All Repeats of Tripsacum dactyloides mitochondrion
Click on Table Heading To Sort Results Accordingly
S.No. | Genome ID | SSR | SSR Type | Start | End | Tract Length | Primer Design |
---|---|---|---|---|---|---|---|
1 | NC_008362 | (ACTTC)7 | p5 | 3056 | 3090 | 35 | Design Primer |
2 | NC_008362 | (ATAAG)8 | p5 | 5395 | 5434 | 40 | Design Primer |
3 | NC_008362 | (TTTGAC)5 | p6 | 12594 | 12623 | 30 | Design Primer |
4 | NC_008362 | (ATAAG)3 | p5 | 12790 | 12804 | 15 | Design Primer |
5 | NC_008362 | (ATAAGA)36 | p6 | 14942 | 15157 | 216 | Design Primer |
6 | NC_008362 | (CTTT)3 | p4 | 15475 | 15486 | 12 | Design Primer |
7 | NC_008362 | (TAAGA)11 | p5 | 18860 | 18914 | 55 | Design Primer |
8 | NC_008362 | (AGT)4 | p3 | 23290 | 23301 | 12 | Design Primer |
9 | NC_008362 | (TAT)4 | p3 | 25171 | 25182 | 12 | Design Primer |
10 | NC_008362 | (GATTA)5(TATTA)9 | c | 32236 | 32305 | 70 | Design Primer |
11 | NC_008362 | (TAGAG)10 | p5 | 32542 | 32591 | 50 | Design Primer |
12 | NC_008362 | (TCTTTA)28 | p6 | 39043 | 39210 | 168 | Design Primer |
13 | NC_008362 | (A)10 | p1 | 40796 | 40805 | 10 | Design Primer |
14 | NC_008362 | (AATG)3 | p4 | 41597 | 41608 | 12 | Design Primer |
15 | NC_008362 | (AAAG)3 | p4 | 42945 | 42956 | 12 | Design Primer |
16 | NC_008362 | (TCTA)3 | p4 | 46369 | 46380 | 12 | Design Primer |
17 | NC_008362 | (TAAAG)14 | p5 | 49941 | 50010 | 70 | Design Primer |
18 | NC_008362 | (AAGC)3 | p4 | 51976 | 51987 | 12 | Design Primer |
19 | NC_008362 | (TACTA)11 | p5 | 52947 | 53001 | 55 | Design Primer |
20 | NC_008362 | (A)10 | p1 | 60579 | 60588 | 10 | Design Primer |
21 | NC_008362 | (AGTC)3 | p4 | 61635 | 61646 | 12 | Design Primer |
22 | NC_008362 | (ACTAA)6 | p5 | 64966 | 64995 | 30 | Design Primer |
23 | NC_008362 | (CAAG)3 | p4 | 66115 | 66126 | 12 | Design Primer |
24 | NC_008362 | (T)11acttattaaattctctgtcttgctagacacaaatccttcttttcttgtatagacg(A)10 | c | 67652 | 67727 | 76 | Design Primer |
25 | NC_008362 | (ATAGAG)6 | p6 | 72825 | 72860 | 36 | Design Primer |
26 | NC_008362 | (CTTG)3 | p4 | 74198 | 74209 | 12 | Design Primer |
27 | NC_008362 | (A)10 | p1 | 74706 | 74715 | 10 | Design Primer |
28 | NC_008362 | (TAAGTG)4 | p6 | 76993 | 77016 | 24 | Design Primer |
29 | NC_008362 | (TATTGG)4 | p6 | 78271 | 78294 | 24 | Design Primer |
30 | NC_008362 | (TTAT)3cccaa(CTAAAT)8 | c | 78990 | 79054 | 65 | Design Primer |
31 | NC_008362 | (A)10 | p1 | 84563 | 84572 | 10 | Design Primer |
32 | NC_008362 | (TACC)3 | p4 | 86313 | 86324 | 12 | Design Primer |
33 | NC_008362 | (CTGA)3 | p4 | 88083 | 88094 | 12 | Design Primer |
34 | NC_008362 | (TACTTA)14 | p6 | 88565 | 88648 | 84 | Design Primer |
35 | NC_008362 | (AACAA)3 | p5 | 98778 | 98792 | 15 | Design Primer |
36 | NC_008362 | (TACTAA)13tactct(TACTAA)12tactct(TACTAA)12 | c | 104340 | 104573 | 234 | Design Primer |
37 | NC_008362 | (ATAAAA)33 | p6 | 113270 | 113467 | 198 | Design Primer |
38 | NC_008362 | (TAGC)3 | p4 | 122173 | 122184 | 12 | Design Primer |
39 | NC_008362 | (TGTT)3 | p4 | 127185 | 127196 | 12 | Design Primer |
40 | NC_008362 | (ACCT)4 | p4 | 130218 | 130233 | 16 | Design Primer |
41 | NC_008362 | (TATAC)13 | p5 | 131611 | 131675 | 65 | Design Primer |
42 | NC_008362 | (TCCAT)7 | p5 | 138615 | 138649 | 35 | Design Primer |
43 | NC_008362 | (TATAG)11 | p5 | 148434 | 148488 | 55 | Design Primer |
44 | NC_008362 | (T)10agttcgcactgctctttctctctaaattgcatcaaagaaaat(AG)6 | c | 153859 | 153922 | 64 | Design Primer |
45 | NC_008362 | (GAGC)3 | p4 | 156600 | 156611 | 12 | Design Primer |
46 | NC_008362 | (ATGAG)5 | p5 | 157393 | 157417 | 25 | Design Primer |
47 | NC_008362 | (TTAAGA)11 | p6 | 164204 | 164269 | 66 | Design Primer |
48 | NC_008362 | (TTCTA)7 | p5 | 165439 | 165473 | 35 | Design Primer |
49 | NC_008362 | (A)14 | p1 | 173596 | 173609 | 14 | Design Primer |
50 | NC_008362 | (TATAA)3 | p5 | 178382 | 178396 | 15 | Design Primer |
51 | NC_008362 | (AGTA)3 | p4 | 184876 | 184887 | 12 | Design Primer |
52 | NC_008362 | (AAAGT)9 | p5 | 188739 | 188783 | 45 | Design Primer |
53 | NC_008362 | (ATG)4 | p3 | 189758 | 189769 | 12 | Design Primer |
54 | NC_008362 | (GCAA)3 | p4 | 195056 | 195067 | 12 | Design Primer |
55 | NC_008362 | (ATCAA)5 | p5 | 198212 | 198236 | 25 | Design Primer |
56 | NC_008362 | (TGAA)3 | p4 | 199132 | 199143 | 12 | Design Primer |
57 | NC_008362 | (TACTA)22 | p5 | 200231 | 200340 | 110 | Design Primer |
58 | NC_008362 | (ACC)4 | p3 | 202916 | 202927 | 12 | Design Primer |
59 | NC_008362 | (AAGA)3 | p4 | 203053 | 203064 | 12 | Design Primer |
60 | NC_008362 | (TCCTTA)3 | p6 | 204527 | 204544 | 18 | Design Primer |
61 | NC_008362 | (TGGT)3 | p4 | 204724 | 204735 | 12 | Design Primer |
62 | NC_008362 | (AAGTA)34 | p5 | 205241 | 205410 | 170 | Design Primer |
63 | NC_008362 | (TCTAAG)5(TATAAG)19 | c | 208023 | 208166 | 144 | Design Primer |
64 | NC_008362 | (A)13 | p1 | 211022 | 211034 | 13 | Design Primer |
65 | NC_008362 | (T)10 | p1 | 211684 | 211693 | 10 | Design Primer |
66 | NC_008362 | (AAGA)3 | p4 | 214646 | 214657 | 12 | Design Primer |
67 | NC_008362 | (TAAA)3 | p4 | 225455 | 225466 | 12 | Design Primer |
68 | NC_008362 | (AAGA)3 | p4 | 225663 | 225674 | 12 | Design Primer |
69 | NC_008362 | (TCTTT)13tgtagtacc(TATTAG)21 | c | 230604 | 230803 | 200 | Design Primer |
70 | NC_008362 | (ACT)4 | p3 | 233430 | 233441 | 12 | Design Primer |
71 | NC_008362 | (ACTC)3 | p4 | 242859 | 242870 | 12 | Design Primer |
72 | NC_008362 | (CCATTT)24 | p6 | 245638 | 245781 | 144 | Design Primer |
73 | NC_008362 | (CAA)4 | p3 | 248893 | 248904 | 12 | Design Primer |
74 | NC_008362 | (TCGC)3 | p4 | 259580 | 259591 | 12 | Design Primer |
75 | NC_008362 | (TAGCCC)7 | p6 | 259877 | 259918 | 42 | Design Primer |
76 | NC_008362 | (CTAAGT)15 | p6 | 261316 | 261405 | 90 | Design Primer |
77 | NC_008362 | (TTC)4 | p3 | 262021 | 262032 | 12 | Design Primer |
78 | NC_008362 | (GGGC)3 | p4 | 267766 | 267777 | 12 | Design Primer |
79 | NC_008362 | (CCAA)3 | p4 | 271427 | 271438 | 12 | Design Primer |
80 | NC_008362 | (AAGA)3 | p4 | 276472 | 276483 | 12 | Design Primer |
81 | NC_008362 | (ACTAA)3 | p5 | 277389 | 277403 | 15 | Design Primer |
82 | NC_008362 | (ACAG)3 | p4 | 277866 | 277877 | 12 | Design Primer |
83 | NC_008362 | (ACTG)3 | p4 | 278695 | 278706 | 12 | Design Primer |
84 | NC_008362 | (CCGG)3 | p4 | 279843 | 279854 | 12 | Design Primer |
85 | NC_008362 | (TCT)4 | p3 | 280812 | 280823 | 12 | Design Primer |
86 | NC_008362 | (ATTAAG)20 | p6 | 284210 | 284329 | 120 | Design Primer |
87 | NC_008362 | (AAAG)3 | p4 | 287715 | 287726 | 12 | Design Primer |
88 | NC_008362 | (TATTA)11 | p5 | 292710 | 292764 | 55 | Design Primer |
89 | NC_008362 | (CTTCTG)4 | p6 | 298663 | 298686 | 24 | Design Primer |
90 | NC_008362 | (CTT)4 | p3 | 303694 | 303705 | 12 | Design Primer |
91 | NC_008362 | (TGAG)3 | p4 | 307631 | 307642 | 12 | Design Primer |
92 | NC_008362 | (ACCAT)14 | p5 | 309097 | 309166 | 70 | Design Primer |
93 | NC_008362 | (AAGA)3 | p4 | 310602 | 310613 | 12 | Design Primer |
94 | NC_008362 | (A)10 | p1 | 315791 | 315800 | 10 | Design Primer |
95 | NC_008362 | (TTCTAA)8 | p6 | 316951 | 316998 | 48 | Design Primer |
96 | NC_008362 | (TAA)4 | p3 | 317758 | 317769 | 12 | Design Primer |
97 | NC_008362 | (ATATA)26 | p5 | 318911 | 319040 | 130 | Design Primer |
98 | NC_008362 | (GAC)4 | p3 | 325388 | 325399 | 12 | Design Primer |
99 | NC_008362 | (AATACG)11 | p6 | 328945 | 329010 | 66 | Design Primer |
100 | NC_008362 | (TTGG)3 | p4 | 331560 | 331571 | 12 | Design Primer |
101 | NC_008362 | (TAAG)3 | p4 | 335196 | 335207 | 12 | Design Primer |
102 | NC_008362 | (CAATA)16 | p5 | 337209 | 337288 | 80 | Design Primer |
103 | NC_008362 | (AAAGT)6 | p5 | 344805 | 344834 | 30 | Design Primer |
104 | NC_008362 | (TATAC)9 | p5 | 349586 | 349630 | 45 | Design Primer |
105 | NC_008362 | (ATAGT)18aaagatccgcagtacaggtgtaacagcaatcaagctact(AAGGAA)9 | c | 358656 | 358838 | 183 | Design Primer |
106 | NC_008362 | (GTAGA)15 | p5 | 362206 | 362280 | 75 | Design Primer |
107 | NC_008362 | (TTTGA)12 | p5 | 365403 | 365462 | 60 | Design Primer |
108 | NC_008362 | (TTC)4 | p3 | 366167 | 366178 | 12 | Design Primer |
109 | NC_008362 | (ACAG)3 | p4 | 369015 | 369026 | 12 | Design Primer |
110 | NC_008362 | (TCTTA)3 | p5 | 375509 | 375523 | 15 | Design Primer |
111 | NC_008362 | (AAAGT)6 | p5 | 378366 | 378395 | 30 | Design Primer |
112 | NC_008362 | (CTATT)3 | p5 | 380078 | 380092 | 15 | Design Primer |
113 | NC_008362 | (AAAG)3 | p4 | 382642 | 382653 | 12 | Design Primer |
114 | NC_008362 | (TTA)4 | p3 | 384285 | 384296 | 12 | Design Primer |
115 | NC_008362 | (TATAAG)3 | p6 | 385562 | 385579 | 18 | Design Primer |
116 | NC_008362 | (AAG)4 | p3 | 388894 | 388905 | 12 | Design Primer |
117 | NC_008362 | (T)10 | p1 | 396812 | 396821 | 10 | Design Primer |
118 | NC_008362 | (TTAGTA)6 | p6 | 397214 | 397249 | 36 | Design Primer |
119 | NC_008362 | (CAGA)3 | p4 | 402999 | 403010 | 12 | Design Primer |
120 | NC_008362 | (TATAG)26 | p5 | 411081 | 411210 | 130 | Design Primer |
121 | NC_008362 | (AAT)4ataaagatataatata(TAT)5 | c | 411498 | 411540 | 43 | Design Primer |
122 | NC_008362 | (A)10 | p1 | 413000 | 413009 | 10 | Design Primer |
123 | NC_008362 | (CTATGG)3 | p6 | 417380 | 417397 | 18 | Design Primer |
124 | NC_008362 | (TAACCT)15 | p6 | 418499 | 418588 | 90 | Design Primer |
125 | NC_008362 | (ATAAG)30 | p5 | 418974 | 419123 | 150 | Design Primer |
126 | NC_008362 | (ATGA)3 | p4 | 422449 | 422460 | 12 | Design Primer |
127 | NC_008362 | (TACTA)21 | p5 | 422729 | 422833 | 105 | Design Primer |
128 | NC_008362 | (ACTAA)6 | p5 | 424818 | 424847 | 30 | Design Primer |
129 | NC_008362 | (TTTCAC)4 | p6 | 433256 | 433279 | 24 | Design Primer |
130 | NC_008362 | (TTCC)3 | p4 | 436523 | 436534 | 12 | Design Primer |
131 | NC_008362 | (CTGAAA)5 | p6 | 438032 | 438061 | 30 | Design Primer |
132 | NC_008362 | (ACGAA)7 | p5 | 439076 | 439110 | 35 | Design Primer |
133 | NC_008362 | (TAA)4 | p3 | 447491 | 447502 | 12 | Design Primer |
134 | NC_008362 | (TACTA)3taacgcacacgtttcattattgttgctttactat(ATATG)5 | c | 448613 | 448686 | 74 | Design Primer |
135 | NC_008362 | (TATAG)11 | p5 | 460134 | 460188 | 55 | Design Primer |
136 | NC_008362 | (T)10agttcgcactgctctttctctctaaattgcatcaaagaaaat(AG)6 | c | 465559 | 465622 | 64 | Design Primer |
137 | NC_008362 | (GAGC)3 | p4 | 468300 | 468311 | 12 | Design Primer |
138 | NC_008362 | (ATGAG)5 | p5 | 469093 | 469117 | 25 | Design Primer |
139 | NC_008362 | (TTAAGA)11 | p6 | 475904 | 475969 | 66 | Design Primer |
140 | NC_008362 | (TTCTA)7 | p5 | 477139 | 477173 | 35 | Design Primer |
141 | NC_008362 | (A)14 | p1 | 485296 | 485309 | 14 | Design Primer |
142 | NC_008362 | (TATAA)3 | p5 | 490082 | 490096 | 15 | Design Primer |
143 | NC_008362 | (AGTA)3 | p4 | 496576 | 496587 | 12 | Design Primer |
144 | NC_008362 | (AAAGT)9 | p5 | 500439 | 500483 | 45 | Design Primer |
145 | NC_008362 | (ATG)4 | p3 | 501458 | 501469 | 12 | Design Primer |
146 | NC_008362 | (GCAA)3 | p4 | 506756 | 506767 | 12 | Design Primer |
147 | NC_008362 | (ATCAA)5 | p5 | 509912 | 509936 | 25 | Design Primer |
148 | NC_008362 | (TGAA)3 | p4 | 510832 | 510843 | 12 | Design Primer |
149 | NC_008362 | (TACTA)22 | p5 | 511931 | 512040 | 110 | Design Primer |
150 | NC_008362 | (ACC)4 | p3 | 514616 | 514627 | 12 | Design Primer |
151 | NC_008362 | (AAGA)3 | p4 | 514753 | 514764 | 12 | Design Primer |
152 | NC_008362 | (TCCTTA)3 | p6 | 516227 | 516244 | 18 | Design Primer |
153 | NC_008362 | (TGGT)3 | p4 | 516424 | 516435 | 12 | Design Primer |
154 | NC_008362 | (AAGTA)34 | p5 | 516941 | 517110 | 170 | Design Primer |
155 | NC_008362 | (TCTAAG)5(TATAAG)19 | c | 519723 | 519866 | 144 | Design Primer |
156 | NC_008362 | (A)13 | p1 | 522722 | 522734 | 13 | Design Primer |
157 | NC_008362 | (T)10 | p1 | 523384 | 523393 | 10 | Design Primer |
158 | NC_008362 | (AAGA)3 | p4 | 526346 | 526357 | 12 | Design Primer |
159 | NC_008362 | (TAAA)3 | p4 | 537155 | 537166 | 12 | Design Primer |
160 | NC_008362 | (AAGA)3 | p4 | 537363 | 537374 | 12 | Design Primer |
161 | NC_008362 | (TCTTT)13tgtagtacc(TATTAG)21 | c | 542304 | 542503 | 200 | Design Primer |
162 | NC_008362 | (ACT)4 | p3 | 545130 | 545141 | 12 | Design Primer |
163 | NC_008362 | (ACTC)3 | p4 | 554559 | 554570 | 12 | Design Primer |
164 | NC_008362 | (CCATTT)24 | p6 | 557338 | 557481 | 144 | Design Primer |
165 | NC_008362 | (GAAA)3 | p4 | 566910 | 566921 | 12 | Design Primer |
166 | NC_008362 | (ACA)4 | p3 | 568070 | 568081 | 12 | Design Primer |
167 | NC_008362 | (TTC)4 | p3 | 576554 | 576565 | 12 | Design Primer |
168 | NC_008362 | (GCTT)3 | p4 | 577599 | 577610 | 12 | Design Primer |
169 | NC_008362 | (AGGCAG)3 | p6 | 579406 | 579423 | 18 | Design Primer |
170 | NC_008362 | (ACTTA)3 | p5 | 583228 | 583242 | 15 | Design Primer |
171 | NC_008362 | (T)13 | p1 | 583566 | 583578 | 13 | Design Primer |
172 | NC_008362 | (ATCCC)5 | p5 | 586813 | 586837 | 25 | Design Primer |
173 | NC_008362 | (ATAGA)15 | p5 | 587986 | 588060 | 75 | Design Primer |
174 | NC_008362 | (T)10 | p1 | 591086 | 591095 | 10 | Design Primer |
175 | NC_008362 | (TCTT)3 | p4 | 596273 | 596284 | 12 | Design Primer |
176 | NC_008362 | (TATGG)14 | p5 | 597719 | 597788 | 70 | Design Primer |
177 | NC_008362 | (TATAC)9 | p5 | 598954 | 598998 | 45 | Design Primer |
178 | NC_008362 | (TTCTGG)3 | p6 | 603530 | 603547 | 18 | Design Primer |
179 | NC_008362 | (CTA)40 | p3 | 609867 | 609986 | 120 | Design Primer |
180 | NC_008362 | (TAATA)14 | p5 | 610452 | 610521 | 70 | Design Primer |
181 | NC_008362 | (CACTTT)9 | p6 | 610959 | 611012 | 54 | Design Primer |
182 | NC_008362 | (TTTG)3 | p4 | 611652 | 611663 | 12 | Design Primer |
183 | NC_008362 | (ATT)4 | p3 | 612340 | 612351 | 12 | Design Primer |
184 | NC_008362 | (TTTAG)3 | p5 | 613426 | 613440 | 15 | Design Primer |
185 | NC_008362 | (TCCT)3 | p4 | 613955 | 613966 | 12 | Design Primer |
186 | NC_008362 | (TAAGTT)6 | p6 | 615473 | 615508 | 36 | Design Primer |
187 | NC_008362 | (AG)6 | p2 | 616046 | 616057 | 12 | Design Primer |
188 | NC_008362 | (TTCAAT)24 | p6 | 619816 | 619959 | 144 | Design Primer |
189 | NC_008362 | (TCTT)3 | p4 | 621669 | 621680 | 12 | Design Primer |
190 | NC_008362 | (ATAGG)9 | p5 | 624783 | 624827 | 45 | Design Primer |
191 | NC_008362 | (CTATGG)14 | p6 | 625646 | 625729 | 84 | Design Primer |
192 | NC_008362 | (T)10 | p1 | 627273 | 627282 | 10 | Design Primer |
193 | NC_008362 | (ACCATA)13 | p6 | 629260 | 629337 | 78 | Design Primer |
194 | NC_008362 | (TTAGTT)15 | p6 | 631839 | 631928 | 90 | Design Primer |
195 | NC_008362 | (CTTT)3 | p4 | 643305 | 643316 | 12 | Design Primer |
196 | NC_008362 | (TGG)4 | p3 | 643852 | 643863 | 12 | Design Primer |
197 | NC_008362 | (TTCGT)5 | p5 | 644700 | 644724 | 25 | Design Primer |
198 | NC_008362 | (CTTATC)23 | p6 | 645609 | 645746 | 138 | Design Primer |
199 | NC_008362 | (ATAGAA)27 | p6 | 647756 | 647917 | 162 | Design Primer |
200 | NC_008362 | (TGGAT)22 | p5 | 653291 | 653400 | 110 | Design Primer |
201 | NC_008362 | (GTATA)18 | p5 | 654420 | 654509 | 90 | Design Primer |
202 | NC_008362 | (GCCCCA)11 | p6 | 656262 | 656327 | 66 | Design Primer |
203 | NC_008362 | (AT)6agtgtagttttttgaaggaaatgctgtgaatgaaaaggcttctc(TACTA)3 | c | 664485 | 664555 | 71 | Design Primer |
204 | NC_008362 | (GGCTT)3 | p5 | 671392 | 671406 | 15 | Design Primer |
205 | NC_008362 | (AAG)4 | p3 | 674597 | 674608 | 12 | Design Primer |
206 | NC_008362 | (TCGT)3 | p4 | 679393 | 679404 | 12 | Design Primer |
207 | NC_008362 | (TACTT)3a(ACTTT)4 | c | 683219 | 683254 | 36 | Design Primer |
208 | NC_008362 | (A)10 | p1 | 683583 | 683592 | 10 | Design Primer |
209 | NC_008362 | (C)10 | p1 | 685419 | 685428 | 10 | Design Primer |
210 | NC_008362 | (GCTA)3 | p4 | 686834 | 686845 | 12 | Design Primer |
211 | NC_008362 | (ATTGAA)5 | p6 | 702090 | 702119 | 30 | Design Primer |