All Repeats of Oryza rufipogon mitochondrion
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
|---|---|---|---|---|---|---|---|
| 1 | NC_013816 | (CATC)3 | p4 | 2881 | 2892 | 12 | Design Primer |
| 2 | NC_013816 | (TACT)3 | p4 | 8747 | 8758 | 12 | Design Primer |
| 3 | NC_013816 | (ACGA)3 | p4 | 13554 | 13565 | 12 | Design Primer |
| 4 | NC_013816 | (A)10 | p1 | 17482 | 17491 | 10 | Design Primer |
| 5 | NC_013816 | (AGA)4 | p3 | 26557 | 26568 | 12 | Design Primer |
| 6 | NC_013816 | (GCCG)3 | p4 | 27541 | 27552 | 12 | Design Primer |
| 7 | NC_013816 | (CAGT)3 | p4 | 28658 | 28669 | 12 | Design Primer |
| 8 | NC_013816 | (GAA)4 | p3 | 30576 | 30587 | 12 | Design Primer |
| 9 | NC_013816 | (CATT)3 | p4 | 56460 | 56471 | 12 | Design Primer |
| 10 | NC_013816 | (AAAG)3 | p4 | 60505 | 60516 | 12 | Design Primer |
| 11 | NC_013816 | (CAATT)3 | p5 | 62397 | 62411 | 15 | Design Primer |
| 12 | NC_013816 | (AAATAA)3 | p6 | 65403 | 65420 | 18 | Design Primer |
| 13 | NC_013816 | (T)11 | p1 | 68697 | 68707 | 11 | Design Primer |
| 14 | NC_013816 | (AGT)4 | p3 | 71081 | 71092 | 12 | Design Primer |
| 15 | NC_013816 | (CTTG)3 | p4 | 71942 | 71953 | 12 | Design Primer |
| 16 | NC_013816 | (AAAG)3 | p4 | 76065 | 76076 | 12 | Design Primer |
| 17 | NC_013816 | (AGAA)3aatgttaaacatggttttaaaccattttaacggtaaatcgcacaggtt(CAA)4 | c | 76541 | 76612 | 72 | Design Primer |
| 18 | NC_013816 | (TTTG)3 | p4 | 82810 | 82821 | 12 | Design Primer |
| 19 | NC_013816 | (AAAGG)3 | p5 | 96499 | 96513 | 15 | Design Primer |
| 20 | NC_013816 | (TAG)4 | p3 | 97262 | 97273 | 12 | Design Primer |
| 21 | NC_013816 | (CTC)4 | p3 | 103801 | 103812 | 12 | Design Primer |
| 22 | NC_013816 | (GACT)3 | p4 | 120148 | 120159 | 12 | Design Primer |
| 23 | NC_013816 | (TTA)4 | p3 | 121334 | 121345 | 12 | Design Primer |
| 24 | NC_013816 | (TTTGA)3(A)10* | c* | 123671 | 123694 | 24 | Design Primer |
| 25 | NC_013816 | (TTCTA)3 | p5 | 129763 | 129777 | 15 | Design Primer |
| 26 | NC_013816 | (AG)6actgccatcgcca(TC)6 | c | 134685 | 134721 | 37 | Design Primer |
| 27 | NC_013816 | (T)10 | p1 | 136925 | 136934 | 10 | Design Primer |
| 28 | NC_013816 | (T)10 | p1 | 140068 | 140077 | 10 | Design Primer |
| 29 | NC_013816 | (GACT)3 | p4 | 140801 | 140812 | 12 | Design Primer |
| 30 | NC_013816 | (TAATT)3 | p5 | 144699 | 144713 | 15 | Design Primer |
| 31 | NC_013816 | (GAAA)3 | p4 | 148806 | 148817 | 12 | Design Primer |
| 32 | NC_013816 | (ACA)4 | p3 | 150230 | 150241 | 12 | Design Primer |
| 33 | NC_013816 | (GTAG)4 | p4 | 151505 | 151520 | 16 | Design Primer |
| 34 | NC_013816 | (AATA)3 | p4 | 155727 | 155738 | 12 | Design Primer |
| 35 | NC_013816 | (GCTT)3 | p4 | 158831 | 158842 | 12 | Design Primer |
| 36 | NC_013816 | (GTAG)3 | p4 | 162528 | 162539 | 12 | Design Primer |
| 37 | NC_013816 | (ATA)4 | p3 | 165245 | 165256 | 12 | Design Primer |
| 38 | NC_013816 | (AAT)4 | p3 | 179879 | 179890 | 12 | Design Primer |
| 39 | NC_013816 | (CATC)3 | p4 | 191642 | 191653 | 12 | Design Primer |
| 40 | NC_013816 | (TACT)3 | p4 | 197508 | 197519 | 12 | Design Primer |
| 41 | NC_013816 | (ACGA)3 | p4 | 202315 | 202326 | 12 | Design Primer |
| 42 | NC_013816 | (A)10 | p1 | 206243 | 206252 | 10 | Design Primer |
| 43 | NC_013816 | (AGA)4 | p3 | 215318 | 215329 | 12 | Design Primer |
| 44 | NC_013816 | (GCCG)3 | p4 | 216302 | 216313 | 12 | Design Primer |
| 45 | NC_013816 | (CAGT)3 | p4 | 217419 | 217430 | 12 | Design Primer |
| 46 | NC_013816 | (GAA)4 | p3 | 219337 | 219348 | 12 | Design Primer |
| 47 | NC_013816 | (CATT)3 | p4 | 245220 | 245231 | 12 | Design Primer |
| 48 | NC_013816 | (AAAG)3 | p4 | 249265 | 249276 | 12 | Design Primer |
| 49 | NC_013816 | (CAATT)3 | p5 | 251157 | 251171 | 15 | Design Primer |
| 50 | NC_013816 | (AAATAA)3 | p6 | 254162 | 254179 | 18 | Design Primer |
| 51 | NC_013816 | (T)11 | p1 | 257456 | 257466 | 11 | Design Primer |
| 52 | NC_013816 | (AGT)4 | p3 | 259840 | 259851 | 12 | Design Primer |
| 53 | NC_013816 | (CTTG)3 | p4 | 260701 | 260712 | 12 | Design Primer |
| 54 | NC_013816 | (GAAA)3 | p4 | 266451 | 266462 | 12 | Design Primer |
| 55 | NC_013816 | (CTTC)3 | p4 | 266999 | 267010 | 12 | Design Primer |
| 56 | NC_013816 | (AT)6 | p2 | 268578 | 268589 | 12 | Design Primer |
| 57 | NC_013816 | (G)11 | p1 | 271467 | 271477 | 11 | Design Primer |
| 58 | NC_013816 | (T)10 | p1 | 285373 | 285382 | 10 | Design Primer |
| 59 | NC_013816 | (TCGC)3 | p4 | 286461 | 286472 | 12 | Design Primer |
| 60 | NC_013816 | (CTT)4 | p3 | 297516 | 297527 | 12 | Design Primer |
| 61 | NC_013816 | (TCTT)3 | p4 | 315347 | 315358 | 12 | Design Primer |
| 62 | NC_013816 | (C)10 | p1 | 321456 | 321465 | 10 | Design Primer |
| 63 | NC_013816 | (GCCCG)3 | p5 | 321734 | 321748 | 15 | Design Primer |
| 64 | NC_013816 | (TAAGA)3 | p5 | 327501 | 327515 | 15 | Design Primer |
| 65 | NC_013816 | (TTCC)3 | p4 | 331706 | 331717 | 12 | Design Primer |
| 66 | NC_013816 | (AAT)4 | p3 | 339066 | 339077 | 12 | Design Primer |
| 67 | NC_013816 | (ACT)4gtattcctctccactctcctcgtcagttcgagcccggctcg(CAA)4 | c | 339974 | 340038 | 65 | Design Primer |
| 68 | NC_013816 | (GGGC)3 | p4 | 351007 | 351018 | 12 | Design Primer |
| 69 | NC_013816 | (CTT)4 | p3 | 366039 | 366050 | 12 | Design Primer |
| 70 | NC_013816 | (TCTT)3 | p4 | 383869 | 383880 | 12 | Design Primer |
| 71 | NC_013816 | (C)10 | p1 | 389978 | 389987 | 10 | Design Primer |
| 72 | NC_013816 | (GCCCG)3 | p5 | 390256 | 390270 | 15 | Design Primer |
| 73 | NC_013816 | (TAAGA)3 | p5 | 396023 | 396037 | 15 | Design Primer |
| 74 | NC_013816 | (TTCC)3 | p4 | 400228 | 400239 | 12 | Design Primer |
| 75 | NC_013816 | (AAT)4 | p3 | 407588 | 407599 | 12 | Design Primer |
| 76 | NC_013816 | (ACT)4gtattcctctccactctcctcgtcagttcgagcccggctcg(CAA)4 | c | 408496 | 408560 | 65 | Design Primer |
| 77 | NC_013816 | (GAGC)3 | p4 | 419776 | 419787 | 12 | Design Primer |
| 78 | NC_013816 | (A)10 | p1 | 420868 | 420877 | 10 | Design Primer |
| 79 | NC_013816 | (C)11 | p1 | 434773 | 434783 | 11 | Design Primer |
| 80 | NC_013816 | (AT)6 | p2 | 437661 | 437672 | 12 | Design Primer |
| 81 | NC_013816 | (GAAG)3 | p4 | 439240 | 439251 | 12 | Design Primer |
| 82 | NC_013816 | (TTTC)3 | p4 | 439788 | 439799 | 12 | Design Primer |
| 83 | NC_013816 | (CAAG)3 | p4 | 445538 | 445549 | 12 | Design Primer |
| 84 | NC_013816 | (ACT)4 | p3 | 446399 | 446410 | 12 | Design Primer |
| 85 | NC_013816 | (A)12 | p1 | 470465 | 470476 | 12 | Design Primer |
| 86 | NC_013816 | (AAGA)3 | p4 | 474084 | 474095 | 12 | Design Primer |
| 87 | NC_013816 | (AATG)3 | p4 | 476454 | 476465 | 12 | Design Primer |
| 88 | NC_013816 | (CTTT)3acct(TTCC)3 | c | 479098 | 479125 | 28 | Design Primer |
| 89 | NC_013816 | (TGGAT)3 | p5 | 479897 | 479911 | 15 | Design Primer |
| 90 | NC_013816 | (TAAG)3 | p4 | 500038 | 500049 | 12 | Design Primer |
| 91 | NC_013816 | (AG)6actgccatcgcca(TC)6 | c | 504967 | 505003 | 37 | Design Primer |
| 92 | NC_013816 | (T)10 | p1 | 507207 | 507216 | 10 | Design Primer |
| 93 | NC_013816 | (T)10 | p1 | 510350 | 510359 | 10 | Design Primer |
| 94 | NC_013816 | (GACT)3 | p4 | 511083 | 511094 | 12 | Design Primer |
| 95 | NC_013816 | (TAATT)3 | p5 | 514981 | 514995 | 15 | Design Primer |
| 96 | NC_013816 | (GAAA)3 | p4 | 519088 | 519099 | 12 | Design Primer |
| 97 | NC_013816 | (ACA)4 | p3 | 520512 | 520523 | 12 | Design Primer |
| 98 | NC_013816 | (GTAG)4 | p4 | 521787 | 521802 | 16 | Design Primer |
| 99 | NC_013816 | (AATA)3 | p4 | 526009 | 526020 | 12 | Design Primer |
| 100 | NC_013816 | (GCTT)3 | p4 | 529113 | 529124 | 12 | Design Primer |
| 101 | NC_013816 | (GTAG)3 | p4 | 532810 | 532821 | 12 | Design Primer |
| 102 | NC_013816 | (ATA)4 | p3 | 535527 | 535538 | 12 | Design Primer |
| 103 | NC_013816 | (AAT)4 | p3 | 550161 | 550172 | 12 | Design Primer |