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ChloroMitoSSRDB 2.00 Webserver cum Database of Cholorplast and Mitochondrial Microsatellites

Back To Genome Repeat Summary

All Repeats of Chlorokybus atmophyticus mitochondrion

Click on Table Heading To Sort Results Accordingly
S.No.Genome IDSSRSSR TypeStartEndTract LengthPrimer Design
1NC_009630(CAACC)9p558262645Design Primer
2NC_009630(AAGCAG)6(AGC)5*ccagtgcagagttttaatcggg(TGCA)4c*4334441784Design Primer
3NC_009630(CTTT)3p44838484912Design Primer
4NC_009630(CATTC)5cattttattgcagcggtctaatcaagtataataaagtagagtgcatcctggggtttactgcc(GCAT)3c5434553299Design Primer
5NC_009630(CAAAG)16p57072715180Design Primer
6NC_009630(T)12p18441845212Design Primer
7NC_009630(A)11p18723873311Design Primer
8NC_009630(TGCAA)3p58982899615Design Primer
9NC_009630(TAAGTT)7p6103141035542Design Primer
10NC_009630(TGCA)5p4128631288220Design Primer
11NC_009630(CAGTG)4p5142641428320Design Primer
12NC_009630(GCAT)3p4145361454712Design Primer
13NC_009630(C)12p1146801469112Design Primer
14NC_009630(TGCA)3p4151581516912Design Primer
15NC_009630(TGCAT)4p5153911541020Design Primer
16NC_009630(TGCAT)5(TGTAT)5c156041565350Design Primer
17NC_009630(ATTCAA)4p6177151773824Design Primer
18NC_009630(A)10p1196891969810Design Primer
19NC_009630(TGCA)3p4201822019312Design Primer
20NC_009630(CATG)4p4252812529616Design Primer
21NC_009630(GCA)13(GCAGTA)3*c*258732592654Design Primer
22NC_009630(AAAG)3p4264672647812Design Primer
23NC_009630(AATAA)3p5286122862615Design Primer
24NC_009630(T)10p1293122932110Design Primer
25NC_009630(TGCAT)3p5303933040715Design Primer
26NC_009630(CACTG)3ggcttccaaaaagggctgca(CTGGG)4c310423109655Design Primer
27NC_009630(A)11p1319603197011Design Primer
28NC_009630(TAAAG)3tagagcgtagaaaagggaaaccttctttaatattacattt(TATTC)3c325513262070Design Primer
29NC_009630(TGCA)7tggatgaccaagctgcactgcattgtatgcaacagcacagctaaacaaattatcttcagaggaaactcc(CAGTG)3c3285132962112Design Primer
30NC_009630(CATTG)3(CATTC)6c387293877345Design Primer
31NC_009630(AATGG)8(AATGC)5c427394280365Design Primer
32NC_009630(TGCA)6p4458194584224Design Primer
33NC_009630(GATTA)3p5475824759615Design Primer
34NC_009630(TAAT)3p4502915030212Design Primer
35NC_009630(GCAT)11p4561205616344Design Primer
36NC_009630(TTAGT)3p5567345674815Design Primer
37NC_009630(TGCA)4p4583185833316Design Primer
38NC_009630(AATAG)5aataaaatagaaccgttaaacgagcctgccaccaatgcgatctaacggttctggtttacgcagtttcatgtcaaattgcac(CACTG)3cacagcactggg(CTGCA)3cagcactgca(CTGGG)3(CTGCA)13c6055260789238Design Primer
39NC_009630(AGTAA)7p5609156094935Design Primer
40NC_009630(ATGCA)3p5613556136915Design Primer
41NC_009630(ATTT)3p4617366174712Design Primer
42NC_009630(CAGCG)3p5622916230515Design Primer
43NC_009630(ACCCAA)11p6629226298766Design Primer
44NC_009630(ACTAA)3p5656976571115Design Primer
45NC_009630(C)11p1662956630511Design Primer
46NC_009630(TGCAG)10cc(CAGTG)6c679666804782Design Primer
47NC_009630(CTAAAA)3p6681736819018Design Primer
48NC_009630(A)10p1683586836710Design Primer
49NC_009630(A)10p1685906859910Design Primer
50NC_009630(TCGGTC)3p6689016891818Design Primer
51NC_009630(TGCA)4p4703247033916Design Primer
52NC_009630(CATTG)3p5721497216315Design Primer
53NC_009630(CAGTG)3p5722717228515Design Primer
54NC_009630(ATGC)7p4749187494528Design Primer
55NC_009630(TGCA)3p4758787588912Design Primer
56NC_009630(TGCAG)35p57707377247175Design Primer
57NC_009630(TGCA)3p4799908000112Design Primer
58NC_009630(CTGCA)3p5806628067615Design Primer
59NC_009630(GCACT)27p58396884102135Design Primer
60NC_009630(CTAGG)3p5842138422715Design Primer
61NC_009630(T)12p1850178502812Design Primer
62NC_009630(CATTG)14p5854018547070Design Primer
63NC_009630(AAGTA)4aaccgcaactctacgaaactaattaaagagtctgcgtcgccaaagatacaatgaccgtgccatcagcccagtttaa(TTTAG)7c8559285722131Design Primer
64NC_009630(AATGC)3p5881288814215Design Primer
65NC_009630(GCATT)3p5883788839215Design Primer
66NC_009630(TGCA)5p4885328855120Design Primer
67NC_009630(TAGGC)4p5902089022720Design Primer
68NC_009630(GCAAT)3(GGAAT)9(GCAAT)4c911869126580Design Primer
69NC_009630(TGCAT)4(TCCAT)7tgcattgcattc(CATTG)3c935219360282Design Primer
70NC_009630(T)10p1967089671710Design Primer
71NC_009630(ACTAA)5p5980059802925Design Primer
72NC_009630(ACTAA)3p5989759898915Design Primer
73NC_009630(CTGCA)8p510346010349940Design Primer
74NC_009630(TTAGAA)7p610513410517542Design Primer
75NC_009630(C)10p110640610641510Design Primer
76NC_009630(TGCAG)3p510988510989915Design Primer
77NC_009630(TGCA)15p411198611204560Design Primer
78NC_009630(TGCAG)4cccagcccagtgcagcct(AGTGC)3c11225011230253Design Primer
79NC_009630(CAGCC)11p511447511452955Design Primer
80NC_009630(ATGC)3p411613311614412Design Primer
81NC_009630(GCAAT)6p511664311667230Design Primer
82NC_009630(T)10p111730111731010Design Primer
83NC_009630(TTTAC)3p512410512411915Design Primer
84NC_009630(TGCAG)3p512614212615615Design Primer
85NC_009630(AGTAA)9p513067313071745Design Primer
86NC_009630(TGCAG)3p513224313225715Design Primer
87NC_009630(GTATA)4p513242013243920Design Primer
88NC_009630(TGCAG)3p513260513261915Design Primer
89NC_009630(AGTAG)3p513321813323215Design Primer
90NC_009630(TGCA)3p413410413411512Design Primer
91NC_009630(CTGGG)3p513502413503815Design Primer
92NC_009630(GCTGG)3p513690513691915Design Primer
93NC_009630(AGC)4p313779213780312Design Primer
94NC_009630(CATG)3p413842113843212Design Primer
95NC_009630(TGGAA)11p513870913876355Design Primer
96NC_009630(AGTGC)3p513893213894615Design Primer
97NC_009630(TGCA)3p414120714121812Design Primer
98NC_009630(CAATGT)11caatgcagc(G)12c14394214402887Design Primer
99NC_009630(TTATAT)3p614497114498818Design Primer
100NC_009630(CCCAG)3p515023615025015Design Primer
101NC_009630(TACAG)3p515179615181015Design Primer
102NC_009630(ATGC)8p415313015316132Design Primer
103NC_009630(CCAGT)4p515338915340820Design Primer
104NC_009630(AGC)4p315641015642112Design Primer
105NC_009630(ATGC)3p415858615859712Design Primer
106NC_009630(CAGCC)3cagtg(CAGCC)3cagtg(CAGCC)3(CAGTG)5cagcc(CAGTG)3c159655159754100Design Primer
107NC_009630(ACTGA)7p516216816220235Design Primer
108NC_009630(T)10p116430616431510Design Primer
109NC_009630(AAAGT)4p516454116456020Design Primer
110NC_009630(GCAT)3p417014517015612Design Primer
111NC_009630(GTGCT)3p517092317093715Design Primer
112NC_009630(GGGCT)3p517174317175715Design Primer
113NC_009630(TGCA)3p417239417240512Design Primer
114NC_009630(A)10p117346917347810Design Primer
115NC_009630(TGCA)3p417566317567412Design Primer
116NC_009630(TACAA)7p517595717599135Design Primer
117NC_009630(TGCA)3p417798717799812Design Primer
118NC_009630(GCAT)3p417829717830812Design Primer
119NC_009630(TGCA)3p418268918270012Design Primer
120NC_009630(ATGC)10p418292918296840Design Primer
121NC_009630(TTTAC)4tttattctgctcggtaatctgattaataactgcaataagcaggcagcacttgtttgtattgtaatctgataatacctcacagcactc(GACTG)3c184791184912122Design Primer
122NC_009630(GCATT)4p518731018732920Design Primer
123NC_009630(TGCA)3p418853018854112Design Primer
124NC_009630(CAGCC)4cagtgcagcccagtgcagcccagcccagtgcagcccagtgcagtgcagcc(CAGTG)4cagcccagtgcagcc(CAGTG)3c188686188805120Design Primer
125NC_009630(ATGCA)39p5190883191077195Design Primer
126NC_009630(CATC)3p419146019147112Design Primer
127NC_009630(CGAGT)3p519185119186515Design Primer
128NC_009630(CTGCC)4p520095820097720Design Primer
129NC_009630(GCAT)5p420128720130620Design Primer