chloroplast
115NC_012224(AATA)3p412124806124817 Jatropha curcas chloroplast
116NC_012224(AATA)3p4127539675407 Jatropha curcas chloroplast
117NC_012224(AATA)3p4124109841109 Jatropha curcas chloroplast
118NC_012224(AATA)3p4121002010031 Jatropha curcas chloroplast
119NC_012099(AATA)3p4126442764438 Pyramimonas parkeae chloroplast
120NC_012052(AATA)3p4128471684727 Syntrichia ruralis chloroplast
121NC_012052(AATA)3p4121794217953 Syntrichia ruralis chloroplast
122NC_012052(AATA)3p4121460414615 Syntrichia ruralis chloroplast
123NC_011828(AATA)3p41223332344 Trifolium subterraneum chloroplast
124NC_011713(AATA)3p412107411107422 Festuca arundinacea chloroplast
125NC_011087(AATA)3p412377888377899Paulinella chromatophora chromatophore
126NC_011032(AATA)3p412106516106527 Brachypodium distachyon chloroplast
127NC_011032(AATA)3p4125596455975 Brachypodium distachyon chloroplast
128NC_011031(AATA)3p412136439136450 Oedogonium cardiacum chloroplast
129NC_010776(AATA)3p412121261121272 Fagopyrum esculentum subsp. ancestrale chloroplast
130NC_010776(AATA)3p4127210672117 Fagopyrum esculentum subsp. ancestrale chloroplast
131NC_010772(AATA)3p41236693680 Heterosigma akashiwo chloroplast
132NC_010442(AATA)3p412150263150274 Trachelium caeruleum chloroplast
133NC_010442(AATA)3p4127879178802 Trachelium caeruleum chloroplast
134NC_010433(AATA)3p412122046122057 Manihot esculenta chloroplast
135NC_010323(AATA)3p412144977144988 Carica papaya chloroplast
136NC_010323(AATA)3p4121574715758 Carica papaya chloroplast
137NC_010109(AATA)3p412126713126724 Lemna minor chloroplast
138NC_010093(AATA)3p412115365115376 Acorus americanus chloroplast
139NC_009950(AATA)3p412106742106753 Lolium perenne chloroplast
140NC_009808(AATA)3p4128467384684 Ipomoea purpurea chloroplast
141NC_009808(AATA)3p4126913469145 Ipomoea purpurea chloroplast
142NC_009808(AATA)3p41299559966 Ipomoea purpurea chloroplast
143NC_009766(AATA)3p4124830748318 Cuscuta reflexa chloroplast
144NC_009681(AATA)3p41295419552 Leptosira terrestris chloroplast
145NC_009143(AATA)3p412117369117380 Populus trichocarpa chloroplast
146NC_009143(AATA)3p4125996259973 Populus trichocarpa chloroplast
147NC_008796(AATA)3p4125977159782 Ranunculus macranthus chloroplast
148NC_008788(AATA)3p4127526175272 Nuphar advena chloroplast
149NC_008602(AATA)3p412111200111211 Sorghum bicolor chloroplast
150NC_008591(AATA)3p412108268108279 Agrostis stolonifera chloroplast
151NC_008590(AATA)3p412108235108246 Hordeum vulgare subsp. vulgare chloroplast
152NC_008372(AATA)4p416208683208698 Stigeoclonium helveticum chloroplast
153NC_008336(AATA)3p4124324343254 Nandina domestica chloroplast
154NC_008335(AATA)3p4121005710068 Platanus occidentalis chloroplast
155NC_008235(AATA)3p412116886116897 Populus alba chloroplast
156NC_008235(AATA)3p4125957059581 Populus alba chloroplast
157NC_008155(AATA)3p412106565106576 Oryza sativa Indica Group chloroplast
158NC_008155(AATA)3p4125572655737 Oryza sativa Indica Group chloroplast
159NC_008117(AATA)3p4128583385844 Zygnema circumcarinatum chloroplast
160NC_008115(AATA)3p412121186121197 Eucalyptus globulus subsp. globulus chloroplast
161NC_008100(AATA)3p4122788827899 Helicosporidium sp. ex Simulium jonesii plastid
162NC_008099(AATA)3p412119559119570 Oltmannsiellopsis viridis chloroplast
163NC_008097(AATA)4p416103859103874 Chara vulgaris chloroplast
164NC_008097(AATA)3p4128502985040 Chara vulgaris chloroplast
165NC_008097(AATA)3p4122983829849 Chara vulgaris chloroplast
166NC_007957(AATA)3p412145866145877 Vitis vinifera chloroplast
167NC_007499(AATA)3p4126183661847 Phalaenopsis aphrodite subsp. formosana chloroplast
168NC_007407(AATA)3p412115694115705 Acorus calamus plastid
169NC_006084(AATA)3p412111094111105 Saccharum hybrid cultivar NCo 310 chloroplast
170NC_005973(AATA)3p412106559106570 Oryza nivara chloroplast
171NC_005973(AATA)3p4125570555716 Oryza nivara chloroplast
172NC_005878(AATA)3p4123153731548 Saccharum hybrid cultivar SP-80-3280 chloroplast
173NC_005353(AATA)3p4122603926050 Chlamydomonas reinhardtii chloroplast
174NC_004115(AATA)3p4127679476805 Chaetosphaeridium globosum chloroplast
175NC_003119(AATA)3p4124189741908 Medicago truncatula chloroplast
176NC_003119(AATA)3p41252305241 Medicago truncatula chloroplast
177NC_002762(AATA)3p412106646106657 Triticum aestivum chloroplast
178NC_002652(AATA)3p4123114431155 Euglena longa plastid
179NC_002202(AATA)3p412113693113704 Spinacia oleracea plastid
180NC_002186(AATA)3p4129228092291 Mesostigma viride chloroplast
181NC_001675(AATA)3p4128461384624 Cyanophora paradoxa cyanelle
182NC_001666(AATA)3p412110340110351 Zea mays chloroplast
183NC_001320(AATA)3p412106600106611 Oryza sativa Japonica Group plastid
184NC_001320(AATA)3p4125577055781 Oryza sativa Japonica Group plastid
185NC_001319(AATA)3p4129686496875 Marchantia polymorpha chloroplast