All Repeats of Silene vulgaris mitochondrion chromosome 1
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
---|---|---|---|---|---|---|---|
1 | NC_016406 | (TAAG)3 | p4 | 4161 | 4172 | 12 | Design Primer |
2 | NC_016406 | (TCTT)3 | p4 | 4506 | 4517 | 12 | Design Primer |
3 | NC_016406 | (CTTT)3 | p4 | 4950 | 4961 | 12 | Design Primer |
4 | NC_016406 | (AGGAAT)3 | p6 | 7667 | 7684 | 18 | Design Primer |
5 | NC_016406 | (AAAAG)7 | p5 | 8324 | 8358 | 35 | Design Primer |
6 | NC_016406 | (CTTT)3atttaaatgaaattaaaataaatttt(TTAAA)3 | c | 11721 | 11773 | 53 | Design Primer |
7 | NC_016406 | (CTTC)3 | p4 | 13503 | 13514 | 12 | Design Primer |
8 | NC_016406 | (C)11 | p1 | 20910 | 20920 | 11 | Design Primer |
9 | NC_016406 | (A)10 | p1 | 21148 | 21157 | 10 | Design Primer |
10 | NC_016406 | (ATA)4 | p3 | 21709 | 21720 | 12 | Design Primer |
11 | NC_016406 | (A)10 | p1 | 22684 | 22693 | 10 | Design Primer |
12 | NC_016406 | (TA)6 | p2 | 23682 | 23693 | 12 | Design Primer |
13 | NC_016406 | (TTTC)3 | p4 | 24498 | 24509 | 12 | Design Primer |
14 | NC_016406 | (TA)6 | p2 | 28089 | 28100 | 12 | Design Primer |
15 | NC_016406 | (A)10 | p1 | 30542 | 30551 | 10 | Design Primer |
16 | NC_016406 | (CAATA)3 | p5 | 34823 | 34837 | 15 | Design Primer |
17 | NC_016406 | (A)12 | p1 | 36725 | 36736 | 12 | Design Primer |
18 | NC_016406 | (TCCTA)3 | p5 | 49428 | 49442 | 15 | Design Primer |
19 | NC_016406 | (CTTT)3 | p4 | 50506 | 50517 | 12 | Design Primer |
20 | NC_016406 | (CTAG)3 | p4 | 53421 | 53432 | 12 | Design Primer |
21 | NC_016406 | (ACTG)3 | p4 | 55252 | 55263 | 12 | Design Primer |
22 | NC_016406 | (A)12 | p1 | 55864 | 55875 | 12 | Design Primer |
23 | NC_016406 | (AGAA)3 | p4 | 58103 | 58114 | 12 | Design Primer |
24 | NC_016406 | (ACGA)3 | p4 | 59507 | 59518 | 12 | Design Primer |
25 | NC_016406 | (TA)6 | p2 | 61409 | 61420 | 12 | Design Primer |
26 | NC_016406 | (A)10 | p1 | 62969 | 62978 | 10 | Design Primer |
27 | NC_016406 | (AT)6 | p2 | 64422 | 64433 | 12 | Design Primer |
28 | NC_016406 | (TCAGGC)3 | p6 | 66609 | 66626 | 18 | Design Primer |
29 | NC_016406 | (AAGA)3 | p4 | 72036 | 72047 | 12 | Design Primer |
30 | NC_016406 | (CTATA)3 | p5 | 73035 | 73049 | 15 | Design Primer |
31 | NC_016406 | (A)11 | p1 | 74712 | 74722 | 11 | Design Primer |
32 | NC_016406 | (TAAAT)3ta(TAT)4 | c | 78569 | 78597 | 29 | Design Primer |
33 | NC_016406 | (T)12 | p1 | 81238 | 81249 | 12 | Design Primer |
34 | NC_016406 | (CAAAG)3 | p5 | 82405 | 82419 | 15 | Design Primer |
35 | NC_016406 | (CTT)4 | p3 | 84713 | 84724 | 12 | Design Primer |
36 | NC_016406 | (CTT)4 | p3 | 85846 | 85857 | 12 | Design Primer |
37 | NC_016406 | (GAA)4 | p3 | 87512 | 87523 | 12 | Design Primer |
38 | NC_016406 | (AGAAT)4 | p5 | 88092 | 88111 | 20 | Design Primer |
39 | NC_016406 | (AAC)4 | p3 | 89091 | 89102 | 12 | Design Primer |
40 | NC_016406 | (AAGA)3 | p4 | 95437 | 95448 | 12 | Design Primer |
41 | NC_016406 | (CTTC)3 | p4 | 97346 | 97357 | 12 | Design Primer |
42 | NC_016406 | (GTA)4 | p3 | 102405 | 102416 | 12 | Design Primer |
43 | NC_016406 | (TA)6 | p2 | 103594 | 103605 | 12 | Design Primer |
44 | NC_016406 | (TTCT)3 | p4 | 106096 | 106107 | 12 | Design Primer |
45 | NC_016406 | (AAGA)3 | p4 | 112707 | 112718 | 12 | Design Primer |
46 | NC_016406 | (TTTA)3 | p4 | 114797 | 114808 | 12 | Design Primer |
47 | NC_016406 | (CTTAA)3 | p5 | 117660 | 117674 | 15 | Design Primer |
48 | NC_016406 | (T)13 | p1 | 123343 | 123355 | 13 | Design Primer |
49 | NC_016406 | (TA)6 | p2 | 123965 | 123976 | 12 | Design Primer |
50 | NC_016406 | (TTC)4 | p3 | 127849 | 127860 | 12 | Design Primer |
51 | NC_016406 | (A)10 | p1 | 129849 | 129858 | 10 | Design Primer |
52 | NC_016406 | (TAAAT)3 | p5 | 133772 | 133786 | 15 | Design Primer |
53 | NC_016406 | (CGAT)3 | p4 | 137071 | 137082 | 12 | Design Primer |
54 | NC_016406 | (A)12 | p1 | 142240 | 142251 | 12 | Design Primer |
55 | NC_016406 | (ATTAAA)3 | p6 | 142881 | 142898 | 18 | Design Primer |
56 | NC_016406 | (T)13 | p1 | 148415 | 148427 | 13 | Design Primer |
57 | NC_016406 | (AGAA)3 | p4 | 149436 | 149447 | 12 | Design Primer |
58 | NC_016406 | (TTA)4 | p3 | 153104 | 153115 | 12 | Design Primer |
59 | NC_016406 | (AAG)4 | p3 | 154693 | 154704 | 12 | Design Primer |
60 | NC_016406 | (TATG)3 | p4 | 156118 | 156129 | 12 | Design Primer |
61 | NC_016406 | (TATGA)3 | p5 | 159115 | 159129 | 15 | Design Primer |
62 | NC_016406 | (ATTAA)3 | p5 | 161670 | 161684 | 15 | Design Primer |
63 | NC_016406 | (A)10 | p1 | 162454 | 162463 | 10 | Design Primer |
64 | NC_016406 | (GAAAA)4ggggataaactccttaaagaagaatctttagtaaccttttttttgatgtcacagtctttattctttt(TTA)4 | c | 166545 | 166643 | 99 | Design Primer |
65 | NC_016406 | (AT)6 | p2 | 170229 | 170240 | 12 | Design Primer |
66 | NC_016406 | (GGTT)4 | p4 | 174771 | 174786 | 16 | Design Primer |
67 | NC_016406 | (A)10 | p1 | 177262 | 177271 | 10 | Design Primer |
68 | NC_016406 | (GAAAA)4ggggataaactccttaaagaagaatctttagtaaccttttttttgatgtcacagtctttattctttt(TTA)4 | c | 181353 | 181451 | 99 | Design Primer |
69 | NC_016406 | (CAAAG)4 | p5 | 183689 | 183708 | 20 | Design Primer |
70 | NC_016406 | (GAAAT)6 | p5 | 196612 | 196641 | 30 | Design Primer |
71 | NC_016406 | (TCGT)3 | p4 | 199442 | 199453 | 12 | Design Primer |
72 | NC_016406 | (ATTGG)3 | p5 | 199573 | 199587 | 15 | Design Primer |
73 | NC_016406 | (CTTT)3 | p4 | 204102 | 204113 | 12 | Design Primer |
74 | NC_016406 | (GGCAAA)4 | p6 | 213000 | 213023 | 24 | Design Primer |
75 | NC_016406 | (ATATA)3 | p5 | 214557 | 214571 | 15 | Design Primer |
76 | NC_016406 | (A)11 | p1 | 215510 | 215520 | 11 | Design Primer |
77 | NC_016406 | (A)10 | p1 | 216041 | 216050 | 10 | Design Primer |
78 | NC_016406 | (TTTAA)3aaaatttattttaatttcatttaaat(AAAG)3 | c | 220486 | 220538 | 53 | Design Primer |
79 | NC_016406 | (T)10 | p1 | 224378 | 224387 | 10 | Design Primer |
80 | NC_016406 | (T)10 | p1 | 225344 | 225353 | 10 | Design Primer |
81 | NC_016406 | (TCCTA)3 | p5 | 225936 | 225950 | 15 | Design Primer |
82 | NC_016406 | (TAAGTA)3 | p6 | 228955 | 228972 | 18 | Design Primer |
83 | NC_016406 | (AAGGA)3 | p5 | 232400 | 232414 | 15 | Design Primer |
84 | NC_016406 | (TTATA)3 | p5 | 242504 | 242518 | 15 | Design Primer |
85 | NC_016406 | (TAT)4 | p3 | 242788 | 242799 | 12 | Design Primer |
86 | NC_016406 | (A)10 | p1 | 246024 | 246033 | 10 | Design Primer |
87 | NC_016406 | (TCCTA)3 | p5 | 246562 | 246576 | 15 | Design Primer |
88 | NC_016406 | (TATTA)3 | p5 | 252537 | 252551 | 15 | Design Primer |
89 | NC_016406 | (ATA)4 | p3 | 257463 | 257474 | 12 | Design Primer |
90 | NC_016406 | (CTTT)3 | p4 | 262328 | 262339 | 12 | Design Primer |
91 | NC_016406 | (T)10 | p1 | 268232 | 268241 | 10 | Design Primer |
92 | NC_016406 | (A)10 | p1 | 275329 | 275338 | 10 | Design Primer |
93 | NC_016406 | (CCGC)3 | p4 | 275487 | 275498 | 12 | Design Primer |
94 | NC_016406 | (AGGAT)3 | p5 | 282756 | 282770 | 15 | Design Primer |
95 | NC_016406 | (TA)6 | p2 | 288731 | 288742 | 12 | Design Primer |
96 | NC_016406 | (A)10 | p1 | 291184 | 291193 | 10 | Design Primer |
97 | NC_016406 | (TAGCA)3 | p5 | 291934 | 291948 | 15 | Design Primer |
98 | NC_016406 | (GGCC)3 | p4 | 293123 | 293134 | 12 | Design Primer |
99 | NC_016406 | (CCCAA)6 | p5 | 294447 | 294476 | 30 | Design Primer |
100 | NC_016406 | (AAACTA)3 | p6 | 295012 | 295029 | 18 | Design Primer |
101 | NC_016406 | (A)10 | p1 | 296529 | 296538 | 10 | Design Primer |
102 | NC_016406 | (AGAA)3 | p4 | 298932 | 298943 | 12 | Design Primer |
103 | NC_016406 | (TGCC)3 | p4 | 303510 | 303521 | 12 | Design Primer |
104 | NC_016406 | (ATC)4 | p3 | 306978 | 306989 | 12 | Design Primer |
105 | NC_016406 | (GA)7 | p2 | 309949 | 309962 | 14 | Design Primer |
106 | NC_016406 | (A)10 | p1 | 323886 | 323895 | 10 | Design Primer |
107 | NC_016406 | (TA)6 | p2 | 324628 | 324639 | 12 | Design Primer |
108 | NC_016406 | (CTA)4 | p3 | 325816 | 325827 | 12 | Design Primer |
109 | NC_016406 | (TTAAA)3 | p5 | 329289 | 329303 | 15 | Design Primer |
110 | NC_016406 | (ATA)4 | p3 | 331652 | 331663 | 12 | Design Primer |
111 | NC_016406 | (ATTTA)3 | p5 | 334145 | 334159 | 15 | Design Primer |
112 | NC_016406 | (TAG)4tataggaagggtaatgcaatgatgagtggttctcgactgaccaccctctatctgaacctgaatctgactaagccggtc(TAG)5 | c | 336703 | 336807 | 105 | Design Primer |
113 | NC_016406 | (AGGT)3 | p4 | 337065 | 337076 | 12 | Design Primer |
114 | NC_016406 | (AAG)4 | p3 | 339106 | 339117 | 12 | Design Primer |
115 | NC_016406 | (CTTT)3 | p4 | 342786 | 342797 | 12 | Design Primer |
116 | NC_016406 | (TAA)4 | p3 | 343381 | 343392 | 12 | Design Primer |
117 | NC_016406 | (GTA)4 | p3 | 348120 | 348131 | 12 | Design Primer |
118 | NC_016406 | (TA)6 | p2 | 349309 | 349320 | 12 | Design Primer |
119 | NC_016406 | (AATT)3cttttttaatattttaattttaaaaaaattctattagtg(A)10 | c | 351123 | 351183 | 61 | Design Primer |
120 | NC_016406 | (TATTG)10 | p5 | 355514 | 355563 | 50 | Design Primer |
121 | NC_016406 | (GAAA)3 | p4 | 367167 | 367178 | 12 | Design Primer |
122 | NC_016406 | (T)10 | p1 | 373401 | 373410 | 10 | Design Primer |
123 | NC_016406 | (GCC)4 | p3 | 380736 | 380747 | 12 | Design Primer |
124 | NC_016406 | (TTTAA)3tatttt(ATA)4 | c | 385708 | 385740 | 33 | Design Primer |
125 | NC_016406 | (ATA)4 | p3 | 387920 | 387931 | 12 | Design Primer |
126 | NC_016406 | (ATA)4 | p3 | 389742 | 389753 | 12 | Design Primer |