Compound Repeats of Chaetomium thermophilum var. thermophilum DSM 1495 mitochondrion
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| S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
|---|---|---|---|---|---|---|---|
| 1 | NC_015893 | (AGCT)3ctattatgtcctccgctgcgtttcaacattatatg(TA)8ctattgaatagtaagttatatgctcggcggttgt(TA)13 | c | 3487 | 3609 | 123 | Design Primer |
| 2 | NC_015893 | (AT)10tactagtgcgctg(GTACT)3 | c | 5841 | 5888 | 48 | Design Primer |
| 3 | NC_015893 | (G)12agggtccagtctttgttatgttgcactccgaggtacttttgccatggcacttacactctccctggacccttctggatcctagtaagttctacttagac(ACGT)8tgaccacac(TATTG)3 | c | 6004 | 6169 | 166 | Design Primer |
| 4 | NC_015893 | (ACGT)3ggaggtctcatagtagttctgtcgttggttgggacgaa(G)11actagccatacgcaagggataaagagataagtctaagcatcaaaaacaaaaacaaggtagaggaggccatccgaccaag(GCA)4 | c | 15313 | 15464 | 152 | Design Primer |
| 5 | NC_015893 | (AT)6ttatatatgtataaataatg(GTA)4 | c | 15623 | 15666 | 44 | Design Primer |
| 6 | NC_015893 | (G)10cgaaaattgcgggttggtgtaatagttaacatttttagttcatgcctaaaagaaaaaggtgcaaatcctttacccgcatatttaaatataa(AT)8 | c | 15897 | 16013 | 117 | Design Primer |
| 7 | NC_015893 | (TG)7tcacagccgctgcagtatagacgtagtgactct(TA)10 | c | 17495 | 17561 | 67 | Design Primer |
| 8 | NC_015893 | (CGTA)3cggtacatatttagttatattaatgagattatttattaatattctagtattttattgttatt(TTA)12 | c | 24772 | 24881 | 110 | Design Primer |
| 9 | NC_015893 | (AT)8acatatg(TA)12 | c | 26864 | 26910 | 47 | Design Primer |
| 10 | NC_015893 | (TAA)4acactaaaattattgaaacacataaatcatttgtctattaagtttaaactaaaaatattgttcgttatttcggcatctgttccattct(GTTTA)4aatatcgcgcatgacgtacgtatgtatgcgtgggtggttgtatactatt(GTA)8 | c | 35433 | 35625 | 193 | Design Primer |
| 11 | NC_015893 | (TA)10tttatatttatatttt(TATTTA)3 | c | 42481 | 42534 | 54 | Design Primer |
| 12 | NC_015893 | (A)10ttctatgaataagaatgattagaattatcttgcttaaaaggaaagtttccggccccttt(G)10 | c | 44604 | 44682 | 79 | Design Primer |
| 13 | NC_015893 | (GGCT)3agctagcataat(A)10 | c | 47081 | 47114 | 34 | Design Primer |
| 14 | NC_015893 | (T)11agtagtattgtatttttttttattaggagatggacacttggaaag(A)10 | c | 50568 | 50633 | 66 | Design Primer |
| 15 | NC_015893 | (AATAC)3(ATTAC)3attatattataaaagaaaaaaaat(TTGTA)3ttt(TATTG)3 | c | 54450 | 54536 | 87 | Design Primer |
| 16 | NC_015893 | (TTAT)3tttatttataggtagtaaagtggttaaagctgctgt(A)12 | c | 58253 | 58312 | 60 | Design Primer |
| 17 | NC_015893 | (ATTA)3gggatttgttttgttatgaactctaatttttataaaataaaaactaaataagta(AT)12 | c | 67612 | 67701 | 90 | Design Primer |
| 18 | NC_015893 | (T)10attaatacatcatagtcatagcaaatc(A)11ttacataaaaaaaattaa(AT)6 | c | 68480 | 68557 | 78 | Design Primer |
| 19 | NC_015893 | (TTTCC)3atttcatttcatttagaaa(G)10 | c | 78931 | 78974 | 44 | Design Primer |
| 20 | NC_015893 | (AGG)5gaaatactagtaactactgaaatttcagtagaaattagtgatgatgtcaaatggaaatatatgatgaggaatattaatgtaaatagtggatcagaa(AAT)5attaatgga(AAT)5 | c | 103710 | 103859 | 150 | Design Primer |
| 21 | NC_015893 | (T)10gactttt(CATTG)3ctagcagccaagttggctactaaatagggggggtagtacctgcgggactaccacccaatatttaatccctctatgtcaccacgc(ACGT)13cgatagaggaaagaaatgggagaagaattaagaggtagttcctcttagttaaagccccatgatat(TGCA)4tgggtatataaacccaactactgttacaggaaagaagaatatttgaaaatttaatgatagtaggataaataaaaaaaaagtttt(TATTC)3 | c | 103975 | 104322 | 348 | Design Primer |
| 22 | NC_015893 | (TGA)6tggtgttattataagaattttactaatt(GTAC)5 | c | 108094 | 108159 | 66 | Design Primer |
| 23 | NC_015893 | (TTA)7gtactaataaaacaaaacagtgctggagcaat(A)10 | c | 111925 | 111987 | 63 | Design Primer |
| 24 | NC_015893 | (CGTA)5cggtacgtacgtaaagtatacacagggatataggatgtactcagggtggaggtagaggttggatttaacataca(TACG)3tacatgttttgtactactac(TAG)13tattgtata(GTATT)4 | c | 112501 | 112694 | 194 | Design Primer |
| 25 | NC_015893 | (A)10ttaaattta(GTAGT)4 | c | 115885 | 115923 | 39 | Design Primer |
| 26 | NC_015893 | (TACT)6tttgtttgttaaagtt(AGG)4 | c | 126700 | 126751 | 52 | Design Primer |