All Repeats of Oryza sativa Japonica Group mitochondrion
Click on Table Heading To Sort Results Accordingly
| S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
|---|---|---|---|---|---|---|---|
| 1 | NC_011033 | (T)10 | p1 | 11679 | 11688 | 10 | Design Primer |
| 2 | NC_011033 | (T)10 | p1 | 14822 | 14831 | 10 | Design Primer |
| 3 | NC_011033 | (GACT)3 | p4 | 15555 | 15566 | 12 | Design Primer |
| 4 | NC_011033 | (TAATT)3 | p5 | 19453 | 19467 | 15 | Design Primer |
| 5 | NC_011033 | (GAAA)3 | p4 | 23559 | 23570 | 12 | Design Primer |
| 6 | NC_011033 | (ACA)4 | p3 | 24980 | 24991 | 12 | Design Primer |
| 7 | NC_011033 | (GTAG)4 | p4 | 26255 | 26270 | 16 | Design Primer |
| 8 | NC_011033 | (AATA)3 | p4 | 30475 | 30486 | 12 | Design Primer |
| 9 | NC_011033 | (GCTT)3 | p4 | 33579 | 33590 | 12 | Design Primer |
| 10 | NC_011033 | (T)10 | p1 | 34516 | 34525 | 10 | Design Primer |
| 11 | NC_011033 | (GTAG)3 | p4 | 37274 | 37285 | 12 | Design Primer |
| 12 | NC_011033 | (ATA)4 | p3 | 39991 | 40002 | 12 | Design Primer |
| 13 | NC_011033 | (AAT)4 | p3 | 53508 | 53519 | 12 | Design Primer |
| 14 | NC_011033 | (CATC)3 | p4 | 65272 | 65283 | 12 | Design Primer |
| 15 | NC_011033 | (TACT)3 | p4 | 71137 | 71148 | 12 | Design Primer |
| 16 | NC_011033 | (ACGA)3 | p4 | 75940 | 75951 | 12 | Design Primer |
| 17 | NC_011033 | (A)10 | p1 | 79869 | 79878 | 10 | Design Primer |
| 18 | NC_011033 | (A)10 | p1 | 84070 | 84079 | 10 | Design Primer |
| 19 | NC_011033 | (AGA)4 | p3 | 88945 | 88956 | 12 | Design Primer |
| 20 | NC_011033 | (GCCG)3 | p4 | 89929 | 89940 | 12 | Design Primer |
| 21 | NC_011033 | (CAGT)3 | p4 | 91046 | 91057 | 12 | Design Primer |
| 22 | NC_011033 | (GAA)4 | p3 | 92964 | 92975 | 12 | Design Primer |
| 23 | NC_011033 | (T)10 | p1 | 106206 | 106215 | 10 | Design Primer |
| 24 | NC_011033 | (T)10 | p1 | 109349 | 109358 | 10 | Design Primer |
| 25 | NC_011033 | (GACT)3 | p4 | 110082 | 110093 | 12 | Design Primer |
| 26 | NC_011033 | (TAATT)3 | p5 | 113980 | 113994 | 15 | Design Primer |
| 27 | NC_011033 | (GAAA)3 | p4 | 118086 | 118097 | 12 | Design Primer |
| 28 | NC_011033 | (ACA)4 | p3 | 119507 | 119518 | 12 | Design Primer |
| 29 | NC_011033 | (GTAG)4 | p4 | 120782 | 120797 | 16 | Design Primer |
| 30 | NC_011033 | (AATA)3 | p4 | 125002 | 125013 | 12 | Design Primer |
| 31 | NC_011033 | (GCTT)3 | p4 | 128106 | 128117 | 12 | Design Primer |
| 32 | NC_011033 | (T)10 | p1 | 129043 | 129052 | 10 | Design Primer |
| 33 | NC_011033 | (GTAG)3 | p4 | 131801 | 131812 | 12 | Design Primer |
| 34 | NC_011033 | (ATA)4 | p3 | 134518 | 134529 | 12 | Design Primer |
| 35 | NC_011033 | (CT)6 | p2 | 149957 | 149968 | 12 | Design Primer |
| 36 | NC_011033 | (GAGC)3 | p4 | 155486 | 155497 | 12 | Design Primer |
| 37 | NC_011033 | (ATAG)3 | p4 | 158151 | 158162 | 12 | Design Primer |
| 38 | NC_011033 | (CATT)3 | p4 | 172887 | 172898 | 12 | Design Primer |
| 39 | NC_011033 | (AAAG)3 | p4 | 176932 | 176943 | 12 | Design Primer |
| 40 | NC_011033 | (CAATT)3 | p5 | 178825 | 178839 | 15 | Design Primer |
| 41 | NC_011033 | (AAATAA)3 | p6 | 181831 | 181848 | 18 | Design Primer |
| 42 | NC_011033 | (T)12 | p1 | 185090 | 185101 | 12 | Design Primer |
| 43 | NC_011033 | (AGT)4 | p3 | 187475 | 187486 | 12 | Design Primer |
| 44 | NC_011033 | (CTTG)3 | p4 | 188655 | 188666 | 12 | Design Primer |
| 45 | NC_011033 | (GAAA)3 | p4 | 194405 | 194416 | 12 | Design Primer |
| 46 | NC_011033 | (CTTC)3 | p4 | 194953 | 194964 | 12 | Design Primer |
| 47 | NC_011033 | (AT)6 | p2 | 196532 | 196543 | 12 | Design Primer |
| 48 | NC_011033 | (G)12 | p1 | 199421 | 199432 | 12 | Design Primer |
| 49 | NC_011033 | (T)10 | p1 | 213447 | 213456 | 10 | Design Primer |
| 50 | NC_011033 | (TCGC)3 | p4 | 214535 | 214546 | 12 | Design Primer |
| 51 | NC_011033 | (AG)6atggcgatggcag(TC)6 | c | 222653 | 222689 | 37 | Design Primer |
| 52 | NC_011033 | (AAAG)3 | p4 | 227226 | 227237 | 12 | Design Primer |
| 53 | NC_011033 | (AGAA)3aatgttaaacatggttttaaaccattttaacggtaaatcgcacaggtt(CAA)4 | c | 227702 | 227773 | 72 | Design Primer |
| 54 | NC_011033 | (TTTG)3 | p4 | 233972 | 233983 | 12 | Design Primer |
| 55 | NC_011033 | (T)10 | p1 | 237000 | 237009 | 10 | Design Primer |
| 56 | NC_011033 | (AAAGG)3 | p5 | 247650 | 247664 | 15 | Design Primer |
| 57 | NC_011033 | (TAG)4 | p3 | 248413 | 248424 | 12 | Design Primer |
| 58 | NC_011033 | (A)10 | p1 | 251384 | 251393 | 10 | Design Primer |
| 59 | NC_011033 | (CTC)4 | p3 | 254953 | 254964 | 12 | Design Primer |
| 60 | NC_011033 | (GACT)3 | p4 | 271301 | 271312 | 12 | Design Primer |
| 61 | NC_011033 | (TTA)4 | p3 | 272487 | 272498 | 12 | Design Primer |
| 62 | NC_011033 | (TCGC)3 | p4 | 273661 | 273672 | 12 | Design Primer |
| 63 | NC_011033 | (AG)6atggcgatggcag(TC)6 | c | 281779 | 281815 | 37 | Design Primer |
| 64 | NC_011033 | (ACTT)3 | p4 | 286734 | 286745 | 12 | Design Primer |
| 65 | NC_011033 | (ATT)4 | p3 | 289439 | 289450 | 12 | Design Primer |
| 66 | NC_011033 | (T)10 | p1 | 310081 | 310090 | 10 | Design Primer |
| 67 | NC_011033 | (ATCCA)3 | p5 | 312023 | 312037 | 15 | Design Primer |
| 68 | NC_011033 | (GGAA)3aggt(AAAG)3 | c | 312809 | 312836 | 28 | Design Primer |
| 69 | NC_011033 | (TCAT)3 | p4 | 315468 | 315479 | 12 | Design Primer |
| 70 | NC_011033 | (TTCT)3 | p4 | 317837 | 317848 | 12 | Design Primer |
| 71 | NC_011033 | (A)10 | p1 | 320800 | 320809 | 10 | Design Primer |
| 72 | NC_011033 | (T)13 | p1 | 321457 | 321469 | 13 | Design Primer |
| 73 | NC_011033 | (TTG)4cgagccgggctcgaactgacgaggagagtggagaggaatac(AGT)4 | c | 347288 | 347352 | 65 | Design Primer |
| 74 | NC_011033 | (TAT)4 | p3 | 348248 | 348259 | 12 | Design Primer |
| 75 | NC_011033 | (GGAA)3 | p4 | 355601 | 355612 | 12 | Design Primer |
| 76 | NC_011033 | (TCTTA)3 | p5 | 359804 | 359818 | 15 | Design Primer |
| 77 | NC_011033 | (CGGGC)3 | p5 | 365571 | 365585 | 15 | Design Primer |
| 78 | NC_011033 | (G)11 | p1 | 365854 | 365864 | 11 | Design Primer |
| 79 | NC_011033 | (AAGA)3 | p4 | 371962 | 371973 | 12 | Design Primer |
| 80 | NC_011033 | (AAG)4 | p3 | 389795 | 389806 | 12 | Design Primer |
| 81 | NC_011033 | (GCCC)3 | p4 | 404830 | 404841 | 12 | Design Primer |
| 82 | NC_011033 | (AG)6atggcgatggcag(TC)6 | c | 412700 | 412736 | 37 | Design Primer |
| 83 | NC_011033 | (TAGAA)3 | p5 | 417645 | 417659 | 15 | Design Primer |
| 84 | NC_011033 | (TTG)4cgagccgggctcgaactgacgaggagagtggagaggaatac(AGT)4 | c | 428375 | 428439 | 65 | Design Primer |
| 85 | NC_011033 | (TAT)4 | p3 | 429335 | 429346 | 12 | Design Primer |
| 86 | NC_011033 | (GGAA)3 | p4 | 436688 | 436699 | 12 | Design Primer |
| 87 | NC_011033 | (TCTTA)3 | p5 | 440891 | 440905 | 15 | Design Primer |
| 88 | NC_011033 | (CGGGC)3 | p5 | 446658 | 446672 | 15 | Design Primer |
| 89 | NC_011033 | (G)11 | p1 | 446941 | 446951 | 11 | Design Primer |
| 90 | NC_011033 | (AAGA)3 | p4 | 453049 | 453060 | 12 | Design Primer |
| 91 | NC_011033 | (CT)6 | p2 | 473058 | 473069 | 12 | Design Primer |
| 92 | NC_011033 | (GAGC)3 | p4 | 478587 | 478598 | 12 | Design Primer |
| 93 | NC_011033 | (ATAG)3 | p4 | 481252 | 481263 | 12 | Design Primer |