All Repeats of Chlorokybus atmophyticus mitochondrion
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
---|---|---|---|---|---|---|---|
1 | NC_009630 | (CAACC)9 | p5 | 582 | 626 | 45 | Design Primer |
2 | NC_009630 | (AAGCAG)6(AGC)5*ccagtgcagagttttaatcggg(TGCA)4 | c* | 4334 | 4417 | 84 | Design Primer |
3 | NC_009630 | (CTTT)3 | p4 | 4838 | 4849 | 12 | Design Primer |
4 | NC_009630 | (CATTC)5cattttattgcagcggtctaatcaagtataataaagtagagtgcatcctggggtttactgcc(GCAT)3 | c | 5434 | 5532 | 99 | Design Primer |
5 | NC_009630 | (CAAAG)16 | p5 | 7072 | 7151 | 80 | Design Primer |
6 | NC_009630 | (T)12 | p1 | 8441 | 8452 | 12 | Design Primer |
7 | NC_009630 | (A)11 | p1 | 8723 | 8733 | 11 | Design Primer |
8 | NC_009630 | (TGCAA)3 | p5 | 8982 | 8996 | 15 | Design Primer |
9 | NC_009630 | (TAAGTT)7 | p6 | 10314 | 10355 | 42 | Design Primer |
10 | NC_009630 | (TGCA)5 | p4 | 12863 | 12882 | 20 | Design Primer |
11 | NC_009630 | (CAGTG)4 | p5 | 14264 | 14283 | 20 | Design Primer |
12 | NC_009630 | (GCAT)3 | p4 | 14536 | 14547 | 12 | Design Primer |
13 | NC_009630 | (C)12 | p1 | 14680 | 14691 | 12 | Design Primer |
14 | NC_009630 | (TGCA)3 | p4 | 15158 | 15169 | 12 | Design Primer |
15 | NC_009630 | (TGCAT)4 | p5 | 15391 | 15410 | 20 | Design Primer |
16 | NC_009630 | (TGCAT)5(TGTAT)5 | c | 15604 | 15653 | 50 | Design Primer |
17 | NC_009630 | (ATTCAA)4 | p6 | 17715 | 17738 | 24 | Design Primer |
18 | NC_009630 | (A)10 | p1 | 19689 | 19698 | 10 | Design Primer |
19 | NC_009630 | (TGCA)3 | p4 | 20182 | 20193 | 12 | Design Primer |
20 | NC_009630 | (CATG)4 | p4 | 25281 | 25296 | 16 | Design Primer |
21 | NC_009630 | (GCA)13(GCAGTA)3* | c* | 25873 | 25926 | 54 | Design Primer |
22 | NC_009630 | (AAAG)3 | p4 | 26467 | 26478 | 12 | Design Primer |
23 | NC_009630 | (AATAA)3 | p5 | 28612 | 28626 | 15 | Design Primer |
24 | NC_009630 | (T)10 | p1 | 29312 | 29321 | 10 | Design Primer |
25 | NC_009630 | (TGCAT)3 | p5 | 30393 | 30407 | 15 | Design Primer |
26 | NC_009630 | (CACTG)3ggcttccaaaaagggctgca(CTGGG)4 | c | 31042 | 31096 | 55 | Design Primer |
27 | NC_009630 | (A)11 | p1 | 31960 | 31970 | 11 | Design Primer |
28 | NC_009630 | (TAAAG)3tagagcgtagaaaagggaaaccttctttaatattacattt(TATTC)3 | c | 32551 | 32620 | 70 | Design Primer |
29 | NC_009630 | (TGCA)7tggatgaccaagctgcactgcattgtatgcaacagcacagctaaacaaattatcttcagaggaaactcc(CAGTG)3 | c | 32851 | 32962 | 112 | Design Primer |
30 | NC_009630 | (CATTG)3(CATTC)6 | c | 38729 | 38773 | 45 | Design Primer |
31 | NC_009630 | (AATGG)8(AATGC)5 | c | 42739 | 42803 | 65 | Design Primer |
32 | NC_009630 | (TGCA)6 | p4 | 45819 | 45842 | 24 | Design Primer |
33 | NC_009630 | (GATTA)3 | p5 | 47582 | 47596 | 15 | Design Primer |
34 | NC_009630 | (TAAT)3 | p4 | 50291 | 50302 | 12 | Design Primer |
35 | NC_009630 | (GCAT)11 | p4 | 56120 | 56163 | 44 | Design Primer |
36 | NC_009630 | (TTAGT)3 | p5 | 56734 | 56748 | 15 | Design Primer |
37 | NC_009630 | (TGCA)4 | p4 | 58318 | 58333 | 16 | Design Primer |
38 | NC_009630 | (AATAG)5aataaaatagaaccgttaaacgagcctgccaccaatgcgatctaacggttctggtttacgcagtttcatgtcaaattgcac(CACTG)3cacagcactggg(CTGCA)3cagcactgca(CTGGG)3(CTGCA)13 | c | 60552 | 60789 | 238 | Design Primer |
39 | NC_009630 | (AGTAA)7 | p5 | 60915 | 60949 | 35 | Design Primer |
40 | NC_009630 | (ATGCA)3 | p5 | 61355 | 61369 | 15 | Design Primer |
41 | NC_009630 | (ATTT)3 | p4 | 61736 | 61747 | 12 | Design Primer |
42 | NC_009630 | (CAGCG)3 | p5 | 62291 | 62305 | 15 | Design Primer |
43 | NC_009630 | (ACCCAA)11 | p6 | 62922 | 62987 | 66 | Design Primer |
44 | NC_009630 | (ACTAA)3 | p5 | 65697 | 65711 | 15 | Design Primer |
45 | NC_009630 | (C)11 | p1 | 66295 | 66305 | 11 | Design Primer |
46 | NC_009630 | (TGCAG)10cc(CAGTG)6 | c | 67966 | 68047 | 82 | Design Primer |
47 | NC_009630 | (CTAAAA)3 | p6 | 68173 | 68190 | 18 | Design Primer |
48 | NC_009630 | (A)10 | p1 | 68358 | 68367 | 10 | Design Primer |
49 | NC_009630 | (A)10 | p1 | 68590 | 68599 | 10 | Design Primer |
50 | NC_009630 | (TCGGTC)3 | p6 | 68901 | 68918 | 18 | Design Primer |
51 | NC_009630 | (TGCA)4 | p4 | 70324 | 70339 | 16 | Design Primer |
52 | NC_009630 | (CATTG)3 | p5 | 72149 | 72163 | 15 | Design Primer |
53 | NC_009630 | (CAGTG)3 | p5 | 72271 | 72285 | 15 | Design Primer |
54 | NC_009630 | (ATGC)7 | p4 | 74918 | 74945 | 28 | Design Primer |
55 | NC_009630 | (TGCA)3 | p4 | 75878 | 75889 | 12 | Design Primer |
56 | NC_009630 | (TGCAG)35 | p5 | 77073 | 77247 | 175 | Design Primer |
57 | NC_009630 | (TGCA)3 | p4 | 79990 | 80001 | 12 | Design Primer |
58 | NC_009630 | (CTGCA)3 | p5 | 80662 | 80676 | 15 | Design Primer |
59 | NC_009630 | (GCACT)27 | p5 | 83968 | 84102 | 135 | Design Primer |
60 | NC_009630 | (CTAGG)3 | p5 | 84213 | 84227 | 15 | Design Primer |
61 | NC_009630 | (T)12 | p1 | 85017 | 85028 | 12 | Design Primer |
62 | NC_009630 | (CATTG)14 | p5 | 85401 | 85470 | 70 | Design Primer |
63 | NC_009630 | (AAGTA)4aaccgcaactctacgaaactaattaaagagtctgcgtcgccaaagatacaatgaccgtgccatcagcccagtttaa(TTTAG)7 | c | 85592 | 85722 | 131 | Design Primer |
64 | NC_009630 | (AATGC)3 | p5 | 88128 | 88142 | 15 | Design Primer |
65 | NC_009630 | (GCATT)3 | p5 | 88378 | 88392 | 15 | Design Primer |
66 | NC_009630 | (TGCA)5 | p4 | 88532 | 88551 | 20 | Design Primer |
67 | NC_009630 | (TAGGC)4 | p5 | 90208 | 90227 | 20 | Design Primer |
68 | NC_009630 | (GCAAT)3(GGAAT)9(GCAAT)4 | c | 91186 | 91265 | 80 | Design Primer |
69 | NC_009630 | (TGCAT)4(TCCAT)7tgcattgcattc(CATTG)3 | c | 93521 | 93602 | 82 | Design Primer |
70 | NC_009630 | (T)10 | p1 | 96708 | 96717 | 10 | Design Primer |
71 | NC_009630 | (ACTAA)5 | p5 | 98005 | 98029 | 25 | Design Primer |
72 | NC_009630 | (ACTAA)3 | p5 | 98975 | 98989 | 15 | Design Primer |
73 | NC_009630 | (CTGCA)8 | p5 | 103460 | 103499 | 40 | Design Primer |
74 | NC_009630 | (TTAGAA)7 | p6 | 105134 | 105175 | 42 | Design Primer |
75 | NC_009630 | (C)10 | p1 | 106406 | 106415 | 10 | Design Primer |
76 | NC_009630 | (TGCAG)3 | p5 | 109885 | 109899 | 15 | Design Primer |
77 | NC_009630 | (TGCA)15 | p4 | 111986 | 112045 | 60 | Design Primer |
78 | NC_009630 | (TGCAG)4cccagcccagtgcagcct(AGTGC)3 | c | 112250 | 112302 | 53 | Design Primer |
79 | NC_009630 | (CAGCC)11 | p5 | 114475 | 114529 | 55 | Design Primer |
80 | NC_009630 | (ATGC)3 | p4 | 116133 | 116144 | 12 | Design Primer |
81 | NC_009630 | (GCAAT)6 | p5 | 116643 | 116672 | 30 | Design Primer |
82 | NC_009630 | (T)10 | p1 | 117301 | 117310 | 10 | Design Primer |
83 | NC_009630 | (TTTAC)3 | p5 | 124105 | 124119 | 15 | Design Primer |
84 | NC_009630 | (TGCAG)3 | p5 | 126142 | 126156 | 15 | Design Primer |
85 | NC_009630 | (AGTAA)9 | p5 | 130673 | 130717 | 45 | Design Primer |
86 | NC_009630 | (TGCAG)3 | p5 | 132243 | 132257 | 15 | Design Primer |
87 | NC_009630 | (GTATA)4 | p5 | 132420 | 132439 | 20 | Design Primer |
88 | NC_009630 | (TGCAG)3 | p5 | 132605 | 132619 | 15 | Design Primer |
89 | NC_009630 | (AGTAG)3 | p5 | 133218 | 133232 | 15 | Design Primer |
90 | NC_009630 | (TGCA)3 | p4 | 134104 | 134115 | 12 | Design Primer |
91 | NC_009630 | (CTGGG)3 | p5 | 135024 | 135038 | 15 | Design Primer |
92 | NC_009630 | (GCTGG)3 | p5 | 136905 | 136919 | 15 | Design Primer |
93 | NC_009630 | (AGC)4 | p3 | 137792 | 137803 | 12 | Design Primer |
94 | NC_009630 | (CATG)3 | p4 | 138421 | 138432 | 12 | Design Primer |
95 | NC_009630 | (TGGAA)11 | p5 | 138709 | 138763 | 55 | Design Primer |
96 | NC_009630 | (AGTGC)3 | p5 | 138932 | 138946 | 15 | Design Primer |
97 | NC_009630 | (TGCA)3 | p4 | 141207 | 141218 | 12 | Design Primer |
98 | NC_009630 | (CAATGT)11caatgcagc(G)12 | c | 143942 | 144028 | 87 | Design Primer |
99 | NC_009630 | (TTATAT)3 | p6 | 144971 | 144988 | 18 | Design Primer |
100 | NC_009630 | (CCCAG)3 | p5 | 150236 | 150250 | 15 | Design Primer |
101 | NC_009630 | (TACAG)3 | p5 | 151796 | 151810 | 15 | Design Primer |
102 | NC_009630 | (ATGC)8 | p4 | 153130 | 153161 | 32 | Design Primer |
103 | NC_009630 | (CCAGT)4 | p5 | 153389 | 153408 | 20 | Design Primer |
104 | NC_009630 | (AGC)4 | p3 | 156410 | 156421 | 12 | Design Primer |
105 | NC_009630 | (ATGC)3 | p4 | 158586 | 158597 | 12 | Design Primer |
106 | NC_009630 | (CAGCC)3cagtg(CAGCC)3cagtg(CAGCC)3(CAGTG)5cagcc(CAGTG)3 | c | 159655 | 159754 | 100 | Design Primer |
107 | NC_009630 | (ACTGA)7 | p5 | 162168 | 162202 | 35 | Design Primer |
108 | NC_009630 | (T)10 | p1 | 164306 | 164315 | 10 | Design Primer |
109 | NC_009630 | (AAAGT)4 | p5 | 164541 | 164560 | 20 | Design Primer |
110 | NC_009630 | (GCAT)3 | p4 | 170145 | 170156 | 12 | Design Primer |
111 | NC_009630 | (GTGCT)3 | p5 | 170923 | 170937 | 15 | Design Primer |
112 | NC_009630 | (GGGCT)3 | p5 | 171743 | 171757 | 15 | Design Primer |
113 | NC_009630 | (TGCA)3 | p4 | 172394 | 172405 | 12 | Design Primer |
114 | NC_009630 | (A)10 | p1 | 173469 | 173478 | 10 | Design Primer |
115 | NC_009630 | (TGCA)3 | p4 | 175663 | 175674 | 12 | Design Primer |
116 | NC_009630 | (TACAA)7 | p5 | 175957 | 175991 | 35 | Design Primer |
117 | NC_009630 | (TGCA)3 | p4 | 177987 | 177998 | 12 | Design Primer |
118 | NC_009630 | (GCAT)3 | p4 | 178297 | 178308 | 12 | Design Primer |
119 | NC_009630 | (TGCA)3 | p4 | 182689 | 182700 | 12 | Design Primer |
120 | NC_009630 | (ATGC)10 | p4 | 182929 | 182968 | 40 | Design Primer |
121 | NC_009630 | (TTTAC)4tttattctgctcggtaatctgattaataactgcaataagcaggcagcacttgtttgtattgtaatctgataatacctcacagcactc(GACTG)3 | c | 184791 | 184912 | 122 | Design Primer |
122 | NC_009630 | (GCATT)4 | p5 | 187310 | 187329 | 20 | Design Primer |
123 | NC_009630 | (TGCA)3 | p4 | 188530 | 188541 | 12 | Design Primer |
124 | NC_009630 | (CAGCC)4cagtgcagcccagtgcagcccagcccagtgcagcccagtgcagtgcagcc(CAGTG)4cagcccagtgcagcc(CAGTG)3 | c | 188686 | 188805 | 120 | Design Primer |
125 | NC_009630 | (ATGCA)39 | p5 | 190883 | 191077 | 195 | Design Primer |
126 | NC_009630 | (CATC)3 | p4 | 191460 | 191471 | 12 | Design Primer |
127 | NC_009630 | (CGAGT)3 | p5 | 191851 | 191865 | 15 | Design Primer |
128 | NC_009630 | (CTGCC)4 | p5 | 200958 | 200977 | 20 | Design Primer |
129 | NC_009630 | (GCAT)5 | p4 | 201287 | 201306 | 20 | Design Primer |