All Repeats of Quercus rubra plastid
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
|---|---|---|---|---|---|---|---|
| 1 | NC_020152 | (TAAA)4 | p4 | 237 | 252 | 16 | Design Primer |
| 2 | NC_020152 | (TTCA)3 | p4 | 1791 | 1802 | 12 | Design Primer |
| 3 | NC_020152 | (T)11 | p1 | 4121 | 4131 | 11 | Design Primer |
| 4 | NC_020152 | (C)11(A)10 | c | 4427 | 4447 | 21 | Design Primer |
| 5 | NC_020152 | (T)10 | p1 | 4684 | 4693 | 10 | Design Primer |
| 6 | NC_020152 | (A)10 | p1 | 4905 | 4914 | 10 | Design Primer |
| 7 | NC_020152 | (A)13 | p1 | 5097 | 5109 | 13 | Design Primer |
| 8 | NC_020152 | (AT)6 | p2 | 6795 | 6806 | 12 | Design Primer |
| 9 | NC_020152 | (T)10 | p1 | 6911 | 6920 | 10 | Design Primer |
| 10 | NC_020152 | (A)12 | p1 | 8457 | 8468 | 12 | Design Primer |
| 11 | NC_020152 | (A)10 | p1 | 9354 | 9363 | 10 | Design Primer |
| 12 | NC_020152 | (A)11 | p1 | 10050 | 10060 | 11 | Design Primer |
| 13 | NC_020152 | (T)12 | p1 | 10168 | 10179 | 12 | Design Primer |
| 14 | NC_020152 | (A)11 | p1 | 13425 | 13435 | 11 | Design Primer |
| 15 | NC_020152 | (T)11gaatataatgaacctatcctctcttctctattcatatttcatattc(A)11tatcaaaacggatcattaatccaagaccagaatattcggaggactcttctgaacaaacaaataattgtcagcaacgttgtttc(T)12caaatccaaagaatttttcttaatttatacgtaggtcatcgattcagcattggataaaaaagaggggttgaaatactcataaattttttccaataaat(AATA)3g(A)12 | c | 13998 | 14283 | 286 | Design Primer |
| 16 | NC_020152 | (A)11 | p1 | 18546 | 18556 | 11 | Design Primer |
| 17 | NC_020152 | (T)10 | p1 | 20517 | 20526 | 10 | Design Primer |
| 18 | NC_020152 | (T)10 | p1 | 20646 | 20655 | 10 | Design Primer |
| 19 | NC_020152 | (T)12 | p1 | 21174 | 21185 | 12 | Design Primer |
| 20 | NC_020152 | (C)13(A)12gaaaagatctactctttactcaagtttccaatttagaccaagcaacatttcattaattca(T)11 | c | 24714 | 24809 | 96 | Design Primer |
| 21 | NC_020152 | (T)10 | p1 | 25190 | 25199 | 10 | Design Primer |
| 22 | NC_020152 | (T)10 | p1 | 28450 | 28459 | 10 | Design Primer |
| 23 | NC_020152 | (T)11 | p1 | 29537 | 29547 | 11 | Design Primer |
| 24 | NC_020152 | (T)11 | p1 | 30159 | 30169 | 11 | Design Primer |
| 25 | NC_020152 | (A)10 | p1 | 30321 | 30330 | 10 | Design Primer |
| 26 | NC_020152 | (T)13 | p1 | 31616 | 31628 | 13 | Design Primer |
| 27 | NC_020152 | (A)10 | p1 | 31985 | 31994 | 10 | Design Primer |
| 28 | NC_020152 | (AAAT)3aaaataagagagcattcccaaggggaatgaaattctgctatttgttctccctttcaaagaaaacgaagagatgaattgatgta(T)10 | c | 33696 | 33800 | 105 | Design Primer |
| 29 | NC_020152 | (A)12 | p1 | 34915 | 34926 | 12 | Design Primer |
| 30 | NC_020152 | (A)15cgataaatctggaaatctgggaagagggatagggatcaacaagttattgaaaattg(T)11 | c | 35094 | 35175 | 82 | Design Primer |
| 31 | NC_020152 | (A)10 | p1 | 35585 | 35594 | 10 | Design Primer |
| 32 | NC_020152 | (TAA)4 | p3 | 35942 | 35953 | 12 | Design Primer |
| 33 | NC_020152 | (TTAAA)3 | p5 | 36374 | 36388 | 15 | Design Primer |
| 34 | NC_020152 | (AT)8 | p2 | 39942 | 39957 | 16 | Design Primer |
| 35 | NC_020152 | (T)11 | p1 | 40088 | 40098 | 11 | Design Primer |
| 36 | NC_020152 | (A)12 | p1 | 40240 | 40251 | 12 | Design Primer |
| 37 | NC_020152 | (A)12 | p1 | 40756 | 40767 | 12 | Design Primer |
| 38 | NC_020152 | (TTA)4 | p3 | 40995 | 41006 | 12 | Design Primer |
| 39 | NC_020152 | (T)11 | p1 | 41378 | 41388 | 11 | Design Primer |
| 40 | NC_020152 | (A)13 | p1 | 41497 | 41509 | 13 | Design Primer |
| 41 | NC_020152 | (A)11 | p1 | 50084 | 50094 | 11 | Design Primer |
| 42 | NC_020152 | (A)10 | p1 | 51718 | 51727 | 10 | Design Primer |
| 43 | NC_020152 | (A)10 | p1 | 52314 | 52323 | 10 | Design Primer |
| 44 | NC_020152 | (TTTA)3 | p4 | 52998 | 53009 | 12 | Design Primer |
| 45 | NC_020152 | (T)10 | p1 | 53341 | 53350 | 10 | Design Primer |
| 46 | NC_020152 | (T)10atttatcctttttatttctattttttattgtttctatttttatatattata(TATT)3tgaatagaaacaa(T)13 | c | 54231 | 54329 | 99 | Design Primer |
| 47 | NC_020152 | (A)12 | p1 | 55117 | 55128 | 12 | Design Primer |
| 48 | NC_020152 | (T)11 | p1 | 55842 | 55852 | 11 | Design Primer |
| 49 | NC_020152 | (T)10 | p1 | 59704 | 59713 | 10 | Design Primer |
| 50 | NC_020152 | (T)10 | p1 | 60177 | 60186 | 10 | Design Primer |
| 51 | NC_020152 | (AT)6 | p2 | 62159 | 62170 | 12 | Design Primer |
| 52 | NC_020152 | (T)10 | p1 | 64195 | 64204 | 10 | Design Primer |
| 53 | NC_020152 | (T)10 | p1 | 64321 | 64330 | 10 | Design Primer |
| 54 | NC_020152 | (AT)8 | p2 | 64671 | 64686 | 16 | Design Primer |
| 55 | NC_020152 | (T)12 | p1 | 65046 | 65057 | 12 | Design Primer |
| 56 | NC_020152 | (T)14 | p1 | 66265 | 66278 | 14 | Design Primer |
| 57 | NC_020152 | (T)11 | p1 | 68712 | 68722 | 11 | Design Primer |
| 58 | NC_020152 | (A)15tagagtaaggttttattagtatagaaaaaattttcatgatatctgatcaatagaa(AT)6 | c | 69128 | 69209 | 82 | Design Primer |
| 59 | NC_020152 | (C)12(T)10 | c | 70817 | 70838 | 22 | Design Primer |
| 60 | NC_020152 | (T)14 | p1 | 71496 | 71509 | 14 | Design Primer |
| 61 | NC_020152 | (ATTA)3 | p4 | 72670 | 72681 | 12 | Design Primer |
| 62 | NC_020152 | (T)11 | p1 | 73475 | 73485 | 11 | Design Primer |
| 63 | NC_020152 | (A)11caaaat(A)10 | c | 76719 | 76745 | 27 | Design Primer |
| 64 | NC_020152 | (A)10 | p1 | 77222 | 77231 | 10 | Design Primer |
| 65 | NC_020152 | (A)10 | p1 | 81539 | 81548 | 10 | Design Primer |
| 66 | NC_020152 | (TA)6 | p2 | 83007 | 83018 | 12 | Design Primer |
| 67 | NC_020152 | (A)10 | p1 | 83992 | 84001 | 10 | Design Primer |
| 68 | NC_020152 | (A)11 | p1 | 85861 | 85871 | 11 | Design Primer |
| 69 | NC_020152 | (A)10gaaacctataattttg(T)11 | c | 87259 | 87295 | 37 | Design Primer |
| 70 | NC_020152 | (ATA)4 | p3 | 88034 | 88045 | 12 | Design Primer |
| 71 | NC_020152 | (T)10 | p1 | 88908 | 88917 | 10 | Design Primer |
| 72 | NC_020152 | (GCAAT)3 | p5 | 105709 | 105723 | 15 | Design Primer |
| 73 | NC_020152 | (T)10 | p1 | 117205 | 117214 | 10 | Design Primer |
| 74 | NC_020152 | (T)12 | p1 | 118737 | 118748 | 12 | Design Primer |
| 75 | NC_020152 | (A)11 | p1 | 118850 | 118860 | 11 | Design Primer |
| 76 | NC_020152 | (A)12t(A)11 | c | 118997 | 119020 | 24 | Design Primer |
| 77 | NC_020152 | (T)10 | p1 | 119153 | 119162 | 10 | Design Primer |
| 78 | NC_020152 | (AAAT)4 | p4 | 119780 | 119795 | 16 | Design Primer |
| 79 | NC_020152 | (A)12 | p1 | 120800 | 120811 | 12 | Design Primer |
| 80 | NC_020152 | (AT)6 | p2 | 124006 | 124017 | 12 | Design Primer |
| 81 | NC_020152 | (ATATTA)3 | p6 | 125128 | 125145 | 18 | Design Primer |
| 82 | NC_020152 | (T)11(TTTTA)3* | c* | 126097 | 126118 | 22 | Design Primer |
| 83 | NC_020152 | (A)11ttgtattctttcta(T)11cgttcctattcttctttcttttctg(A)11 | c | 127580 | 127651 | 72 | Design Primer |
| 84 | NC_020152 | (TCT)4 | p3 | 128007 | 128018 | 12 | Design Primer |
| 85 | NC_020152 | (A)13 | p1 | 130629 | 130641 | 13 | Design Primer |
| 86 | NC_020152 | (AAT)4 | p3 | 133439 | 133450 | 12 | Design Primer |
| 87 | NC_020152 | (T)10 | p1 | 133604 | 133613 | 10 | Design Primer |
| 88 | NC_020152 | (T)13 | p1 | 134181 | 134193 | 13 | Design Primer |
| 89 | NC_020152 | (ATT)4 | p3 | 135019 | 135030 | 12 | Design Primer |
| 90 | NC_020152 | (CATTG)3 | p5 | 146122 | 146136 | 15 | Design Primer |