All Repeats of Paramecium caudatum mitochondrion
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
---|---|---|---|---|---|---|---|
1 | NC_014262 | (A)13ttaaataaatttacctaactttt(A)13gattttactcttaactttaaaagatctggtgcaacctttttattt(A)12caaaaataatttatatttttttttaaataaaatgttttttttattttattatttacaaaactta(ATTTT)3 | c | 48 | 232 | 185 | Design Primer |
2 | NC_014262 | (A)12tcattatttaaaaattaaaagtatagagttattaaaaaggta(TAATT)3 | c | 2958 | 3026 | 69 | Design Primer |
3 | NC_014262 | (A)10 | p1 | 3547 | 3556 | 10 | Design Primer |
4 | NC_014262 | (A)10tttct(A)16 | c | 4291 | 4321 | 31 | Design Primer |
5 | NC_014262 | (A)10 | p1 | 4453 | 4462 | 10 | Design Primer |
6 | NC_014262 | (A)11 | p1 | 4629 | 4639 | 11 | Design Primer |
7 | NC_014262 | (A)12 | p1 | 4866 | 4877 | 12 | Design Primer |
8 | NC_014262 | (A)10 | p1 | 5060 | 5069 | 10 | Design Primer |
9 | NC_014262 | (A)14 | p1 | 5589 | 5602 | 14 | Design Primer |
10 | NC_014262 | (A)15 | p1 | 5908 | 5922 | 15 | Design Primer |
11 | NC_014262 | (A)10 | p1 | 6057 | 6066 | 10 | Design Primer |
12 | NC_014262 | (A)10 | p1 | 6203 | 6212 | 10 | Design Primer |
13 | NC_014262 | (T)13 | p1 | 6499 | 6511 | 13 | Design Primer |
14 | NC_014262 | (A)15gaattaaacataaagaaatttaaaaaaaaagagtttaaatcattcattacattaaaatttatagcatcaaaataatcatctcat(A)12tttaaatttaaaacttcaaaactcgaaaaagatcatactgttgaaaaaaaaataaaaaaaaatataaaaaaaatat(A)17tttttcgaaaaaaatattaaaccatttgtagaaaaat(A)10 | c | 7134 | 7384 | 251 | Design Primer |
15 | NC_014262 | (A)11tcattatttaaatttaaataaaataattatt(A)11tggtttaaaaaattctcaagaaccaaaaaaaactatactaattaaacaag(A)10 | c | 7637 | 7749 | 113 | Design Primer |
16 | NC_014262 | (A)13 | p1 | 7901 | 7913 | 13 | Design Primer |
17 | NC_014262 | (A)10 | p1 | 8236 | 8245 | 10 | Design Primer |
18 | NC_014262 | (AAAT)3 | p4 | 8847 | 8858 | 12 | Design Primer |
19 | NC_014262 | (A)13 | p1 | 9235 | 9247 | 13 | Design Primer |
20 | NC_014262 | (A)11 | p1 | 9598 | 9608 | 11 | Design Primer |
21 | NC_014262 | (ATAAAA)3 | p6 | 10466 | 10483 | 18 | Design Primer |
22 | NC_014262 | (A)12ccaaaaaaataaaataaaaaa(AAAG)3 | c | 11287 | 11331 | 45 | Design Primer |
23 | NC_014262 | (A)12 | p1 | 11492 | 11503 | 12 | Design Primer |
24 | NC_014262 | (T)10aaacttagcatactaactaaattgaacaaaaaaattaaaaaagttaatgctaacatttt(A)12 | c | 11968 | 12048 | 81 | Design Primer |
25 | NC_014262 | (A)13gtaattctaaaaaaaataaaaaaattttttttatttttttttaaattactcttaaagaaggttcaagttc(A)11tttttaaaaaacatcttgttttttaataaaaaaacaaaatgtaatgctgtaaaataattaaaataattaaatctttc(A)11taagttttgagtttaactcttt(A)12 | c | 12370 | 12585 | 216 | Design Primer |
26 | NC_014262 | (AAATAA)3 | p6 | 12913 | 12930 | 18 | Design Primer |
27 | NC_014262 | (A)10 | p1 | 13116 | 13125 | 10 | Design Primer |
28 | NC_014262 | (A)10 | p1 | 13327 | 13336 | 10 | Design Primer |
29 | NC_014262 | (A)11 | p1 | 13481 | 13491 | 11 | Design Primer |
30 | NC_014262 | (T)10 | p1 | 13620 | 13629 | 10 | Design Primer |
31 | NC_014262 | (A)11tcataatttt(A)10 | c | 13848 | 13878 | 31 | Design Primer |
32 | NC_014262 | (A)13 | p1 | 14311 | 14323 | 13 | Design Primer |
33 | NC_014262 | (A)12 | p1 | 15770 | 15781 | 12 | Design Primer |
34 | NC_014262 | (T)10 | p1 | 16652 | 16661 | 10 | Design Primer |
35 | NC_014262 | (A)10 | p1 | 16778 | 16787 | 10 | Design Primer |
36 | NC_014262 | (A)11 | p1 | 18142 | 18152 | 11 | Design Primer |
37 | NC_014262 | (A)11 | p1 | 18873 | 18883 | 11 | Design Primer |
38 | NC_014262 | (A)10 | p1 | 19172 | 19181 | 10 | Design Primer |
39 | NC_014262 | (A)13 | p1 | 19317 | 19329 | 13 | Design Primer |
40 | NC_014262 | (A)10 | p1 | 19646 | 19655 | 10 | Design Primer |
41 | NC_014262 | (A)10 | p1 | 19802 | 19811 | 10 | Design Primer |
42 | NC_014262 | (T)16 | p1 | 21090 | 21105 | 16 | Design Primer |
43 | NC_014262 | (A)13 | p1 | 21264 | 21276 | 13 | Design Primer |
44 | NC_014262 | (A)16tcaaaaatttgagaaaaaaataaacaagaaaaaaaagaaccgaattttattgaatttttttttaccctaataggtttgaaatttatataaaaata(T)10aataaaaactttatgtaatttaaattt(A)13cagaaagaacatttaaaaaattagtacttaaagaatacgaaattgctaatgtac(T)11 | c | 21453 | 21678 | 226 | Design Primer |
45 | NC_014262 | (T)11caaaata(T)11aaaaaaataattataaaaatttaa(T)10gaatttttatcaaaactattaaaaaaaagcttagatgctcttttttttgaatc(A)10gaattcttacctctgtagccctttattaagctaaaaatatctaaacctatgtcatt(A)13tttttcttttttaaaaaaattaaataattttcaaaaacattactgttatt(A)12 | c | 21823 | 22079 | 257 | Design Primer |
46 | NC_014262 | (A)10ttaaaatcacaggaattcattctttgaatttc(A)10ttatcaacactaaaaccttctgaatttgaatttaaattactttctatttttc(T)11 | c | 22182 | 22296 | 115 | Design Primer |
47 | NC_014262 | (T)15 | p1 | 22505 | 22519 | 15 | Design Primer |
48 | NC_014262 | (TCA)4t(AATCAG)3aaccagaatcatatgg(T)10 | c | 23224 | 23280 | 57 | Design Primer |
49 | NC_014262 | (T)12 | p1 | 23868 | 23879 | 12 | Design Primer |
50 | NC_014262 | (A)10 | p1 | 24069 | 24078 | 10 | Design Primer |
51 | NC_014262 | (T)10 | p1 | 24257 | 24266 | 10 | Design Primer |
52 | NC_014262 | (A)11 | p1 | 24487 | 24497 | 11 | Design Primer |
53 | NC_014262 | (T)12 | p1 | 25076 | 25087 | 12 | Design Primer |
54 | NC_014262 | (A)11gtttaataatttaaca(T)11atctttattttatctaaaaaaatgttaaaag(T)11 | c | 25362 | 25441 | 80 | Design Primer |
55 | NC_014262 | (A)10tagcctaaagaacctcaataagagctaaaattattaaacatatgcatttt(A)13ctttttaaatataaattta(T)10 | c | 25627 | 25728 | 102 | Design Primer |
56 | NC_014262 | (A)15ttttaatattttaaagattaaaaaaataaatttaaaaatattaaaaagaaagaatct(A)11tgaaaataaaataaaaaaataaataaaattaaacataaaaataaaattaaaattaatttttaaaaaaaaattaaaagaatttaaaattaaa(T)11atttacaaaagatttaacaacatttaaataaaaaaataaagtaaacatattaaaaattaa(AAAAAT)3aaaattagtttt(A)17ttaaaaattttaaaaaaaaaccaacaagaggaggtattcctgcaaaattt(A)10caagaataaagaatttaaaaaagtatacattattaaaatagtaaacttgagagacactttttaaatatttagttttaacgttaaat(A)16 | c | 26796 | 27249 | 454 | Design Primer |
57 | NC_014262 | (A)12taatattttgtttaaaaaaaaatcaaaatcaaaat(A)12 | c | 28684 | 28742 | 59 | Design Primer |
58 | NC_014262 | (A)10gtattaataatttaattttaaaacaaat(A)10 | c | 29085 | 29132 | 48 | Design Primer |
59 | NC_014262 | (T)10 | p1 | 29367 | 29376 | 10 | Design Primer |
60 | NC_014262 | (A)10 | p1 | 29749 | 29758 | 10 | Design Primer |
61 | NC_014262 | (A)10tatcaaaaaaatctgagtaattaaacgaaatcatttgattctt(A)10 | c | 30021 | 30083 | 63 | Design Primer |
62 | NC_014262 | (A)18 | p1 | 30396 | 30413 | 18 | Design Primer |
63 | NC_014262 | (T)17 | p1 | 31243 | 31259 | 17 | Design Primer |
64 | NC_014262 | (T)10cttttggttcttcaactacttcagtaaactcatcatcatagtaaaacgcttctcttcttcttttttcttctag(T)11cttctag(T)11 | c | 31902 | 32013 | 112 | Design Primer |
65 | NC_014262 | (A)12tttttaaattttttattttttgttgtaa(T)13 | c | 33063 | 33115 | 53 | Design Primer |
66 | NC_014262 | (T)10 | p1 | 34162 | 34171 | 10 | Design Primer |
67 | NC_014262 | (A)10 | p1 | 35426 | 35435 | 10 | Design Primer |
68 | NC_014262 | (T)10a(T)11 | c | 35858 | 35879 | 22 | Design Primer |
69 | NC_014262 | (A)12 | p1 | 36489 | 36500 | 12 | Design Primer |
70 | NC_014262 | (A)13 | p1 | 37106 | 37118 | 13 | Design Primer |
71 | NC_014262 | (T)10agcttcaagatcataaaagcttacgtaactta(T)10 | c | 37251 | 37302 | 52 | Design Primer |
72 | NC_014262 | (A)10 | p1 | 37633 | 37642 | 10 | Design Primer |
73 | NC_014262 | (A)12 | p1 | 37963 | 37974 | 12 | Design Primer |
74 | NC_014262 | (A)11tgttgaataaaaaaatgttataaaaagaggtagccctttataaatttctatttt(A)12tggaggtaaaccaagtttaaatacacaagct(A)10 | c | 38076 | 38193 | 118 | Design Primer |
75 | NC_014262 | (A)12ttctttagatgcagaaattaagtaaaagtttgttatagctatcaactctaaaccaaaaaaaaatgtaaaccaattatttgaaaaaaaaataaaagttg(A)10taaaaaaataaaagatattaaaaaatctaaactagtatt(A)10gttttaataaaaaaagttttaaataaaaaaaat(A)10 | c | 38432 | 38643 | 212 | Design Primer |
76 | NC_014262 | (A)12gtt(A)11 | c | 38748 | 38773 | 26 | Design Primer |
77 | NC_014262 | (A)10 | p1 | 39073 | 39082 | 10 | Design Primer |
78 | NC_014262 | (A)10gacaatactagcattaaaaataaaaaagatttaatagctattcttcttttatttttaaaacctgaatcgt(A)11 | c | 39456 | 39546 | 91 | Design Primer |
79 | NC_014262 | (A)10gaaaagaaagaaaaggatttacaattaaatataa(T)10aataaaaaaaataaaaataatgcataaaaataat(A)11 | c | 40142 | 40240 | 99 | Design Primer |
80 | NC_014262 | (A)15tcagaacatagtgtataaatac(T)10(A)12tttgtaaaagaaaagaaaaaaaagattaagaataaacattt(A)11 | c | 40449 | 40559 | 111 | Design Primer |
81 | NC_014262 | (T)12gaatactttattatgcaaaaaaatttaac(AAAT)4aaagaataaaagataaaatttaaattttttatattatttttttttgaaacaaaagaatgaatagatgtaaaataaccaaaacgtaatcc(AAAATA)3aaacaaaataaaac(AAAAT)3 | c | 40667 | 40859 | 193 | Design Primer |
82 | NC_014262 | (AATAAA)4aaataaggaaaatttatagcaacaggatgtataaaaagcaagccatcaagtaaactgttttcatattttgttttaaaaaatgtttgataaaaaaaatt(A)10gtat(A)13gtttacattaaaattaaagaaatttaaaaaaattaaaaaaaataatat(A)13ctcatctttaaactaaaaaaattaaatataaaat(A)11ttttcat(A)10 | c | 41075 | 41346 | 272 | Design Primer |
83 | NC_014262 | (A)10 | p1 | 41686 | 41695 | 10 | Design Primer |
84 | NC_014262 | (A)11 | p1 | 42043 | 42053 | 11 | Design Primer |
85 | NC_014262 | (T)11 | p1 | 42477 | 42487 | 11 | Design Primer |
86 | NC_014262 | (A)10tattaaaagcatttgttaaaaatataaaaaaaaga(AAG)5 | c | 42734 | 42793 | 60 | Design Primer |
87 | NC_014262 | (A)15 | p1 | 43125 | 43139 | 15 | Design Primer |
88 | NC_014262 | (A)10 | p1 | 43373 | 43382 | 10 | Design Primer |