All Repeats of Dunaliella salina chloroplast
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
---|---|---|---|---|---|---|---|
1 | NC_016732 | (A)11 | p1 | 1692 | 1702 | 11 | Design Primer |
2 | NC_016732 | (GTTT)3 | p4 | 8105 | 8116 | 12 | Design Primer |
3 | NC_016732 | (T)12 | p1 | 11383 | 11394 | 12 | Design Primer |
4 | NC_016732 | (T)15 | p1 | 11506 | 11520 | 15 | Design Primer |
5 | NC_016732 | (A)12 | p1 | 13669 | 13680 | 12 | Design Primer |
6 | NC_016732 | (A)10 | p1 | 15652 | 15661 | 10 | Design Primer |
7 | NC_016732 | (TA)7 | p2 | 16218 | 16231 | 14 | Design Primer |
8 | NC_016732 | (T)13 | p1 | 16959 | 16971 | 13 | Design Primer |
9 | NC_016732 | (A)17 | p1 | 17190 | 17206 | 17 | Design Primer |
10 | NC_016732 | (A)12 | p1 | 17430 | 17441 | 12 | Design Primer |
11 | NC_016732 | (T)15 | p1 | 17696 | 17710 | 15 | Design Primer |
12 | NC_016732 | (A)14 | p1 | 18298 | 18311 | 14 | Design Primer |
13 | NC_016732 | (T)10 | p1 | 18456 | 18465 | 10 | Design Primer |
14 | NC_016732 | (T)13 | p1 | 18621 | 18633 | 13 | Design Primer |
15 | NC_016732 | (T)25 | p1 | 19063 | 19087 | 25 | Design Primer |
16 | NC_016732 | (GCCC)3 | p4 | 19235 | 19246 | 12 | Design Primer |
17 | NC_016732 | (T)14 | p1 | 27169 | 27182 | 14 | Design Primer |
18 | NC_016732 | (T)10aattgaaaagaatttattattaatattttcttttatt(TAAA)3 | c | 27695 | 27753 | 59 | Design Primer |
19 | NC_016732 | (AT)7gacccgtgagggcggcccgccaaaattttc(A)11 | c | 28473 | 28527 | 55 | Design Primer |
20 | NC_016732 | (T)11acacaggctttaaatact(A)11 | c | 30333 | 30372 | 40 | Design Primer |
21 | NC_016732 | (T)11 | p1 | 30616 | 30626 | 11 | Design Primer |
22 | NC_016732 | (T)15 | p1 | 30899 | 30913 | 15 | Design Primer |
23 | NC_016732 | (T)10 | p1 | 31399 | 31408 | 10 | Design Primer |
24 | NC_016732 | (T)10 | p1 | 33731 | 33740 | 10 | Design Primer |
25 | NC_016732 | (T)11 | p1 | 34343 | 34353 | 11 | Design Primer |
26 | NC_016732 | (T)14a(T)13 | c | 34651 | 34678 | 28 | Design Primer |
27 | NC_016732 | (T)15 | p1 | 35211 | 35225 | 15 | Design Primer |
28 | NC_016732 | (A)19 | p1 | 35426 | 35444 | 19 | Design Primer |
29 | NC_016732 | (TAAATG)10 | p6 | 37067 | 37126 | 60 | Design Primer |
30 | NC_016732 | (T)12attttataa(T)17 | c | 37480 | 37517 | 38 | Design Primer |
31 | NC_016732 | (A)11 | p1 | 37751 | 37761 | 11 | Design Primer |
32 | NC_016732 | (T)15aattatgatttttgtaggggtttggatgaaa(T)10 | c | 38036 | 38091 | 56 | Design Primer |
33 | NC_016732 | (ATT)4 | p3 | 38630 | 38641 | 12 | Design Primer |
34 | NC_016732 | (T)12 | p1 | 39941 | 39952 | 12 | Design Primer |
35 | NC_016732 | (T)10 | p1 | 40239 | 40248 | 10 | Design Primer |
36 | NC_016732 | (A)10 | p1 | 43840 | 43849 | 10 | Design Primer |
37 | NC_016732 | (TTAG)3 | p4 | 43951 | 43962 | 12 | Design Primer |
38 | NC_016732 | (T)14 | p1 | 44762 | 44775 | 14 | Design Primer |
39 | NC_016732 | (T)16 | p1 | 45451 | 45466 | 16 | Design Primer |
40 | NC_016732 | (T)10 | p1 | 46328 | 46337 | 10 | Design Primer |
41 | NC_016732 | (ATTT)3 | p4 | 47498 | 47509 | 12 | Design Primer |
42 | NC_016732 | (T)11gag(A)14 | c | 47832 | 47859 | 28 | Design Primer |
43 | NC_016732 | (T)14attttttttaaaagaacataaaaatgtatattacatctttaata(T)19agtatagtatttgtaactatctattaatattaatt(AATA)3aaaatttataaaattttactttgctaaaattttttcttttaattatttttagcaagtttattcttctttaacttatttattattataacg(T)13 | c | 48783 | 49009 | 227 | Design Primer |
44 | NC_016732 | (A)16 | p1 | 49389 | 49404 | 16 | Design Primer |
45 | NC_016732 | (A)13 | p1 | 50256 | 50268 | 13 | Design Primer |
46 | NC_016732 | (A)19 | p1 | 50462 | 50480 | 19 | Design Primer |
47 | NC_016732 | (G)11 | p1 | 58203 | 58213 | 11 | Design Primer |
48 | NC_016732 | (T)10atttttatgtacgtatttgtatatacatacaataattaatattaataatgtatattatgcatttaaattattcgtatatatata(T)11 | c | 58587 | 58691 | 105 | Design Primer |
49 | NC_016732 | (AATA)3 | p4 | 59362 | 59373 | 12 | Design Primer |
50 | NC_016732 | (A)12 | p1 | 61540 | 61551 | 12 | Design Primer |
51 | NC_016732 | (A)11 | p1 | 62195 | 62205 | 11 | Design Primer |
52 | NC_016732 | (TTA)5 | p3 | 62413 | 62427 | 15 | Design Primer |
53 | NC_016732 | (G)13 | p1 | 63287 | 63299 | 13 | Design Primer |
54 | NC_016732 | (A)12tttataacccgtgagggcaactttataaaatttttttttaccgcttaggctaagacctggttcgtcgt(A)12ttatttcttatt(TTTA)3 | c | 64505 | 64620 | 116 | Design Primer |
55 | NC_016732 | (TAA)4 | p3 | 67429 | 67440 | 12 | Design Primer |
56 | NC_016732 | (T)21aatatctaaaga(T)13aaatttagcctgctacaggaatcgaacccgcaacctttggtttacaaaaccaatactctaccgattgagttaaacaggcttc(A)21tg(A)17 | c | 67658 | 67825 | 168 | Design Primer |
57 | NC_016732 | (T)13 | p1 | 68286 | 68298 | 13 | Design Primer |
58 | NC_016732 | (T)10ctaa(ATTT)3 | c | 73614 | 73639 | 26 | Design Primer |
59 | NC_016732 | (T)10 | p1 | 73851 | 73860 | 10 | Design Primer |
60 | NC_016732 | (A)10 | p1 | 75319 | 75328 | 10 | Design Primer |
61 | NC_016732 | (A)10 | p1 | 77498 | 77507 | 10 | Design Primer |
62 | NC_016732 | (TA)6 | p2 | 79523 | 79534 | 12 | Design Primer |
63 | NC_016732 | (A)20tttctttggagccccccctccccgtgagggggctcacgggacaagcttccggt(A)11 | c | 81109 | 81192 | 84 | Design Primer |
64 | NC_016732 | (AT)6 | p2 | 81308 | 81319 | 12 | Design Primer |
65 | NC_016732 | (T)10at(A)10tttttcttaagttcaaaaacaa(TTAT)3acaaataaataatatatttgaaacgtttaattat(A)11gaaaatattactttctttctaaaatttatgctagaataaattaaagccataaacac(AT)7 | c | 81823 | 81993 | 171 | Design Primer |
66 | NC_016732 | (AATA)3 | p4 | 82351 | 82362 | 12 | Design Primer |
67 | NC_016732 | (A)13 | p1 | 83188 | 83200 | 13 | Design Primer |
68 | NC_016732 | (A)12tttctaaaaagtccgctcgtagagaagaaaattctttaagagaagaaaatttataaaattt(A)11 | c | 83873 | 83956 | 84 | Design Primer |
69 | NC_016732 | (T)17aaggtgagtaggatcttcagagactttatgtttcctaacaaacattagaaataaaaat(A)12 | c | 84100 | 84186 | 87 | Design Primer |
70 | NC_016732 | (A)11 | p1 | 84486 | 84496 | 11 | Design Primer |
71 | NC_016732 | (TAA)4 | p3 | 85104 | 85115 | 12 | Design Primer |
72 | NC_016732 | (A)14 | p1 | 86501 | 86514 | 14 | Design Primer |
73 | NC_016732 | (TTTTTA)3(T)10 | c | 87844 | 87871 | 28 | Design Primer |
74 | NC_016732 | (A)16 | p1 | 88062 | 88077 | 16 | Design Primer |
75 | NC_016732 | (T)10 | p1 | 88475 | 88484 | 10 | Design Primer |
76 | NC_016732 | (TA)7 | p2 | 91048 | 91061 | 14 | Design Primer |
77 | NC_016732 | (T)12 | p1 | 91377 | 91388 | 12 | Design Primer |
78 | NC_016732 | (A)13 | p1 | 91758 | 91770 | 13 | Design Primer |
79 | NC_016732 | (A)10 | p1 | 92275 | 92284 | 10 | Design Primer |
80 | NC_016732 | (T)21 | p1 | 92919 | 92939 | 21 | Design Primer |
81 | NC_016732 | (T)14 | p1 | 93523 | 93536 | 14 | Design Primer |
82 | NC_016732 | (T)12 | p1 | 93948 | 93959 | 12 | Design Primer |
83 | NC_016732 | (GCCC)3gtgagggaaacgtctaaaaaaaaatttccggacaacccgtcccgtga(G)11 | c | 94397 | 94466 | 70 | Design Primer |
84 | NC_016732 | (A)13 | p1 | 95738 | 95750 | 13 | Design Primer |
85 | NC_016732 | (A)13 | p1 | 96184 | 96196 | 13 | Design Primer |
86 | NC_016732 | (A)11 | p1 | 97298 | 97308 | 11 | Design Primer |
87 | NC_016732 | (A)22 | p1 | 97581 | 97602 | 22 | Design Primer |
88 | NC_016732 | (T)10 | p1 | 101445 | 101454 | 10 | Design Primer |
89 | NC_016732 | (A)12taaatagaaaattccgaaggaatttctcggaagaaattccttcggaattttcttccgaaaaaattatttttctatgttataatag(A)10 | c | 102117 | 102223 | 107 | Design Primer |
90 | NC_016732 | (A)12 | p1 | 105052 | 105063 | 12 | Design Primer |
91 | NC_016732 | (T)11 | p1 | 106006 | 106016 | 11 | Design Primer |
92 | NC_016732 | (A)17 | p1 | 106782 | 106798 | 17 | Design Primer |
93 | NC_016732 | (AT)7ttgaaatgttttaa(T)12aatc(T)10 | c | 107074 | 107127 | 54 | Design Primer |
94 | NC_016732 | (TAT)4 | p3 | 107501 | 107512 | 12 | Design Primer |
95 | NC_016732 | (T)25 | p1 | 118389 | 118413 | 25 | Design Primer |
96 | NC_016732 | (A)11 | p1 | 118630 | 118640 | 11 | Design Primer |
97 | NC_016732 | (A)10 | p1 | 119060 | 119069 | 10 | Design Primer |
98 | NC_016732 | (T)11 | p1 | 122353 | 122363 | 11 | Design Primer |
99 | NC_016732 | (TTC)4gtaggtcacttatggcatgctggtcgtgctcg(TGC)4 | c | 122817 | 122872 | 56 | Design Primer |
100 | NC_016732 | (A)15cacaaacaaaaatgaaaataattaattttttgttattaaaattcgaatctgatttaaaacattctgctaaattttatttagagatttcataattct(TA)7 | c | 123249 | 123373 | 125 | Design Primer |
101 | NC_016732 | (T)10 | p1 | 123787 | 123796 | 10 | Design Primer |
102 | NC_016732 | (T)13 | p1 | 127126 | 127138 | 13 | Design Primer |
103 | NC_016732 | (A)10taagggtacttataagaataaaaacgaaaaagatgagaattgacaaacgaaacaattctgataaattaagaagcaagggaatgttc(A)14 | c | 127892 | 128001 | 110 | Design Primer |
104 | NC_016732 | (A)10 | p1 | 128427 | 128436 | 10 | Design Primer |
105 | NC_016732 | (A)12 | p1 | 129200 | 129211 | 12 | Design Primer |
106 | NC_016732 | (AAT)4 | p3 | 130012 | 130023 | 12 | Design Primer |
107 | NC_016732 | (TTTTTA)7 | p6 | 131421 | 131462 | 42 | Design Primer |
108 | NC_016732 | (A)11 | p1 | 136908 | 136918 | 11 | Design Primer |
109 | NC_016732 | (ATATGA)3 | p6 | 141566 | 141583 | 18 | Design Primer |
110 | NC_016732 | (A)11 | p1 | 141733 | 141743 | 11 | Design Primer |
111 | NC_016732 | (T)11 | p1 | 146143 | 146153 | 11 | Design Primer |
112 | NC_016732 | (A)15 | p1 | 146364 | 146378 | 15 | Design Primer |
113 | NC_016732 | (T)11cggcgggtctgttttctttgagaaaaatccgcccgtgaggaaaacgtct(A)10 | c | 146534 | 146603 | 70 | Design Primer |
114 | NC_016732 | (A)14(TA)6 | c | 146979 | 147004 | 26 | Design Primer |
115 | NC_016732 | (A)10gatagttattc(T)10gctttttttgacatacgatgtccattactagatagatactaaatttatatctagt(A)12 | c | 147231 | 147328 | 98 | Design Primer |
116 | NC_016732 | (A)10 | p1 | 147457 | 147466 | 10 | Design Primer |
117 | NC_016732 | (TA)7(AT)7 | c | 147981 | 148008 | 28 | Design Primer |
118 | NC_016732 | (A)11 | p1 | 148196 | 148206 | 11 | Design Primer |
119 | NC_016732 | (A)27 | p1 | 150669 | 150695 | 27 | Design Primer |
120 | NC_016732 | (ATAAAT)9 | p6 | 151258 | 151311 | 54 | Design Primer |
121 | NC_016732 | (A)17 | p1 | 151804 | 151820 | 17 | Design Primer |
122 | NC_016732 | (T)11at(A)12taacttgggaaaattgagat(A)15 | c | 156150 | 156209 | 60 | Design Primer |
123 | NC_016732 | (T)11 | p1 | 156313 | 156323 | 11 | Design Primer |
124 | NC_016732 | (A)10 | p1 | 157746 | 157755 | 10 | Design Primer |
125 | NC_016732 | (A)12 | p1 | 158960 | 158971 | 12 | Design Primer |
126 | NC_016732 | (A)12 | p1 | 159587 | 159598 | 12 | Design Primer |
127 | NC_016732 | (AT)6 | p2 | 160594 | 160605 | 12 | Design Primer |
128 | NC_016732 | (A)17 | p1 | 160964 | 160980 | 17 | Design Primer |
129 | NC_016732 | (TTAT)4tttca(T)10 | c | 161741 | 161771 | 31 | Design Primer |
130 | NC_016732 | (A)14ttttgacccgtgaagggaacatatgaaaatattttaagaatattaaaaat(A)14(CA)6 | c | 162053 | 162142 | 90 | Design Primer |
131 | NC_016732 | (A)14cacacacaaaaatgccacgtcatccatt(A)10 | c | 163325 | 163376 | 52 | Design Primer |
132 | NC_016732 | (AAAATA)4 | p6 | 163859 | 163882 | 24 | Design Primer |
133 | NC_016732 | (T)13 | p1 | 164359 | 164371 | 13 | Design Primer |
134 | NC_016732 | (A)11 | p1 | 164624 | 164634 | 11 | Design Primer |
135 | NC_016732 | (A)13 | p1 | 167835 | 167847 | 13 | Design Primer |
136 | NC_016732 | (T)10 | p1 | 169788 | 169797 | 10 | Design Primer |
137 | NC_016732 | (TTTCT)3 | p5 | 170009 | 170023 | 15 | Design Primer |
138 | NC_016732 | (A)16ttttaagtcggacccgtgagggaaaccaaagaaaataaaa(T)12 | c | 170530 | 170597 | 68 | Design Primer |
139 | NC_016732 | (A)13 | p1 | 170958 | 170970 | 13 | Design Primer |
140 | NC_016732 | (A)10 | p1 | 172273 | 172282 | 10 | Design Primer |
141 | NC_016732 | (T)10 | p1 | 172483 | 172492 | 10 | Design Primer |
142 | NC_016732 | (T)16atttagatttatttttattaaaaaaatatctttataaataaattttagcgaagcaaaaac(A)10 | c | 173280 | 173365 | 86 | Design Primer |
143 | NC_016732 | (T)11 | p1 | 173504 | 173514 | 11 | Design Primer |
144 | NC_016732 | (A)11 | p1 | 176453 | 176463 | 11 | Design Primer |
145 | NC_016732 | (T)12(A)13t(A)13 | c | 182614 | 182652 | 39 | Design Primer |
146 | NC_016732 | (T)11 | p1 | 187660 | 187670 | 11 | Design Primer |
147 | NC_016732 | (T)12 | p1 | 188014 | 188025 | 12 | Design Primer |
148 | NC_016732 | (GCCC)3 | p4 | 188534 | 188545 | 12 | Design Primer |
149 | NC_016732 | (TATGTT)14 | p6 | 189730 | 189813 | 84 | Design Primer |
150 | NC_016732 | (A)11 | p1 | 190137 | 190147 | 11 | Design Primer |
151 | NC_016732 | (T)11 | p1 | 195827 | 195837 | 11 | Design Primer |
152 | NC_016732 | (T)12 | p1 | 196529 | 196540 | 12 | Design Primer |
153 | NC_016732 | (T)11 | p1 | 197033 | 197043 | 11 | Design Primer |
154 | NC_016732 | (T)18 | p1 | 197611 | 197628 | 18 | Design Primer |
155 | NC_016732 | (TAT)4 | p3 | 199182 | 199193 | 12 | Design Primer |
156 | NC_016732 | (T)11 | p1 | 199776 | 199786 | 11 | Design Primer |
157 | NC_016732 | (TA)6 | p2 | 201911 | 201922 | 12 | Design Primer |
158 | NC_016732 | (TTATTT)5 | p6 | 202142 | 202171 | 30 | Design Primer |
159 | NC_016732 | (T)10 | p1 | 205030 | 205039 | 10 | Design Primer |
160 | NC_016732 | (A)14tttttgat(A)11 | c | 205795 | 205827 | 33 | Design Primer |
161 | NC_016732 | (T)13 | p1 | 210763 | 210775 | 13 | Design Primer |
162 | NC_016732 | (TA)8 | p2 | 213459 | 213474 | 16 | Design Primer |
163 | NC_016732 | (TTAT)3 | p4 | 214347 | 214358 | 12 | Design Primer |
164 | NC_016732 | (A)10 | p1 | 214574 | 214583 | 10 | Design Primer |
165 | NC_016732 | (T)10 | p1 | 217978 | 217987 | 10 | Design Primer |
166 | NC_016732 | (T)10aattattatttttttaattattattttttttaattattattttttttaatta(T)13aatta(T)23 | c | 220356 | 220458 | 103 | Design Primer |
167 | NC_016732 | (T)10gagttataaag(T)11 | c | 221179 | 221210 | 32 | Design Primer |
168 | NC_016732 | (T)13 | p1 | 221368 | 221380 | 13 | Design Primer |
169 | NC_016732 | (CGGG)3ccgttttctcaaagaaaacggacccgccgaaaaaaaatt(A)13 | c | 221602 | 221665 | 64 | Design Primer |
170 | NC_016732 | (T)14ctc(A)11 | c | 225369 | 225396 | 28 | Design Primer |
171 | NC_016732 | (T)13 | p1 | 228489 | 228501 | 13 | Design Primer |
172 | NC_016732 | (TA)8gaatacatatatataaatatataagttatatataatatataagtttaatta(T)10 | c | 228962 | 229038 | 77 | Design Primer |
173 | NC_016732 | (T)17 | p1 | 229463 | 229479 | 17 | Design Primer |
174 | NC_016732 | (TTA)4 | p3 | 230211 | 230222 | 12 | Design Primer |
175 | NC_016732 | (T)10(A)22 | c | 230927 | 230958 | 32 | Design Primer |
176 | NC_016732 | (A)11 | p1 | 231803 | 231813 | 11 | Design Primer |
177 | NC_016732 | (A)21tttcttccgaaaataaaattttataaatttactttgttaattttctaaaaaatt(A)15 | c | 232454 | 232543 | 90 | Design Primer |
178 | NC_016732 | (A)13tgccattcgtaagtaacttgtctgtttttatattaagtttaattttttatgtg(T)10gtataaaaaaagaggaactatgttacaatatt(A)10tatataaaaatttaaaccttttttgtataaattatggaagtgatattactcctcgtattaat(AAATAA)3aagagtttggagatcttttagaagtttagattagaatctt(A)15 | c | 232940 | 233192 | 253 | Design Primer |
179 | NC_016732 | (AT)6 | p2 | 233475 | 233486 | 12 | Design Primer |
180 | NC_016732 | (A)12 | p1 | 233639 | 233650 | 12 | Design Primer |
181 | NC_016732 | (TTATG)3tatagaaaat(A)15 | c | 234270 | 234309 | 40 | Design Primer |
182 | NC_016732 | (AATT)3 | p4 | 235690 | 235701 | 12 | Design Primer |
183 | NC_016732 | (A)10 | p1 | 237161 | 237170 | 10 | Design Primer |
184 | NC_016732 | (TA)8 | p2 | 237736 | 237751 | 16 | Design Primer |
185 | NC_016732 | (T)12agta(T)14(TTAT)3* | c* | 243186 | 243225 | 40 | Design Primer |
186 | NC_016732 | (T)14gaaagt(A)10 | c | 243566 | 243595 | 30 | Design Primer |
187 | NC_016732 | (T)21 | p1 | 244061 | 244081 | 21 | Design Primer |
188 | NC_016732 | (AAT)10 | p3 | 248041 | 248070 | 30 | Design Primer |
189 | NC_016732 | (T)12 | p1 | 252761 | 252772 | 12 | Design Primer |
190 | NC_016732 | (ATATAA)3 | p6 | 252927 | 252944 | 18 | Design Primer |
191 | NC_016732 | (A)10 | p1 | 254501 | 254510 | 10 | Design Primer |
192 | NC_016732 | (T)11 | p1 | 254641 | 254651 | 11 | Design Primer |
193 | NC_016732 | (ATTCAT)3 | p6 | 254799 | 254816 | 18 | Design Primer |
194 | NC_016732 | (T)11 | p1 | 259466 | 259476 | 11 | Design Primer |
195 | NC_016732 | (AAATAA)7 | p6 | 264919 | 264960 | 42 | Design Primer |
196 | NC_016732 | (ATT)4 | p3 | 266361 | 266372 | 12 | Design Primer |
197 | NC_016732 | (T)12 | p1 | 267173 | 267184 | 12 | Design Primer |
198 | NC_016732 | (T)10 | p1 | 267948 | 267957 | 10 | Design Primer |
199 | NC_016732 | (T)14gaacattcccttgcttcttaatttatcagaattgtttcgtttgtcaattctcatctttttcgtttttattcttataagtaccctta(T)10 | c | 268383 | 268492 | 110 | Design Primer |